mRNA_H-elongata_contig102486.218.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig102486.218.1
Unique Name	mRNA_H-elongata_contig102486.218.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Match: D8LGF8_ECTSI (OSJNBa0029H02.30 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF8_ECTSI)

HSP 1 Score: 289 bits (739), Expect = 5.130e-94
Identity = 135/158 (85.44%), Postives = 152/158 (96.20%), Query Frame = 1

Query:   10 SWYDREEGVSDSRSAKRRQGRLHKWIGDTCLLLGSPKDALEHYSQSMSDTRASHDPLWHAGCLEGYAACLAAMSDADHPTVHGDQALALVRDMAKDRELEKAGQEGNSTWTVLAEAVISEKCEEALSVLSRYSLLGALEVELCFKTARFHACAQPSPR 483
            SWY+REE +SDS++AKRR GRLHKWIGDTCLLLGSPKDALEHYSQSMS+T+AS DPLWHAGCLEGYAACL+AMSDADHPTVHGDQALAL++DMAKD+ELE+AGQEG+STWTVLAEAV+SEKCEEAL+V SR+  LG+LEVELCFKTARFHACAQP+PR
Sbjct:  233 SWYEREEVLSDSKNAKRRVGRLHKWIGDTCLLLGSPKDALEHYSQSMSETKASTDPLWHAGCLEGYAACLSAMSDADHPTVHGDQALALLKDMAKDKELERAGQEGSSTWTVLAEAVVSEKCEEALAVFSRHPPLGSLEVELCFKTARFHACAQPTPR 390

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BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Match: A0A6H5J9H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9H9_9PHAE)

HSP 1 Score: 280 bits (717), Expect = 1.630e-84
Identity = 136/172 (79.07%), Postives = 152/172 (88.37%), Query Frame = 1

Query:   10 SWYDREEGVSDSRSAKRRQGRLHKWIGDTCLLLGSPK--------------DALEHYSQSMSDTRASHDPLWHAGCLEGYAACLAAMSDADHPTVHGDQALALVRDMAKDRELEKAGQEGNSTWTVLAEAVISEKCEEALSVLSRYSLLGALEVELCFKTARFHACAQPSPR 483
            SWY+REE +SDS++AKRR GRLHKWIGDTCLLLGSPK              DALEHYSQSMS+T+AS DPLWHAGCLEGYAACL+AMSDADHPTVHGDQALAL+RDMAKD+ELE+AGQEG+STWTVLAEAV+SEKCEEAL+V SR+  LG+LEVELCFKTARFHACAQP+PR
Sbjct:  233 SWYEREEVLSDSKNAKRRVGRLHKWIGDTCLLLGSPKCLSVCVLSLLLRPKDALEHYSQSMSETKASTDPLWHAGCLEGYAACLSAMSDADHPTVHGDQALALLRDMAKDKELERAGQEGSSTWTVLAEAVVSEKCEEALAVFSRHPPLGSLEVELCFKTARFHACAQPTPR 404

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BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Match: A0A835ZHG4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZHG4_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.530e-15
Identity = 39/82 (47.56%), Postives = 53/82 (64.63%), Query Frame = 1

Query:   34 VSDSRSAKRRQGRLHKWIGDTCLLLGSPKDALEHYSQSMSDTRASHDPLWHAGCLEGYAACLAAMSDADHPTVHGDQALALV 279
             +D   A+RR GRL KW+GD  LL G+PKDA+E Y  + ++  A  DPLWHAG LEG+AA L A++D + PT    +   L+
Sbjct:  283 AADRARARRRWGRLRKWLGDLALLAGTPKDAVELYDAAAAEL-AKADPLWHAGALEGFAAALVALADDETPTAVPPEIFKLI 363

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BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Match: A0A1X6P8K3_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P8K3_PORUM)

HSP 1 Score: 69.3 bits (168), Expect = 1.070e-10
Identity = 34/60 (56.67%), Postives = 42/60 (70.00%), Query Frame = 1

