prot_H-elongata_contig102402.212.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig102402.212.1
Unique Name	prot_H-elongata_contig102402.212.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	254

Homology

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BLAST of mRNA_H-elongata_contig102402.212.1 vs. uniprot
Match: D7FK49_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK49_ECTSI)

HSP 1 Score: 262 bits (669), Expect = 2.290e-80
Identity = 162/309 (52.43%), Postives = 183/309 (59.22%), Query Frame = 0

Query:    6 DPTQGKSEEEAGPVVHEHSDAWGFAWMPAIENFVEQAVSEDEXXXXXRDGDANATGDKKALPKAVRREEDTGVEL----GDVTSSGRCG--------------------------------------------------RKRRRPRPRSYNETLLADKAFHNPQASETMADAYGILRPASFVLDVRDDDR----TLGVVGSG-KGAT-EGNDVNAEVRGDGGGRDDRGWFYDTVRDRQNRLWADSRVRKGVELARKGQHQAAVDVYTQALGMCPDHDDGLVARGAAFATTGRLRQATQDLSRALSLNPQ 254
            DP  G  EE+AG  V+EH+D WGF+WMPAIE+FVEQA    +          N     ++ P       DT        G  T++ R                                                         PRP SYNETLLADK+FHNP ASETMADA+GILRPASFVLDV +DDR      GV  +G KGAT EG +  A+V    GG +D+ WFYDTVRDRQNRLWAD+RVRKGVELARKGQHQAA+D YTQALGMCPDHDDGLVARGAAFATTGRLRQA QDLSRALS+NPQ
Sbjct:   52 DPPNG-DEEDAGASVNEHADTWGFSWMPAIEDFVEQAAEAQQQ---------NXXXXXESSPLGANYRSDTDXXXXXLRGPPTNTSRSSFCDPTSPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPRPPSYNETLLADKSFHNPHASETMADAFGILRPASFVLDVGEDDRPWGGAAGVAAAGAKGATAEGGE--ADVTTGHGGSEDQNWFYDTVRDRQNRLWADTRVRKGVELARKGQHQAAIDTYTQALGMCPDHDDGLVARGAAFATTGRLRQAVQDLSRALSVNPQ 348

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BLAST of mRNA_H-elongata_contig102402.212.1 vs. uniprot
Match: A0A836CKS1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKS1_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 1.160e-13
Identity = 45/106 (42.45%), Postives = 56/106 (52.83%), Query Frame = 0

Query:  120 MADAYGILRPASFVLDVRDDDRTLGVVGSGKGATEGNDVNAEVRGDGGGRDDRGWFYDTVRDRQNRLWADSRVRKGVELARKGQHQAAVDVYTQALGMCPDHDDGL 225
            MA A+ + RP SF +DV  D         G GA                   R WF++ +R+RQ+R WAD+RV KG ELAR GQH AA+  Y QALGMC  H D +
Sbjct:    1 MASAFRVCRPLSFAVDVAAD---------GAGA-------------------RDWFFEDLRERQDRTWADTRVAKGAELARSGQHAAAIKYYDQALGMCAGHVDAV 78

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BLAST of mRNA_H-elongata_contig102402.212.1 vs. uniprot
Match: L1I460_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1I460_GUITC)

HSP 1 Score: 55.1 bits (131), Expect = 2.250e-6
Identity = 28/78 (35.90%), Postives = 43/78 (55.13%), Query Frame = 0

Query:  176 YDTVRDRQNRLWADSRVRKGVELARKGQHQAAVDVYTQALGMCPDHDDGLVARGAAFATTGRLRQATQDLSRALSLNP 253
            Y  +R +QN  WA+  VRKG+  A    +  A+  Y  AL +  ++ D  VA GAA+A T +  +A +  S+AL + P
Sbjct:    3 YSELRKKQNVSWANESVRKGIHHAADRNYVMAIKCYQNALELDSENADAYVALGAAYANTSKSHEAIEAFSKALEIQP 80

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig102402.212.1 vs. uniprot

BLAST of mRNA_H-elongata_contig102402.212.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
D7FK49_ECTSI	2.290e-80	52.43	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A836CKS1_9STRA	1.160e-13	42.45	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
L1I460_GUITC	2.250e-6	35.90	Uncharacterized protein (Fragment) n=1 Tax=Guillar...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10		coord: 177..254 e-value: 1.8E-12 score: 49.0
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 187..254
IPR039190	Tetratricopeptide repeat protein 14	PANTHER	PTHR23184	FAMILY NOT NAMED	coord: 64..253
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 188..221 score: 8.437
IPR019734	Tetratricopeptide repeat	PROSITE	PS50005	TPR	coord: 222..254 score: 6.372
IPR013026	Tetratricopeptide repeat-containing domain	PROSITE	PS50293	TPR_REGION	coord: 188..254 score: 16.638

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig102402	contig	H-elongata_contig102402:1..1498 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig102402.212.1	mRNA_H-elongata_contig102402.212.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig102402 1..1498 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig102402.212.1 ID=prot_H-elongata_contig102402.212.1|Name=mRNA_H-elongata_contig102402.212.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=254bp
MQIPTDPTQGKSEEEAGPVVHEHSDAWGFAWMPAIENFVEQAVSEDESDD
DSRDGDANATGDKKALPKAVRREEDTGVELGDVTSSGRCGRKRRRPRPRS
YNETLLADKAFHNPQASETMADAYGILRPASFVLDVRDDDRTLGVVGSGK
GATEGNDVNAEVRGDGGGRDDRGWFYDTVRDRQNRLWADSRVRKGVELAR
KGQHQAAVDVYTQALGMCPDHDDGLVARGAAFATTGRLRQATQDLSRALS
LNPQ

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR039190	TTC14
IPR019734	TPR_repeat
IPR013026	TPR-contain_dom