prot_H-elongata_contig100875.79.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-elongata_contig100875.79.1
Unique Name	prot_H-elongata_contig100875.79.1
Type	polypeptide
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length	98

Homology

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BLAST of mRNA_H-elongata_contig100875.79.1 vs. uniprot
Match: D8LN84_ECTSI (Ribosomal protein rpl30 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LN84_ECTSI)

HSP 1 Score: 187 bits (475), Expect = 6.700e-60
Identity = 93/97 (95.88%), Postives = 95/97 (97.94%), Query Frame = 0

Query:    1 MNARLQLVMKSGKASLGYKSTIKSMRNTRAKMVLISNNCPPLRKSEIEYLAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDPGDSDILRQGAD 97
            MNARLQLVMKSGKASLGYKSTIKSMR+TRAKMVLISNNCPPLRKSEIEY AMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITD GDSDILRQGA+
Sbjct:   14 MNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAGDSDILRQGAE 110

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BLAST of mRNA_H-elongata_contig100875.79.1 vs. uniprot
Match: A0A835YXX2_9STRA (Ribosomal protein rpl30 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXX2_9STRA)

HSP 1 Score: 162 bits (409), Expect = 7.780e-50
Identity = 76/93 (81.72%), Postives = 86/93 (92.47%), Query Frame = 0

Query:    1 MNARLQLVMKSGKASLGYKSTIKSMRNTRAKMVLISNNCPPLRKSEIEYLAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDPGDSDILR 93
            +N RLQLVM+SGKASLGYK T+K MR ++AKM++ISNNCPPLRKSEIEY A+LAKC VHHY+GSNTDLGTACGKYFRVSVL+ITD GDSDILR
Sbjct:   14 INTRLQLVMRSGKASLGYKQTLKCMRTSKAKMIIISNNCPPLRKSEIEYYALLAKCNVHHYSGSNTDLGTACGKYFRVSVLAITDAGDSDILR 106

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BLAST of mRNA_H-elongata_contig100875.79.1 vs. uniprot
Match: A0A812PA55_SYMMI (RPL30 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812PA55_SYMMI)

HSP 1 Score: 159 bits (403), Expect = 6.600e-49
Identity = 73/93 (78.49%), Postives = 89/93 (95.70%), Query Frame = 0

Query:    1 MNARLQLVMKSGKASLGYKSTIKSMRNTRAKMVLISNNCPPLRKSEIEYLAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDPGDSDILR 93
            +N+RLQLVM+SGKASLGYK+TIK++RNT+AK+V+IS+NCPPLRKSEIEY AMLAKC VHHY G+N+DLGTACGK++RVS+LS+TD GDSDILR
Sbjct:   16 INSRLQLVMRSGKASLGYKTTIKTLRNTKAKLVIISSNCPPLRKSEIEYYAMLAKCTVHHYAGTNSDLGTACGKFYRVSMLSVTDGGDSDILR 108

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BLAST of mRNA_H-elongata_contig100875.79.1 vs. uniprot
Match: L8GX53_ACACA (60S ribosomal protein, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GX53_ACACA)

HSP 1 Score: 154 bits (390), Expect = 6.320e-47
Identity = 73/94 (77.66%), Postives = 84/94 (89.36%), Query Frame = 0

Query:    1 MNARLQLVMKSGKASLGYKSTIKSMRNTRAKMVLISNNCPPLRKSEIEYLAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDPGDSDILRQ 94
            +N+RL LVMKSGK +LGYKST+KS+R  +AK+++IS NCPPLRKSEIEY AMLAK  VHHYTG+N DLGTACGKYFRVS LSITDPGDSDI+RQ
Sbjct:   14 INSRLALVMKSGKYTLGYKSTLKSLRQGKAKLIIISTNCPPLRKSEIEYYAMLAKTGVHHYTGNNIDLGTACGKYFRVSSLSITDPGDSDIIRQ 107

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BLAST of mRNA_H-elongata_contig100875.79.1 vs. uniprot
Match: A0A7S1A6B9_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1A6B9_NOCSC)

HSP 1 Score: 152 bits (383), Expect = 7.610e-46
Identity = 71/93 (76.34%), Postives = 85/93 (91.40%), Query Frame = 0

