mRNA_H-elongata_contig100875.79.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-elongata_contig100875.79.1 vs. uniprot
Match: D8LN84_ECTSI (Ribosomal protein rpl30 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LN84_ECTSI) HSP 1 Score: 195 bits (496), Expect = 5.380e-63 Identity = 98/103 (95.15%), Postives = 100/103 (97.09%), Query Frame = 1 Query: 1 KKVIESMNARLQLVMKSGKASLGYKSTIKSMRNTRAKMVLISNNCPPLRKSEIEYLAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDPGDSDILRQGAD 309
KK IESMNARLQLVMKSGKASLGYKSTIKSMR+TRAKMVLISNNCPPLRKSEIEY AMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITD GDSDILRQGA+
Sbjct: 8 KKAIESMNARLQLVMKSGKASLGYKSTIKSMRSTRAKMVLISNNCPPLRKSEIEYFAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDAGDSDILRQGAE 110
BLAST of mRNA_H-elongata_contig100875.79.1 vs. uniprot
Match: A0A835YXX2_9STRA (Ribosomal protein rpl30 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXX2_9STRA) HSP 1 Score: 170 bits (430), Expect = 6.250e-53 Identity = 81/99 (81.82%), Postives = 91/99 (91.92%), Query Frame = 1 Query: 1 KKVIESMNARLQLVMKSGKASLGYKSTIKSMRNTRAKMVLISNNCPPLRKSEIEYLAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDPGDSDILR 297
KK IES+N RLQLVM+SGKASLGYK T+K MR ++AKM++ISNNCPPLRKSEIEY A+LAKC VHHY+GSNTDLGTACGKYFRVSVL+ITD GDSDILR
Sbjct: 8 KKTIESINTRLQLVMRSGKASLGYKQTLKCMRTSKAKMIIISNNCPPLRKSEIEYYALLAKCNVHHYSGSNTDLGTACGKYFRVSVLAITDAGDSDILR 106
BLAST of mRNA_H-elongata_contig100875.79.1 vs. uniprot
Match: A0A812PA55_SYMMI (RPL30 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812PA55_SYMMI) HSP 1 Score: 167 bits (423), Expect = 7.530e-52 Identity = 77/99 (77.78%), Postives = 94/99 (94.95%), Query Frame = 1 Query: 1 KKVIESMNARLQLVMKSGKASLGYKSTIKSMRNTRAKMVLISNNCPPLRKSEIEYLAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDPGDSDILR 297
KK +ES+N+RLQLVM+SGKASLGYK+TIK++RNT+AK+V+IS+NCPPLRKSEIEY AMLAKC VHHY G+N+DLGTACGK++RVS+LS+TD GDSDILR
Sbjct: 10 KKTVESINSRLQLVMRSGKASLGYKTTIKTLRNTKAKLVIISSNCPPLRKSEIEYYAMLAKCTVHHYAGTNSDLGTACGKFYRVSMLSVTDGGDSDILR 108
BLAST of mRNA_H-elongata_contig100875.79.1 vs. uniprot
Match: L8GX53_ACACA (60S ribosomal protein, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GX53_ACACA) HSP 1 Score: 160 bits (404), Expect = 5.930e-49 Identity = 77/100 (77.00%), Postives = 88/100 (88.00%), Query Frame = 1 Query: 1 KKVIESMNARLQLVMKSGKASLGYKSTIKSMRNTRAKMVLISNNCPPLRKSEIEYLAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDPGDSDILRQ 300
KK ES+N+RL LVMKSGK +LGYKST+KS+R +AK+++IS NCPPLRKSEIEY AMLAK VHHYTG+N DLGTACGKYFRVS LSITDPGDSDI+RQ
Sbjct: 8 KKAQESINSRLALVMKSGKYTLGYKSTLKSLRQGKAKLIIISTNCPPLRKSEIEYYAMLAKTGVHHYTGNNIDLGTACGKYFRVSSLSITDPGDSDIIRQ 107
BLAST of mRNA_H-elongata_contig100875.79.1 vs. uniprot
Match: A0A7S2USR9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USR9_9STRA) HSP 1 Score: 159 bits (401), Expect = 5.570e-48 Identity = 74/99 (74.75%), Postives = 89/99 (89.90%), Query Frame = 1 Query: 1 KKVIESMNARLQLVMKSGKASLGYKSTIKSMRNTRAKMVLISNNCPPLRKSEIEYLAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDPGDSDILR 297
KK +E+MN++LQLVMKSGKASLGYKS+IK++RN +AK+VL+S NCPPLR+SEIEY AMLAK VHHY G+NTDLGTACGKYFRV VL +T+ GDS+ILR
Sbjct: 47 KKTVENMNSQLQLVMKSGKASLGYKSSIKALRNNKAKLVLVSKNCPPLRRSEIEYYAMLAKVGVHHYAGNNTDLGTACGKYFRVGVLCVTNAGDSEILR 145
BLAST of mRNA_H-elongata_contig100875.79.1 vs. uniprot
Match: A0A482SS92_9ARCH (50S ribosomal protein L30e n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SS92_9ARCH) HSP 1 Score: 157 bits (398), Expect = 5.870e-48 Identity = 71/99 (71.72%), Postives = 92/99 (92.93%), Query Frame = 1 Query: 1 KKVIESMNARLQLVMKSGKASLGYKSTIKSMRNTRAKMVLISNNCPPLRKSEIEYLAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDPGDSDILR 297
