prot_H-elongata_contig10238.209.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig10238.209.1
Unique Nameprot_H-elongata_contig10238.209.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length121
Homology
BLAST of mRNA_H-elongata_contig10238.209.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.560e-21
Identity = 55/121 (45.45%), Postives = 75/121 (61.98%), Query Frame = 0
Query:    1 MWLAIMTRLDIASSVHACAHYSDDPSLRHWKAVLQIAMHMNITNEICLKFIHGS--GLRLSAYADANFAVASNDLRSVSDGAVILDDTVMAWKSSTQKCVTTSTCEAEFLTLCDASKDALF 119
            MWLA  TR DIA++V A A Y   P   HW+A L I  ++  T+++ + F  GS  GL +  +ADA++A  + D RSVS G V+     M+W S TQKCVT ST EAE+++L D  K+ LF
Sbjct:   41 MWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCMSWFSRTQKCVTLSTTEAEYVSLADVMKEVLF 161          
BLAST of mRNA_H-elongata_contig10238.209.1 vs. uniprot
Match: A0A6H5KLT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLT9_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 3.130e-21
Identity = 56/121 (46.28%), Postives = 70/121 (57.85%), Query Frame = 0
Query:    1 MWLAIMTRLDIASSVHACAHYSDDPSLRHWKAVLQIAMHMNITNEICLKFIHGS--GLRLSAYADANFAVASNDLRSVSDGAVILDDTVMAWKSSTQKCVTTSTCEAEFLTLCDASKDALF 119
            MWLA  TR DIA++V A A Y   P+L HW A + I      T+   + F  G+  GL L  YADA+FA  + D RSVS G V      ++W S TQKCVT ST EAE++ L D  K+ LF
Sbjct:  113 MWLATQTRPDIANAVRAVARYCASPTLVHWNAAMDILGDARRTSHFGISFQRGTVEGLSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILF 233          
BLAST of mRNA_H-elongata_contig10238.209.1 vs. uniprot
Match: A0A6H5KRB4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRB4_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 7.030e-21
Identity = 55/121 (45.45%), Postives = 69/121 (57.02%), Query Frame = 0
Query:    1 MWLAIMTRLDIASSVHACAHYSDDPSLRHWKAVLQIAMHMNITNEICLKFIHGS--GLRLSAYADANFAVASNDLRSVSDGAVILDDTVMAWKSSTQKCVTTSTCEAEFLTLCDASKDALF 119
            MWLA  TR DIA++V A A Y   P L HW A + I  +   T+   + F  G+  G  L  YADA+FA  + D RSVS G V      ++W S TQKCVT ST EAE++ L D  K+ LF
Sbjct:  107 MWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILF 227          
BLAST of mRNA_H-elongata_contig10238.209.1 vs. uniprot
Match: A0A6H5JWA6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA6_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.020e-20
Identity = 53/121 (43.80%), Postives = 74/121 (61.16%), Query Frame = 0
Query:    1 MWLAIMTRLDIASSVHACAHYSDDPSLRHWKAVLQIAMHMNITNEICLKFIHG--SGLRLSAYADANFAVASNDLRSVSDGAVILDDTVMAWKSSTQKCVTTSTCEAEFLTLCDASKDALF 119
            +W+A++TR DIA+SV A A YS  P L HWKA L I  +   T+ + + F  G  SG  L A+ DA++A  + D RSVS G V+     +AW S TQ CVT ST ++E++ + D  K+ LF
Sbjct:  542 LWIALLTRPDIANSVRAVARYSSAPKLIHWKAALSILGYAFRTSSLGISFQRGTVSGFTLIAFVDADYASRAADRRSVSGGVVMCAGGAIAWFSKTQTCVTLSTTQSEYVAMADMGKEILF 662          
BLAST of mRNA_H-elongata_contig10238.209.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.040e-20
Identity = 52/121 (42.98%), Postives = 74/121 (61.16%), Query Frame = 0
Query:    1 MWLAIMTRLDIASSVHACAHYSDDPSLRHWKAVLQIAMHMNITNEICLKFIHG--SGLRLSAYADANFAVASNDLRSVSDGAVILDDTVMAWKSSTQKCVTTSTCEAEFLTLCDASKDALF 119
            +W+A++TR DIA++V A A Y  +P L HW+A L I  +   T+   + F  G  SG  L  +ADA++A  + D RSVS G V+     +AW S TQKCVT ST +AE++ + D  K+ LF
Sbjct:  171 LWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILF 291          
BLAST of mRNA_H-elongata_contig10238.209.1 vs. uniprot
Match: A0A6H5L7D7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7D7_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.350e-20
Identity = 53/121 (43.80%), Postives = 72/121 (59.50%), Query Frame = 0
Query:    1 MWLAIMTRLDIASSVHACAHYSDDPSLRHWKAVLQIAMHMNITNEICLKFIHG--SGLRLSAYADANFAVASNDLRSVSDGAVILDDTVMAWKSSTQKCVTTSTCEAEFLTLCDASKDALF 119
            +W+A++TR DIA+SV A A Y   P L HWKA L I  +   T  + +    G  SG  L A+ DA++A  + D RSVS G V+     +AW S TQKCVT ST +AE++ + D  K+ LF
Sbjct:  776 LWIALLTRPDIANSVRAVARYCSAPKLIHWKAALSILGYAVRTGSLGISIKRGTVSGFSLIAFVDADYASRAADRRSVSGGGVMCSGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILF 896          
BLAST of mRNA_H-elongata_contig10238.209.1 vs. uniprot