Query:    1 MNARLQLVMKSGKASLGYKSTIKSMRNTRAKMVLISNNCPPLRKSEIEYLAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDPGDSDILR 93
            +N RL+LVMKSGK +LG+KST+K++RN +AK+VLI++NCPPLRKSEIEY AML+K  VHHYTG N +LGTACGKYFRVSVLSITDPGDSDI+R
Sbjct:   15 INTRLKLVMKSGKYNLGHKSTMKTLRNGKAKLVLIASNCPPLRKSEIEYYAMLSKTGVHHYTGENNELGTACGKYFRVSVLSITDPGDSDIIR 107

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BLAST of mRNA_H-elongata_contig100875.79.1 vs. uniprot
Match: A0A7S2USR9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USR9_9STRA)

HSP 1 Score: 152 bits (384), Expect = 1.690e-45
Identity = 71/93 (76.34%), Postives = 84/93 (90.32%), Query Frame = 0

Query:    1 MNARLQLVMKSGKASLGYKSTIKSMRNTRAKMVLISNNCPPLRKSEIEYLAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDPGDSDILR 93
            MN++LQLVMKSGKASLGYKS+IK++RN +AK+VL+S NCPPLR+SEIEY AMLAK  VHHY G+NTDLGTACGKYFRV VL +T+ GDS+ILR
Sbjct:   53 MNSQLQLVMKSGKASLGYKSSIKALRNNKAKLVLVSKNCPPLRRSEIEYYAMLAKVGVHHYAGNNTDLGTACGKYFRVGVLCVTNAGDSEILR 145

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BLAST of mRNA_H-elongata_contig100875.79.1 vs. uniprot
Match: A0A482SS92_9ARCH (50S ribosomal protein L30e n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SS92_9ARCH)

HSP 1 Score: 151 bits (381), Expect = 1.790e-45
Identity = 67/93 (72.04%), Postives = 87/93 (93.55%), Query Frame = 0

Query:    1 MNARLQLVMKSGKASLGYKSTIKSMRNTRAKMVLISNNCPPLRKSEIEYLAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDPGDSDILR 93
            +N ++QLVMKSGK +LGYK+T+K++R+ +AKMV+ISNN P LRKSE+EY AMLAKC++HHY+G+N+DLGTACGK+FRVS++SITDPGDSDILR
Sbjct:   23 INGKIQLVMKSGKTALGYKTTLKALRSNKAKMVVISNNTPTLRKSEVEYYAMLAKCSIHHYSGNNSDLGTACGKFFRVSMMSITDPGDSDILR 115

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BLAST of mRNA_H-elongata_contig100875.79.1 vs. uniprot
Match: A0A6S7GSE1_PARCT (60S ribosomal protein L30 n=4 Tax=Alcyonacea TaxID=40677 RepID=A0A6S7GSE1_PARCT)

HSP 1 Score: 150 bits (379), Expect = 3.500e-45
Identity = 72/93 (77.42%), Postives = 84/93 (90.32%), Query Frame = 0

Query:    1 MNARLQLVMKSGKASLGYKSTIKSMRNTRAKMVLISNNCPPLRKSEIEYLAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDPGDSDILR 93
            +N+RLQLVMKSGK +LGYKST+K++R  +AK+V+ISNN P LRKSEIEY AMLAK  VHHYTG+N +LGTACGKYFRVSVLSITDPGDSDI+R
Sbjct:   14 INSRLQLVMKSGKYTLGYKSTLKTLRQGKAKLVIISNNTPQLRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVSVLSITDPGDSDIIR 106

[Close]

BLAST of mRNA_H-elongata_contig100875.79.1 vs. uniprot
Match: L1JC58_GUITC (Large subunit ribosomal protein L30e, cytoplasmic n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JC58_GUITC)

HSP 1 Score: 148 bits (374), Expect = 1.630e-44
Identity = 69/93 (74.19%), Postives = 84/93 (90.32%), Query Frame = 0

Query:    1 MNARLQLVMKSGKASLGYKSTIKSMRNTRAKMVLISNNCPPLRKSEIEYLAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDPGDSDILR 93
            +N+RL LVMKSGK +LGYKST+K++R+ ++K+V+I NNCPPLRKSEIEY AMLAK  VHHY+G+N DLGTACGKYFRV+ LSITDPGDSDI+R
Sbjct:   12 INSRLALVMKSGKYTLGYKSTLKTLRSGKSKLVIICNNCPPLRKSEIEYYAMLAKTNVHHYSGNNVDLGTACGKYFRVASLSITDPGDSDIIR 104