Query:   43 SRSAKRRQGRLHKWIGDTCLLLGSPKDALEHYSQSMSDTRASHDPLWHAGCLEGYAACLA 222
            S+ AKRR GRL KW+GD  LL+GSP DAL  Y+ ++  +RA+ D LW AG  EG AA LA
Sbjct:  510 SKLAKRRLGRLDKWLGDYFLLIGSPSDALTKYNSAVERSRANSDRLWLAGATEGAAAALA 569

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BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Match: A0A4D9D6X0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D6X0_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 1.370e-10
Identity = 27/50 (54.00%), Postives = 40/50 (80.00%), Query Frame = 1

Query:   64 QGRLHKWIGDTCLLLGSPKDALEHYSQSMSDTRASHDPLWHAGCLEGYAA 213
            +GR  KW+GD CLL G+P+DALE Y+Q++++ +A+ +PLW AG LEG+ A
Sbjct:  304 RGRWGKWVGDLCLLAGTPQDALEAYAQALAECKAAGEPLWQAGALEGWIA 353

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BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Match: A0A0D2X4E8_CAPO3 (Uncharacterized protein n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2X4E8_CAPO3)

HSP 1 Score: 65.9 bits (159), Expect = 1.660e-9
Identity = 35/85 (41.18%), Postives = 53/85 (62.35%), Query Frame = 1

Query:   19 DREEGVSDSR--SAKRRQ--GRLHKWIGDTCLLLGSPKDALEHYSQSMSDTRASHDPLWHAGCLEGYAACLAAMSDADHPTVHGD 261
            +R  G+ D+R  +A R++  GR  K  GD CLL+GSP DA+ HY++++  T++++D L+ AGCLE +AA L        P V  D
Sbjct:  388 ERTGGIDDARFYNANRKKIVGRFEKLAGDICLLVGSPDDAIVHYTEAIEQTKSANDWLYLAGCLECFAATLLVKHKMGDPLVLSD 472

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BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Match: A0A7S2FJH2_9CHLO (Hypothetical protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7S2FJH2_9CHLO)

HSP 1 Score: 59.3 bits (142), Expect = 4.580e-8
Identity = 34/78 (43.59%), Postives = 40/78 (51.28%), Query Frame = 1

Query:   61 RQGRLHKWIGDTCLLLGSPKDALEHYSQSMSDTRASHDPLWHAGCLEGYAACLA-------AMSDADHPTVHGDQALA 273
            R GRL K IGD CL++GSP DALEHY  S    R   D  W A  LEG A  +        A+ D++     G  ALA
Sbjct:   50 RHGRLRKSIGDVCLMVGSPLDALEHYETSAELRRQVGDTCWQAAALEGRACAILLAHHLGIAIDDSEDDADGGTVALA 127

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BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Match: A0A830H8L0_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830H8L0_9CHLO)

HSP 1 Score: 60.5 bits (145), Expect = 1.220e-7
Identity = 34/78 (43.59%), Postives = 41/78 (52.56%), Query Frame = 1

Query:   61 RQGRLHKWIGDTCLLLGSPKDALEHYSQSMSDTRASHDPLWHAGCLEGYAACL-------AAMSDADHPTVHGDQALA 273
            R GRL K IGD CL++GSP DALEHY  S   +R   D  W A  LEG A  +        A+ D++     G  ALA
Sbjct:  337 RHGRLRKSIGDVCLMVGSPLDALEHYETSAELSRQVGDTCWQAAALEGRACAILLAHHLGVAIDDSEDDADGGTVALA 414

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BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Match: A0A7S1ES92_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ES92_9RHOD)

HSP 1 Score: 56.6 bits (135), Expect = 2.630e-6
Identity = 26/62 (41.94%), Postives = 37/62 (59.68%), Query Frame = 1

Query:   34 VSDSRSAKRRQGRLHKWIGDTCLLLGSPKDALEHYSQSMSDTRASHDPLWHAGCLEGYAACL 219
               S  ++R++GR+HK +GD  LLLG+  DAL  +  +    RA+ D LW AG +EG  A L
Sbjct:  298 ADSSMLSRRKEGRIHKIVGDHLLLLGAASDALSSFKSASEQCRANSDRLWLAGAIEGEIATL 359

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BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Match: A0A5B8MCM1_9CHLO (Uncharacterized protein n=2 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MCM1_9CHLO)