KK +ES+N ++QLVMKSGK +LGYK+T+K++R+ +AKMV+ISNN P LRKSE+EY AMLAKC++HHY+G+N+DLGTACGK+FRVS++SITDPGDSDILR
Sbjct: 17 KKNVESINGKIQLVMKSGKTALGYKTTLKALRSNKAKMVVISNNTPTLRKSEVEYYAMLAKCSIHHYSGNNSDLGTACGKFFRVSMMSITDPGDSDILR 115
BLAST of mRNA_H-elongata_contig100875.79.1 vs. uniprot
Match: A0A0G4J7S9_PLABS (Ribosomal_L7Ae domain-containing protein n=2 Tax=Plasmodiophoridae TaxID=37358 RepID=A0A0G4J7S9_PLABS) HSP 1 Score: 155 bits (392), Expect = 4.120e-47 Identity = 74/99 (74.75%), Postives = 89/99 (89.90%), Query Frame = 1 Query: 1 KKVIESMNARLQLVMKSGKASLGYKSTIKSMRNTRAKMVLISNNCPPLRKSEIEYLAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDPGDSDILR 297
KK IES+N+RLQLV+KSGK SLGYKST+KS+R +AK+V+I+NNCP LRKSEIEY AMLAK VHHY+G+N +LGT+CGKYFRVS L+ITDPGDSDI+R
Sbjct: 11 KKAIESINSRLQLVVKSGKYSLGYKSTLKSLRMGKAKLVIIANNCPALRKSEIEYYAMLAKTGVHHYSGNNIELGTSCGKYFRVSCLTITDPGDSDIIR 109
BLAST of mRNA_H-elongata_contig100875.79.1 vs. uniprot
Match: A0A7S3HF33_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HF33_9STRA) HSP 1 Score: 155 bits (391), Expect = 6.040e-47 Identity = 71/100 (71.00%), Postives = 91/100 (91.00%), Query Frame = 1 Query: 1 KKVIESMNARLQLVMKSGKASLGYKSTIKSMRNTRAKMVLISNNCPPLRKSEIEYLAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDPGDSDILRQ 300
KK +ES+N+++QLVMKSGK +LGYK+TIK++R +AKMVLI++N PPLRKSE+EY AMLAKC VHHY G+N++LGTACGK++RVS++SITD GDSDILRQ
Sbjct: 13 KKAVESINSKVQLVMKSGKTALGYKTTIKALRANKAKMVLIASNTPPLRKSEVEYYAMLAKCVVHHYAGNNSELGTACGKFYRVSMVSITDAGDSDILRQ 112
BLAST of mRNA_H-elongata_contig100875.79.1 vs. uniprot
Match: A0A6S7GSE1_PARCT (60S ribosomal protein L30 n=4 Tax=Alcyonacea TaxID=40677 RepID=A0A6S7GSE1_PARCT) HSP 1 Score: 155 bits (391), Expect = 6.630e-47 Identity = 76/99 (76.77%), Postives = 88/99 (88.89%), Query Frame = 1 Query: 1 KKVIESMNARLQLVMKSGKASLGYKSTIKSMRNTRAKMVLISNNCPPLRKSEIEYLAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDPGDSDILR 297
KK ES+N+RLQLVMKSGK +LGYKST+K++R +AK+V+ISNN P LRKSEIEY AMLAK VHHYTG+N +LGTACGKYFRVSVLSITDPGDSDI+R
Sbjct: 8 KKSQESINSRLQLVMKSGKYTLGYKSTLKTLRQGKAKLVIISNNTPQLRKSEIEYYAMLAKTGVHHYTGNNIELGTACGKYFRVSVLSITDPGDSDIIR 106
BLAST of mRNA_H-elongata_contig100875.79.1 vs. uniprot
Match: A0A7S1A6B9_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1A6B9_NOCSC) HSP 1 Score: 154 bits (389), Expect = 1.180e-46 Identity = 72/95 (75.79%), Postives = 87/95 (91.58%), Query Frame = 1 Query: 13 ESMNARLQLVMKSGKASLGYKSTIKSMRNTRAKMVLISNNCPPLRKSEIEYLAMLAKCAVHHYTGSNTDLGTACGKYFRVSVLSITDPGDSDILR 297
E++N RL+LVMKSGK +LG+KST+K++RN +AK+VLI++NCPPLRKSEIEY AML+K VHHYTG N +LGTACGKYFRVSVLSITDPGDSDI+R
Sbjct: 13 ENINTRLKLVMKSGKYNLGHKSTMKTLRNGKAKLVLIASNCPPLRKSEIEYYAMLSKTGVHHYTGENNELGTACGKYFRVSVLSITDPGDSDIIR 107 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100875.79.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100875.79.1 >prot_H-elongata_contig100875.79.1 ID=prot_H-elongata_contig100875.79.1|Name=mRNA_H-elongata_contig100875.79.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp MNARLQLVMKSGKASLGYKSTIKSMRNTRAKMVLISNNCPPLRKSEIEYLback to top mRNA from alignment at H-elongata_contig100875:1278..1589+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig100875.79.1 ID=mRNA_H-elongata_contig100875.79.1|Name=mRNA_H-elongata_contig100875.79.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=312bp|location=Sequence derived from alignment at H-elongata_contig100875:1278..1589+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig100875:1278..1589+ >mRNA_H-elongata_contig100875.79.1 ID=mRNA_H-elongata_contig100875.79.1|Name=mRNA_H-elongata_contig100875.79.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig100875:1278..1589+ (Himanthalia elongata Himel1 dioecious)back to top |