mRNA_H-elongata_contig10238.209.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_H-elongata_contig10238.209.1 vs. uniprot
Match: A0A6H5JTK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTK6_9PHAE) HSP 1 Score: 103 bits (257), Expect = 2.500e-24 Identity = 59/129 (45.74%), Postives = 81/129 (62.79%), Query Frame = 1 Query: 4 YRALVESLMWLAIMTRLDIASSVHACAHYSDDPSLRHWKAVLQIAMHMNITNEICLKFIHGS--GLRLSAYADANFAVASNDLRSVSDGAVILDDTVMAWKSSTQKCVTTSTCEAEFLTLCDASKDALF 384
+R L+ SLMWLA TR DIA++V A A Y P HW+A L I ++ T+++ + F GS GL + +ADA++A + D RSVS G V+ M+W S TQKCVT ST EAE+++L D K+ LF
Sbjct: 33 FRELIGSLMWLATQTRPDIANAVRAVARYCASPKEIHWRAGLGILGYVVRTSDLGITFRRGSVAGLSMEVFADADYASKAADRRSVSGGLVMCGGGCMSWFSRTQKCVTLSTTEAEYVSLADVMKEVLF 161
BLAST of mRNA_H-elongata_contig10238.209.1 vs. uniprot
Match: A0A6H5KLT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLT9_9PHAE) HSP 1 Score: 103 bits (257), Expect = 3.730e-24 Identity = 61/129 (47.29%), Postives = 76/129 (58.91%), Query Frame = 1 Query: 4 YRALVESLMWLAIMTRLDIASSVHACAHYSDDPSLRHWKAVLQIAMHMNITNEICLKFIHGS--GLRLSAYADANFAVASNDLRSVSDGAVILDDTVMAWKSSTQKCVTTSTCEAEFLTLCDASKDALF 384
+R LV SLMWLA TR DIA++V A A Y P+L HW A + I T+ + F G+ GL L YADA+FA + D RSVS G V ++W S TQKCVT ST EAE++ L D K+ LF
Sbjct: 105 FRELVGSLMWLATQTRPDIANAVRAVARYCASPTLVHWNAAMDILGDARRTSHFGISFQRGTVEGLSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILF 233
BLAST of mRNA_H-elongata_contig10238.209.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE) HSP 1 Score: 104 bits (260), Expect = 3.890e-24 Identity = 57/129 (44.19%), Postives = 81/129 (62.79%), Query Frame = 1 Query: 4 YRALVESLMWLAIMTRLDIASSVHACAHYSDDPSLRHWKAVLQIAMHMNITNEICLKFIHG--SGLRLSAYADANFAVASNDLRSVSDGAVILDDTVMAWKSSTQKCVTTSTCEAEFLTLCDASKDALF 384
+RAL+ SL+W+A++TR DIA++V A A Y +P L HW+A L I + T+ + F G SG L +ADA++A + D RSVS G V+ +AW S TQKCVT ST +AE++ + D K+ LF
Sbjct: 163 FRALIGSLLWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILF 291
BLAST of mRNA_H-elongata_contig10238.209.1 vs. uniprot
Match: A0A6H5L7D7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7D7_9PHAE) HSP 1 Score: 105 bits (263), Expect = 5.900e-24 Identity = 59/129 (45.74%), Postives = 79/129 (61.24%), Query Frame = 1 Query: 4 YRALVESLMWLAIMTRLDIASSVHACAHYSDDPSLRHWKAVLQIAMHMNITNEICLKFIHG--SGLRLSAYADANFAVASNDLRSVSDGAVILDDTVMAWKSSTQKCVTTSTCEAEFLTLCDASKDALF 384
+RALV SL+W+A++TR DIA+SV A A Y P L HWKA L I + T + + G SG L A+ DA++A + D RSVS G V+ +AW S TQKCVT ST +AE++ + D K+ LF
Sbjct: 768 FRALVGSLLWIALLTRPDIANSVRAVARYCSAPKLIHWKAALSILGYAVRTGSLGISIKRGTVSGFSLIAFVDADYASRAADRRSVSGGGVMCSGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILF 896
BLAST of mRNA_H-elongata_contig10238.209.1 vs. uniprot
Match: A0A6H5JRZ9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ9_9PHAE) HSP 1 Score: 104 bits (260), Expect = 6.530e-24 Identity = 59/129 (45.74%), Postives = 80/129 (62.02%), Query Frame = 1 Query: 4 YRALVESLMWLAIMTRLDIASSVHACAHYSDDPSLRHWKAVLQIAMHMNITNEICLKFIHG--SGLRLSAYADANFAVASNDLRSVSDGAVILDDTVMAWKSSTQKCVTTSTCEAEFLTLCDASKDALF 384
+RALV SL+W+A++TR DIA+SV A A YS P L HWKA L I + T+ + F G SG L + +A++A + D RSVS G V+ +AW S TQKCVT ST +AE++ + D K+ LF
Sbjct: 215 FRALVGSLLWIALLTRPDIANSVRAVARYSGAPKLIHWKAALSILGYAVRTSSFGISFQSGTVSGFSLITFVNADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILF 343
BLAST of mRNA_H-elongata_contig10238.209.1 vs. uniprot
Match: A0A6H5KRB4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRB4_9PHAE) HSP 1 Score: 102 bits (255), Expect = 8.600e-24 Identity = 60/129 (46.51%), Postives = 75/129 (58.14%), Query Frame = 1 Query: 4 YRALVESLMWLAIMTRLDIASSVHACAHYSDDPSLRHWKAVLQIAMHMNITNEICLKFIHGS--GLRLSAYADANFAVASNDLRSVSDGAVILDDTVMAWKSSTQKCVTTSTCEAEFLTLCDASKDALF 384