Match: A0A6H5JRZ9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ9_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.120e-20
Identity = 53/121 (43.80%), Postives = 73/121 (60.33%), Query Frame = 0
Query:    1 MWLAIMTRLDIASSVHACAHYSDDPSLRHWKAVLQIAMHMNITNEICLKFIHG--SGLRLSAYADANFAVASNDLRSVSDGAVILDDTVMAWKSSTQKCVTTSTCEAEFLTLCDASKDALF 119
            +W+A++TR DIA+SV A A YS  P L HWKA L I  +   T+   + F  G  SG  L  + +A++A  + D RSVS G V+     +AW S TQKCVT ST +AE++ + D  K+ LF
Sbjct:  223 LWIALLTRPDIANSVRAVARYSGAPKLIHWKAALSILGYAVRTSSFGISFQSGTVSGFSLITFVNADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILF 343          
BLAST of mRNA_H-elongata_contig10238.209.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.420e-20
Identity = 55/121 (45.45%), Postives = 69/121 (57.02%), Query Frame = 0
Query:    1 MWLAIMTRLDIASSVHACAHYSDDPSLRHWKAVLQIAMHMNITNEICLKFIHGS--GLRLSAYADANFAVASNDLRSVSDGAVILDDTVMAWKSSTQKCVTTSTCEAEFLTLCDASKDALF 119
            MWLA  TR DIA++V A A Y   P L HW A + I  +   T+   + F  G+  G  L  YADA+FA  + D RSVS G V      ++W S TQKCVT ST EAE++ L D  K+ LF
Sbjct:  249 MWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILF 369          
BLAST of mRNA_H-elongata_contig10238.209.1 vs. uniprot
Match: A0A6H5KEZ8_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ8_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 2.440e-20
Identity = 54/121 (44.63%), Postives = 68/121 (56.20%), Query Frame = 0
Query:    1 MWLAIMTRLDIASSVHACAHYSDDPSLRHWKAVLQIAMHMNITNEICLKFIHGS--GLRLSAYADANFAVASNDLRSVSDGAVILDDTVMAWKSSTQKCVTTSTCEAEFLTLCDASKDALF 119
            MWLA  TR DIA++V A A Y   P L HW A + I  +   T+   + F  G+  G  L  YADA+FA  + D RSVS G V      ++W S TQKCVT ST EAE++ L +  K  LF
Sbjct:    3 MWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGEVVKVILF 123          
BLAST of mRNA_H-elongata_contig10238.209.1 vs. uniprot
Match: A0A6H5JR13_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR13_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 2.470e-20
Identity = 52/121 (42.98%), Postives = 74/121 (61.16%), Query Frame = 0
Query:    1 MWLAIMTRLDIASSVHACAHYSDDPSLRHWKAVLQIAMHMNITNEICLKFIHG--SGLRLSAYADANFAVASNDLRSVSDGAVILDDTVMAWKSSTQKCVTTSTCEAEFLTLCDASKDALF 119
            +W+A++TR DIA++V A A Y  +P L HW+A L I  +   T+   + F  G  SG  L  +ADA++A  + D RSVS G V+     +AW S TQKCVT ST +AE++ + D  K+ LF
Sbjct:  475 LWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILF 595          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10238.209.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JTK6_9PHAE1.560e-2145.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLT9_9PHAE3.130e-2146.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRB4_9PHAE7.030e-2145.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWA6_9PHAE1.020e-2043.80Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JWK8_9PHAE1.040e-2042.98Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L7D7_9PHAE1.350e-2043.80Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JRZ9_9PHAE2.120e-2043.80Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JFG2_9PHAE2.420e-2045.45Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KEZ8_9PHAE2.440e-2044.63Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR13_9PHAE2.470e-2042.98Integrase catalytic domain-containing protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 6..117
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 6..117

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig10238contigH-elongata_contig10238:5987..6349 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig10238.209.1mRNA_H-elongata_contig10238.209.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig10238 5960..6349 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig10238.209.1 ID=prot_H-elongata_contig10238.209.1|Name=mRNA_H-elongata_contig10238.209.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
MWLAIMTRLDIASSVHACAHYSDDPSLRHWKAVLQIAMHMNITNEICLKF
IHGSGLRLSAYADANFAVASNDLRSVSDGAVILDDTVMAWKSSTQKCVTT
STCEAEFLTLCDASKDALFT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like