mRNA_H-elongata_contig102402.212.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-elongata_contig102402.212.1 vs. uniprot
Match: D7FK49_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK49_ECTSI) HSP 1 Score: 262 bits (669), Expect = 2.290e-80 Identity = 162/309 (52.43%), Postives = 183/309 (59.22%), Query Frame = 1 Query: 16 DPTQGKSEEEAGPVVHEHSDAWGFAWMPAIENFVEQAVSEDEXXXXXRDGDANATGDKKALPKAVRREEDTGVEL----GDVTSSGRCG--------------------------------------------------RKRRRPRPRSYNETLLADKAFHNPQASETMADAYGILRPASFVLDVRDDDR----TLGVVGSG-KGAT-EGNDVNAEVRGDGGGRDDRGWFYDTVRDRQNRLWADSRVRKGVELARKGQHQAAVDVYTQALGMCPDHDDGLVARGAAFATTGRLRQATQDLSRALSLNPQ 762
DP G EE+AG V+EH+D WGF+WMPAIE+FVEQA + N ++ P DT G T++ R PRP SYNETLLADK+FHNP ASETMADA+GILRPASFVLDV +DDR GV +G KGAT EG + A+V GG +D+ WFYDTVRDRQNRLWAD+RVRKGVELARKGQHQAA+D YTQALGMCPDHDDGLVARGAAFATTGRLRQA QDLSRALS+NPQ
Sbjct: 52 DPPNG-DEEDAGASVNEHADTWGFSWMPAIEDFVEQAAEAQQQ---------NXXXXXESSPLGANYRSDTDXXXXXLRGPPTNTSRSSFCDPTSPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPRPPSYNETLLADKSFHNPHASETMADAFGILRPASFVLDVGEDDRPWGGAAGVAAAGAKGATAEGGE--ADVTTGHGGSEDQNWFYDTVRDRQNRLWADTRVRKGVELARKGQHQAAIDTYTQALGMCPDHDDGLVARGAAFATTGRLRQAVQDLSRALSVNPQ 348
BLAST of mRNA_H-elongata_contig102402.212.1 vs. uniprot
Match: A0A836CKS1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKS1_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 1.160e-13 Identity = 45/106 (42.45%), Postives = 56/106 (52.83%), Query Frame = 1 Query: 358 MADAYGILRPASFVLDVRDDDRTLGVVGSGKGATEGNDVNAEVRGDGGGRDDRGWFYDTVRDRQNRLWADSRVRKGVELARKGQHQAAVDVYTQALGMCPDHDDGL 675
MA A+ + RP SF +DV D G GA R WF++ +R+RQ+R WAD+RV KG ELAR GQH AA+ Y QALGMC H D +
Sbjct: 1 MASAFRVCRPLSFAVDVAAD---------GAGA-------------------RDWFFEDLRERQDRTWADTRVAKGAELARSGQHAAAIKYYDQALGMCAGHVDAV 78
BLAST of mRNA_H-elongata_contig102402.212.1 vs. uniprot
Match: L1I460_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1I460_GUITC) HSP 1 Score: 55.1 bits (131), Expect = 2.250e-6 Identity = 28/78 (35.90%), Postives = 43/78 (55.13%), Query Frame = 1 Query: 526 YDTVRDRQNRLWADSRVRKGVELARKGQHQAAVDVYTQALGMCPDHDDGLVARGAAFATTGRLRQATQDLSRALSLNP 759
Y +R +QN WA+ VRKG+ A + A+ Y AL + ++ D VA GAA+A T + +A + S+AL + P
Sbjct: 3 YSELRKKQNVSWANESVRKGIHHAADRNYVMAIKCYQNALELDSENADAYVALGAAYANTSKSHEAIEAFSKALEIQP 80 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig102402.212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig102402.212.1 >prot_H-elongata_contig102402.212.1 ID=prot_H-elongata_contig102402.212.1|Name=mRNA_H-elongata_contig102402.212.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=254bp MQIPTDPTQGKSEEEAGPVVHEHSDAWGFAWMPAIENFVEQAVSEDESDDback to top mRNA from alignment at H-elongata_contig102402:1..1498- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig102402.212.1 ID=mRNA_H-elongata_contig102402.212.1|Name=mRNA_H-elongata_contig102402.212.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1498bp|location=Sequence derived from alignment at H-elongata_contig102402:1..1498- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig102402:1..1498- >mRNA_H-elongata_contig102402.212.1 ID=mRNA_H-elongata_contig102402.212.1|Name=mRNA_H-elongata_contig102402.212.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1524bp|location=Sequence derived from alignment at H-elongata_contig102402:1..1498- (Himanthalia elongata Himel1 dioecious)back to top |