HSP 1 Score: 55.8 bits (133), Expect = 4.640e-6
Identity = 41/130 (31.54%), Postives = 56/130 (43.08%), Query Frame = 1

Query:   67 GRLHKWIGDTCLLLGSPKDALEHYSQSMSDTRASHDPLWHAGCLEGYAACLAAMSDADHPTVHGDQALALVRDMAKDRELEKAGQEGNSTWTVLAEAVISEKCEEALSVLSRYSLLGALEVELCFKTARF 456
            GRL K +GD CL + SP DAL HY+ ++  T+   D LWHA  LEG  A                   A  RD      +  A ++    W  + +A     C++A ++   Y  L  L   L  KTA F
Sbjct:  381 GRLKKELGDYCLCVRSPDDALVHYAAALDVTKECGDILWHASALEGTCAV---------------DVCAFFRDNEMVEPV--ASKKLEQLWLSVRQA-----CDQAANL---YKSLPTLRASLLLKTAHF 485

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot

BLAST of mRNA_H-elongata_contig102486.218.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12

ZOOM

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POSITION

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Match Name	E-value	Identity	Description
D8LGF8_ECTSI	5.130e-94	85.44	OSJNBa0029H02.30 n=1 Tax=Ectocarpus siliculosus Ta...	[more]
A0A6H5J9H9_9PHAE	1.630e-84	79.07	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A835ZHG4_9STRA	2.530e-15	47.56	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A1X6P8K3_PORUM	1.070e-10	56.67	Uncharacterized protein n=1 Tax=Porphyra umbilical...	[more]
A0A4D9D6X0_9STRA	1.370e-10	54.00	Uncharacterized protein n=1 Tax=Nannochloropsis sa...	[more]
A0A0D2X4E8_CAPO3	1.660e-9	41.18	Uncharacterized protein n=1 Tax=Capsaspora owczarz...	[more]
A0A7S2FJH2_9CHLO	4.580e-8	43.59	Hypothetical protein n=1 Tax=Pycnococcus provasoli...	[more]
A0A830H8L0_9CHLO	1.220e-7	43.59	Uncharacterized protein n=1 Tax=Pycnococcus provas...	[more]
A0A7S1ES92_9RHOD	2.630e-6	41.94	Hypothetical protein n=1 Tax=Timspurckia oligopyre...	[more]
A0A5B8MCM1_9CHLO	4.640e-6	31.54	Uncharacterized protein n=2 Tax=Chloropicon primus...	[more]

Pages

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	291.2
Seed ortholog evalue	3e-76
Seed eggNOG ortholog	2880.D8LGF8
Preferred name	TRAPPC9
KEGG ko	ko:K20306
GOs	GO:0000003,GO:0000212,GO:0000226,GO:0000278,GO:0000280,GO:0000281,GO:0000910,GO:0000911,GO:0000916,GO:0000919,GO:0003674,GO:0005085,GO:0005088,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005794,GO:0005801,GO:0005802,GO:0005829,GO:0005886,GO:0006355,GO:0006810,GO:0006886,GO:0006888,GO:0006891,GO:0006892,GO:0006893,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007107,GO:0007110,GO:0007111,GO:0007112,GO:0007140,GO:0007275,GO:0007276,GO:0007283,GO:0007399,GO:0007417,GO:0007420,GO:0008104,GO:0008150,GO:0009889,GO:0009987,GO:0010468,GO:0010556,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016482,GO:0017016,GO:0017112,GO:0017137,GO:0019219,GO:0019222,GO:0019899,GO:0019953,GO:0021537,GO:0021543,GO:0021987,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030008,GO:0030029,GO:0030036,GO:0030154,GO:0030182,GO:0030427,GO:0030865,GO:0030866,GO:0030900,GO:0031032,GO:0031267,GO:0031323,GO:0031326,GO:0031410,GO:0031982,GO:0031984,GO:0032153,GO:0032154,GO:0032155,GO:0032501,GO:0032502,GO:0032504,GO:0032506,GO:0032991,GO:0033036,GO:0033206,GO:0034498,GO:0034613,GO:0035838,GO:0036063,GO:0036213,GO:0042147,GO:0042886,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0044837,GO:0045184,GO:0046907,GO:0048137,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048232,GO:0048285,GO:0048513,GO:0048518,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0051020,GO:0051090,GO:0051091,GO:0051092,GO:0051171,GO:0051179,GO:0051234,GO:0051252,GO:0051286,GO:0051301,GO:0051321,GO:0051336,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051704,GO:0060255,GO:0060322,GO:0061024,GO:0061640,GO:0061796,GO:0061982,GO:0061983,GO:0065003,GO:0065007,GO:0065009,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0080090,GO:0090114,GO:0097708,GO:0098590,GO:0098772,GO:0098791,GO:0098876,GO:0099023,GO:0140013,GO:1902410,GO:1903046,GO:1903047,GO:1903506,GO:1990071,GO:2000112,GO:2001141
EggNOG free text desc.	cell plate assembly
EggNOG OGs	KOG1953@1,KOG1953@2759
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko04131
Hectar predicted targeting category	other localisation
Ec32 ortholog description	Tetratricopeptide-like helical domain
Ec32 ortholog	Ec-16_003880.1
Exons	3
Model size	486
Cds size	486
Stop	1
Start	1