[Close]

BLAST of mRNA_H-elongata_contig100875.79.1 vs. uniprot
Match: A0A7S0Q353_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q353_9EUKA)

HSP 1 Score: 148 bits (374), Expect = 2.360e-44
Identity = 70/93 (75.27%), Postives = 81/93 (87.10%), Query Frame = 0

Query:    1 MNARLQLVMKSGKASLGYKSTIKSMRNTRAKMVLISNNCPPLRKSEIEYLAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDPGDSDILR 93
            +NARL LVMKSGK  LGYK T+K++R  +A +V+ISNNCPPLRKSEIEY AML+K  VHHYTG+N DLGTACGKYFRVS LSITDPGDSDI++
Sbjct:   26 INARLALVMKSGKYQLGYKQTLKTLRKGQAWLVIISNNCPPLRKSEIEYYAMLSKAGVHHYTGNNIDLGTACGKYFRVSCLSITDPGDSDIMK 118

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig100875.79.1 vs. uniprot

BLAST of mRNA_H-elongata_contig100875.79.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D8LN84_ECTSI	6.700e-60	95.88	Ribosomal protein rpl30 n=2 Tax=Ectocarpus TaxID=2...	[more]
A0A835YXX2_9STRA	7.780e-50	81.72	Ribosomal protein rpl30 n=1 Tax=Tribonema minus Ta...	[more]
A0A812PA55_SYMMI	6.600e-49	78.49	RPL30 protein n=1 Tax=Symbiodinium microadriaticum...	[more]
L8GX53_ACACA	6.320e-47	77.66	60S ribosomal protein, putative n=1 Tax=Acanthamoe...	[more]
A0A7S1A6B9_NOCSC	7.610e-46	76.34	Hypothetical protein n=1 Tax=Noctiluca scintillans...	[more]
A0A7S2USR9_9STRA	1.690e-45	76.34	Hypothetical protein n=1 Tax=Fibrocapsa japonica T...	[more]
A0A482SS92_9ARCH	1.790e-45	72.04	50S ribosomal protein L30e n=1 Tax=archaeon TaxID=...	[more]
A0A6S7GSE1_PARCT	3.500e-45	77.42	60S ribosomal protein L30 n=4 Tax=Alcyonacea TaxID...	[more]
L1JC58_GUITC	1.630e-44	74.19	Large subunit ribosomal protein L30e, cytoplasmic ...	[more]
A0A7S0Q353_9EUKA	2.360e-44	75.27	Hypothetical protein n=1 Tax=Coccolithus braarudii...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004038	Ribosomal protein L7Ae/L30e/S12e/Gadd45	PFAM	PF01248	Ribosomal_L7Ae	coord: 2..92 e-value: 1.2E-22 score: 79.5
IPR029064	50S ribosomal protein L30e-like	GENE3D	3.30.1330.30		coord: 1..94 e-value: 6.3E-47 score: 159.3
IPR029064	50S ribosomal protein L30e-like	SUPERFAMILY	55315	L30e-like	coord: 2..93
IPR039109	Ribosomal protein L30/YlxQ	PANTHER	PTHR11449	RIBOSOMAL PROTEIN L30	coord: 1..94
IPR022991	Ribosomal protein L30e, conserved site	PROSITE	PS00993	RIBOSOMAL_L30E_2	coord: 67..87

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig100875	contig	H-elongata_contig100875:1296..1589 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig100875.79.1	mRNA_H-elongata_contig100875.79.1	Himanthalia elongata Himel1 dioecious	mRNA	H-elongata_contig100875 1278..1589 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-elongata_contig100875.79.1 ID=prot_H-elongata_contig100875.79.1|Name=mRNA_H-elongata_contig100875.79.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
MNARLQLVMKSGKASLGYKSTIKSMRNTRAKMVLISNNCPPLRKSEIEYL
AMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDPGDSDILRQGAD*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR004038	Ribosomal_L7Ae/L30e/S12e/Gad45
IPR029064	L30e-like
IPR039109	L30/L30e/YlxQ
IPR022991	Ribosomal_L30e_CS