prot_H-elongata_contig100165.18.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig100165.18.1
Unique Nameprot_H-elongata_contig100165.18.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length292
Homology
BLAST of mRNA_H-elongata_contig100165.18.1 vs. uniprot
Match: A0A6H5JAQ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAQ4_9PHAE)

HSP 1 Score: 249 bits (635), Expect = 6.830e-78
Identity = 143/276 (51.81%), Postives = 174/276 (63.04%), Query Frame = 0
Query:    9 GHAVTPGKIYTCELTSSLTGCMSCLGTVKNITNTCTTCCTVEGDSECRTLESDWEFYASTIFFVFLCCCFSVLCGLTEVRRKKKGISFAQAWSVPQAMPILRTWPGRSVSASDIMSVGGGAEGDDHHQHWQPLSD-EEDLKHYPVAGLIDDSGVAFGFVAAMPQSLLGTGTNSSGRPGPATMHLPPTPQEPELTVWISRERNSTMNRRAARPHSIASTALIEGTHEGGGNVGSSEGRVCRVDAELEGGRTS---VVDSGLEEPLVVSG--TGPGRG 278
            GH  +PGK+YTC   S ++ CMSCL        +C TCC++E + +C  ++S+W+FYAST+FF+ LCCCF+ LCGLTEVRRKKKGISFAQAWSVPQAMPILRTWP RS S+SD MS  GG  G      W  LSD EEDLK YPVAGL+DDSG+AFGFV  +PQ+LL +   S  + G  +   PP+PQEPELTVWISR+ N   +  A     I   +          N      R         GGR     VV + LEEPL++ G  TGPGRG
Sbjct:   43 GHLASPGKLYTCIDVSEVSSCMSCLRNADYSDVSCDTCCSIE-NLDCTKVDSEWDFYASTLFFICLCCCFTALCGLTEVRRKKKGISFAQAWSVPQAMPILRTWPRRSASSSD-MSQAGGEVG----TQWAALSDDEEDLKRYPVAGLVDDSGMAFGFVTTLPQTLLSSVATSLRQAGSPS---PPSPQEPELTVWISRD-NEGASASAPAHRGIGGGSGASAVTGVEANSSEESSRGSSGATRAAGGRQQRAVVVGNDLEEPLMLDGVGTGPGRG 308          
BLAST of mRNA_H-elongata_contig100165.18.1 vs. uniprot
Match: D7FJE0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJE0_ECTSI)

HSP 1 Score: 59.7 bits (143), Expect = 1.200e-6
Identity = 69/223 (30.94%), Postives = 94/223 (42.15%), Query Frame = 0
Query:   29 CMSCLGTVKNITNTCTTCCTVEGDSECRTLESDWEFYASTIFF--VFLCCCFSVLCGLTEVRRKKKGISFAQAWSVPQAMPILRT---------------WP-----GRSVSASDIMSVGGGAEGDDHHQHWQPLSDEEDLKHYPVAGLIDDSGV-AFGFVAAMPQ---------SLLGTGTNSSGRPGPATMHLPPTPQEPELTVW-ISRERNSTMNRRAAR 218
            C+SC+ +  + T  C  CC    ++EC  LE  W    +T+    VF  C  S +  L E RRK+KGIS A+AWS+PQ MP+LR                W      G  V   D++   G  E   +   +  L  + D    PVA L +D+ V A  F    P          S   T  ++S R G       P  QE E   W +SR R++    R AR
Sbjct:   11 CVSCIPSRSSSTK-CAYCCGTP-NAECD-LEWSWGAVLATLSVSAVFATC--SGILALAEKRRKRKGISLARAWSIPQGMPVLRATVTDLSDAVRGRASIWSAEGLNGADVGDDDLLEHVGLLEEIPNDSIYGALVQQRD-SDIPVAKLAEDNWVTAMAFAGGQPNPDSDPVTYGSTSTTTASTSRREGAG-----PEGQEEEEHTWSVSRWRSARATARQAR 222          
BLAST of mRNA_H-elongata_contig100165.18.1 vs. uniprot
Match: A0A6H5L5L4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L4_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 2.390e-5
Identity = 40/100 (40.00%), Postives = 54/100 (54.00%), Query Frame = 0
Query:   15 GKIYTCELTSS--LTGCMSCLGTVKNITNTCTTCCTVEGDSECRTLESDWEFYASTIFF--VFLCCCFSVLCGLTEVRRKKKGISFAQAWSVPQAMPILR 110
            G+ Y C    S     C+SC+ +  + T  C  CC    ++EC  LE  W    +T+    VF  C  S +  L E RRK+KGIS A+AWS+PQ MP+LR
Sbjct:   86 GERYYCMHVESPQTRACVSCIPSRSSSTK-CAYCCGTP-NAECD-LEWSWGAVLATLSVSAVFATC--SGILALAEKRRKRKGISLARAWSIPQGMPVLR 180          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100165.18.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JAQ4_9PHAE6.830e-7851.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FJE0_ECTSI1.200e-630.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5L4_9PHAE2.390e-540.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..63
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 85..292
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 64..84
NoneNo IPR availableTMHMMTMhelixcoord: 62..84

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100165contigH-elongata_contig100165:1202..2375 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100165.18.1mRNA_H-elongata_contig100165.18.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig100165 1202..2375 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig100165.18.1 ID=prot_H-elongata_contig100165.18.1|Name=mRNA_H-elongata_contig100165.18.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=292bp
MVQFVSRAGHAVTPGKIYTCELTSSLTGCMSCLGTVKNITNTCTTCCTVE
GDSECRTLESDWEFYASTIFFVFLCCCFSVLCGLTEVRRKKKGISFAQAW
SVPQAMPILRTWPGRSVSASDIMSVGGGAEGDDHHQHWQPLSDEEDLKHY
PVAGLIDDSGVAFGFVAAMPQSLLGTGTNSSGRPGPATMHLPPTPQEPEL
TVWISRERNSTMNRRAARPHSIASTALIEGTHEGGGNVGSSEGRVCRVDA
ELEGGRTSVVDSGLEEPLVVSGTGPGRGVEGESGAGRNTSRG
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