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig102486:325..1858+
coding sequence from alignment at H-elongata_contig102486:325..1858+

protein sequence of mRNA_H-elongata_contig102486.218.1

>prot_H-elongata_contig102486.218.1 ID=prot_H-elongata_contig102486.218.1|Name=mRNA_H-elongata_contig102486.218.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=162bp
MYRSWYDREEGVSDSRSAKRRQGRLHKWIGDTCLLLGSPKDALEHYSQSM
SDTRASHDPLWHAGCLEGYAACLAAMSDADHPTVHGDQALALVRDMAKDR
ELEKAGQEGNSTWTVLAEAVISEKCEEALSVLSRYSLLGALEVELCFKTA
RFHACAQPSPR*

mRNA from alignment at H-elongata_contig102486:325..1858+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig102486.218.1 ID=mRNA_H-elongata_contig102486.218.1|Name=mRNA_H-elongata_contig102486.218.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1534bp|location=Sequence derived from alignment at H-elongata_contig102486:325..1858+ (Himanthalia elongata Himel1 dioecious)
ATGTATAGGTCCTGGTACGATCGGGAAGAAGGGGTCAGCGACAGCCGGAG
CGCCAAGCGTCGCCAGGGTCGCTTGCACAAGTGGATCGGAGATACTTGCT
TACTCCTCGGGTCACCGAAGGTTGATGCCCGTCCGATTGGTGTGGCTGAG
TGGGCGCCTACTAGACAGGATTGGGCAGACATACGGACTATATAATGGCG
CTTTCGCCAAAGCCGTAGTAGCTTGGATTGGGTTGAAAAACCGGAAGGAG
GCATTTCAAACCAGGGGAAGGATGCCTCTACGCGGAGGATTCTGAGTTAT
GTGAATTTTTTGTTGTGAACATACTGGAATAATAATGTGTAATTTATATA
TATATATGCATATAGTTACATATCTTTTAATGTTGATTCGGGACGCGGGC
CTATCGTAGAACGAAACTGCAGGGTGACGAGTCTCGCGTCGGGCGCAAGC
GCTTTGAGGAGGAAGTTTTATATTTACTTTGTTTTGTCGCGTTATCCCCC
AAGCTCAGCTTTTCGCGCGCGTCGCGCTTGTGTCGCAGGACGCGCTGGAG
CACTACAGCCAGTCCATGTCGGATACGAGGGCATCGCACGACCCCCTGTG
GCACGCAGGGTGTCTCGAGGGCTACGCGGCGTGTCTGGCGGCGATGAGCG
ATGCGGATCACCCGACCGTACACGGAGACCAGGCGCTCGCCCTCGTGCGA
GACATGGCCAAAGACAGGGAACTCGAGAAGGCGGGGCAGGAGGGAAACTC
CACGTGGACCGTGCTCGCCGAAGGTTTGGTTTGATTTGATTTGATTTAAT
TTGGATTGGTTTAGTCATCGACTTGGCGGTGGACTACTTAGTGTTGGCGA
CACACACTCGTTTAAGCATTGCGCGGATGCGGTGCGGCTTTCTGTGGCGT
AGGATTCCCACTTTCATCGAGAGGTCGAAGTCGTAATGTTCACATCGGGT
TTTGTGGTGGATGGATAAAGGTGAAGCTGTTGGTCCCCCACGCTATTCCT
CTGGCTGGATATTATCGCGTGTGTGTGTTTGTGTGTGTATGGTTGTAAAA
AAGGAAGGGGGTTAGGGTTACGTTAGGCTGGCTTACCCATATGGACAAAG
AGGAAGAGCCCAGTCTTCTCCAATACTATGGGCACTGTAAAGCGTATGGG
CGGTCATCGTGTGGTCCGACCTCCAACACGCAGCCCAGCCCTGCTTACCC
TTTGGCGAACATTTTAGAAGCAATCCTTCTGCGTCCCCCGTCCCCCACCC
TCCGCCCCAAGAGAGGCCACACCTCGCCTCCCTCTCGCATACGGCCTCCT
TTGCGCTCGTCCAACTCTCACCACTGGATTTATCCGTGCGTTTTTCTGTT
TATATTGTATTGTCTCCCATTCCCCCTACCCATCCCCCACCAACCCGAGA
AAGCCGTGATATCAGAGAAATGCGAAGAGGCGTTATCAGTACTCAGTCGA
TACTCTCTTCTCGGGGCCCTGGAGGTGGAGCTGTGTTTCAAGACGGCAAG
GTTTCACGCGTGCGCGCAGCCAAGCCCCCGGTGA