+R LV SLMWLA TR DIA++V A A Y P L HW A + I + T+ + F G+ G L YADA+FA + D RSVS G V ++W S TQKCVT ST EAE++ L D K+ LF
Sbjct: 99 FRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILF 227
BLAST of mRNA_H-elongata_contig10238.209.1 vs. uniprot
Match: A0A6H5JR13_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR13_9PHAE) HSP 1 Score: 104 bits (260), Expect = 1.470e-23 Identity = 57/129 (44.19%), Postives = 81/129 (62.79%), Query Frame = 1 Query: 4 YRALVESLMWLAIMTRLDIASSVHACAHYSDDPSLRHWKAVLQIAMHMNITNEICLKFIHG--SGLRLSAYADANFAVASNDLRSVSDGAVILDDTVMAWKSSTQKCVTTSTCEAEFLTLCDASKDALF 384
+RAL+ SL+W+A++TR DIA++V A A Y +P L HW+A L I + T+ + F G SG L +ADA++A + D RSVS G V+ +AW S TQKCVT ST +AE++ + D K+ LF
Sbjct: 467 FRALIGSLLWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILF 595
BLAST of mRNA_H-elongata_contig10238.209.1 vs. uniprot
Match: A0A6H5JWA6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA6_9PHAE) HSP 1 Score: 104 bits (260), Expect = 1.550e-23 Identity = 58/129 (44.96%), Postives = 80/129 (62.02%), Query Frame = 1 Query: 4 YRALVESLMWLAIMTRLDIASSVHACAHYSDDPSLRHWKAVLQIAMHMNITNEICLKFIHG--SGLRLSAYADANFAVASNDLRSVSDGAVILDDTVMAWKSSTQKCVTTSTCEAEFLTLCDASKDALF 384
+R LV SL+W+A++TR DIA+SV A A YS P L HWKA L I + T+ + + F G SG L A+ DA++A + D RSVS G V+ +AW S TQ CVT ST ++E++ + D K+ LF
Sbjct: 534 FRGLVGSLLWIALLTRPDIANSVRAVARYSSAPKLIHWKAALSILGYAFRTSSLGISFQRGTVSGFTLIAFVDADYASRAADRRSVSGGVVMCAGGAIAWFSKTQTCVTLSTTQSEYVAMADMGKEILF 662
BLAST of mRNA_H-elongata_contig10238.209.1 vs. uniprot
Match: A0A6H5KG67_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG67_9PHAE) HSP 1 Score: 103 bits (257), Expect = 3.160e-23 Identity = 60/129 (46.51%), Postives = 78/129 (60.47%), Query Frame = 1 Query: 4 YRALVESLMWLAIMTRLDIASSVHACAHYSDDPSLRHWKAVLQIAMHMNITNEICLKFIHG--SGLRLSAYADANFAVASNDLRSVSDGAVILDDTVMAWKSSTQKCVTTSTCEAEFLTLCDASKDALF 384
+RALV SL+W+A++TR DIA+SV A A YS P L HWKA L I + T+ + F G SG L + DA++A + D RSVS G V+ +AW S QKCVT ST AEF+ + D K+ LF
Sbjct: 217 FRALVGSLLWIALLTRPDIANSVRAVARYSGAPKLIHWKAALSILGYAVRTSSFGICFQRGTVSGFTLITFVDADYASRAADRRSVSGGVVMCAGGAIAWFSKAQKCVTLSTTPAEFVAVADMGKEILF 345
BLAST of mRNA_H-elongata_contig10238.209.1 vs. uniprot
Match: A0A6H5JFG2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFG2_9PHAE) HSP 1 Score: 102 bits (255), Expect = 3.980e-23 Identity = 60/129 (46.51%), Postives = 75/129 (58.14%), Query Frame = 1 Query: 4 YRALVESLMWLAIMTRLDIASSVHACAHYSDDPSLRHWKAVLQIAMHMNITNEICLKFIHGS--GLRLSAYADANFAVASNDLRSVSDGAVILDDTVMAWKSSTQKCVTTSTCEAEFLTLCDASKDALF 384
+R LV SLMWLA TR DIA++V A A Y P L HW A + I + T+ + F G+ G L YADA+FA + D RSVS G V ++W S TQKCVT ST EAE++ L D K+ LF
Sbjct: 241 FRELVGSLMWLATQTRPDIANAVRAVARYCASPKLVHWNAAMDILGYARRTSHFGISFQRGTVEGFSLQGYADADFASKAADRRSVSGGIVTCGGGAVSWFSRTQKCVTLSTTEAEYVALGDVVKEILF 369 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig10238.209.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig10238.209.1 >prot_H-elongata_contig10238.209.1 ID=prot_H-elongata_contig10238.209.1|Name=mRNA_H-elongata_contig10238.209.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp MWLAIMTRLDIASSVHACAHYSDDPSLRHWKAVLQIAMHMNITNEICLKFback to top mRNA from alignment at H-elongata_contig10238:5960..6349+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig10238.209.1 ID=mRNA_H-elongata_contig10238.209.1|Name=mRNA_H-elongata_contig10238.209.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=390bp|location=Sequence derived from alignment at H-elongata_contig10238:5960..6349+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig10238:5960..6349+ >mRNA_H-elongata_contig10238.209.1 ID=mRNA_H-elongata_contig10238.209.1|Name=mRNA_H-elongata_contig10238.209.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig10238:5960..6349+ (Himanthalia elongata Himel1 dioecious)back to top |