prot_H-elongata_contig102462.216.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig102462.216.1
Unique Nameprot_H-elongata_contig102462.216.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length83
Homology
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BLAST of mRNA_H-elongata_contig102462.216.1 vs. uniprot
Match: D8LCJ2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCJ2_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 6.790e-15
Identity = 48/83 (57.83%), Postives = 51/83 (61.45%), Query Frame = 0 
Query:    1 VGEIARAAAIFEVDEIVVYDDLSVSRKGNGGVRDDSCTNGSSLTGIAGKGGGEGGGMFTAGRGSGHHDRNNPNVFMARLLQVA 83
            VGEIARAAA+FEVDEIVVYDDLSVSRKG GGVRDDS +                             D+NNPNVFMARLLQ A
Sbjct:  264 VGEIARAAAVFEVDEIVVYDDLSVSRKGQGGVRDDSASVAXXXXXXX--------XXXXXXXXXXXXDKNNPNVFMARLLQYA 338
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102462.216.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCJ2_ECTSI6.790e-1557.83Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003750Putative RNA methyltransferasePFAMPF02598Methyltrn_RNA_3coord: 1..81
e-value: 9.3E-9
score: 35.2
IPR029028Alpha/beta knot methyltransferasesSUPERFAMILY75217alpha/beta knotcoord: 2..81

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig102462contigH-elongata_contig102462:1517..1765 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig102462.216.1mRNA_H-elongata_contig102462.216.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig102462 1517..1765 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig102462.216.1 ID=prot_H-elongata_contig102462.216.1|Name=mRNA_H-elongata_contig102462.216.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp
VGEIARAAAIFEVDEIVVYDDLSVSRKGNGGVRDDSCTNGSSLTGIAGKG
GGEGGGMFTAGRGSGHHDRNNPNVFMARLLQVA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003750Put_MeTrfase
IPR029028Alpha/beta_knot_MTases