Coding sequence (CDS) from alignment at H-elongata_contig102486:325..1858+

>mRNA_H-elongata_contig102486.218.1 ID=mRNA_H-elongata_contig102486.218.1|Name=mRNA_H-elongata_contig102486.218.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=972bp|location=Sequence derived from alignment at H-elongata_contig102486:325..1858+ (Himanthalia elongata Himel1 dioecious)
ATGTATAGGTCCTGGTACGATCGGGAAGAAGGGGTCAGCGACAGCCGGAG
CGCCAAGCGTCGCCAGGGTCGCTTGCACAAGTGGATCGGAGATACTTGCT
TACTCCTCGGGTCACCGAAGATGTATAGGTCCTGGTACGATCGGGAAGAA
GGGGTCAGCGACAGCCGGAGCGCCAAGCGTCGCCAGGGTCGCTTGCACAA
GTGGATCGGAGATACTTGCTTACTCCTCGGGTCACCGAAGGACGCGCTGG
AGCACTACAGCCAGTCCATGTCGGATACGAGGGCATCGCACGACCCCCTG
TGGCACGCAGGGTGTCTCGAGGGCTACGCGGCGTGTCTGGCGGCGATGAG
CGATGCGGATCACCCGACCGTACACGGAGACCAGGCGCTCGCCCTCGTGC
GAGACATGGCCAAAGACAGGGAACTCGAGAAGGCGGGGCAGGAGGGAAAC
TCCACGTGGACCGTGCTCGCCGAAGGACGCGCTGGAGCACTACAGCCAGT
CCATGTCGGATACGAGGGCATCGCACGACCCCCTGTGGCACGCAGGGTGT
CTCGAGGGCTACGCGGCGTGTCTGGCGGCGATGAGCGATGCGGATCACCC
GACCGTACACGGAGACCAGGCGCTCGCCCTCGTGCGAGACATGGCCAAAG
ACAGGGAACTCGAGAAGGCGGGGCAGGAGGGAAACTCCACGTGGACCGTG
CTCGCCGAAGCCGTGATATCAGAGAAATGCGAAGAGGCGTTATCAGTACT
CAGTCGATACTCTCTTCTCGGGGCCCTGGAGGTGGAGCTGTGTTTCAAGA
CGGCAAGGTTTCACGCGTGCGCGCAGCCAAGCCCCCGGTGACCGTGATAT
CAGAGAAATGCGAAGAGGCGTTATCAGTACTCAGTCGATACTCTCTTCTC
GGGGCCCTGGAGGTGGAGCTGTGTTTCAAGACGGCAAGGTTTCACGCGTG
CGCGCAGCCAAGCCCCCGGTGA