mRNA_H-elongata_contig100165.18.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-elongata_contig100165.18.1 vs. uniprot
Match: A0A6H5JAQ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAQ4_9PHAE) HSP 1 Score: 249 bits (635), Expect = 6.830e-78 Identity = 143/276 (51.81%), Postives = 174/276 (63.04%), Query Frame = 1 Query: 25 GHAVTPGKIYTCELTSSLTGCMSCLGTVKNITNTCTTCCTVEGDSECRTLESDWEFYASTIFFVFLCCCFSVLCGLTEVRRKKKGISFAQAWSVPQAMPILRTWPGRSVSASDIMSVGGGAEGDDHHQHWQPLSD-EEDLKHYPVAGLIDDSGVAFGFVAAMPQSLLGTGTNSSGRPGPATMHLPPTPQEPELTVWISRERNSTMNRRAARPHSIASTALIEGTHEGGGNVGSSEGRVCRVDAELEGGRTS---VVDSGLEEPLVVSG--TGPGRG 834
GH +PGK+YTC S ++ CMSCL +C TCC++E + +C ++S+W+FYAST+FF+ LCCCF+ LCGLTEVRRKKKGISFAQAWSVPQAMPILRTWP RS S+SD MS GG G W LSD EEDLK YPVAGL+DDSG+AFGFV +PQ+LL + S + G + PP+PQEPELTVWISR+ N + A I + N R GGR VV + LEEPL++ G TGPGRG
Sbjct: 43 GHLASPGKLYTCIDVSEVSSCMSCLRNADYSDVSCDTCCSIE-NLDCTKVDSEWDFYASTLFFICLCCCFTALCGLTEVRRKKKGISFAQAWSVPQAMPILRTWPRRSASSSD-MSQAGGEVG----TQWAALSDDEEDLKRYPVAGLVDDSGMAFGFVTTLPQTLLSSVATSLRQAGSPS---PPSPQEPELTVWISRD-NEGASASAPAHRGIGGGSGASAVTGVEANSSEESSRGSSGATRAAGGRQQRAVVVGNDLEEPLMLDGVGTGPGRG 308
BLAST of mRNA_H-elongata_contig100165.18.1 vs. uniprot
Match: D7FJE0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJE0_ECTSI) HSP 1 Score: 59.7 bits (143), Expect = 1.200e-6 Identity = 69/223 (30.94%), Postives = 94/223 (42.15%), Query Frame = 1 Query: 85 CMSCLGTVKNITNTCTTCCTVEGDSECRTLESDWEFYASTIFF--VFLCCCFSVLCGLTEVRRKKKGISFAQAWSVPQAMPILRT---------------WP-----GRSVSASDIMSVGGGAEGDDHHQHWQPLSDEEDLKHYPVAGLIDDSGV-AFGFVAAMPQ---------SLLGTGTNSSGRPGPATMHLPPTPQEPELTVW-ISRERNSTMNRRAAR 654
C+SC+ + + T C CC ++EC LE W +T+ VF C S + L E RRK+KGIS A+AWS+PQ MP+LR W G V D++ G E + + L + D PVA L +D+ V A F P S T ++S R G P QE E W +SR R++ R AR
Sbjct: 11 CVSCIPSRSSSTK-CAYCCGTP-NAECD-LEWSWGAVLATLSVSAVFATC--SGILALAEKRRKRKGISLARAWSIPQGMPVLRATVTDLSDAVRGRASIWSAEGLNGADVGDDDLLEHVGLLEEIPNDSIYGALVQQRD-SDIPVAKLAEDNWVTAMAFAGGQPNPDSDPVTYGSTSTTTASTSRREGAG-----PEGQEEEEHTWSVSRWRSARATARQAR 222
BLAST of mRNA_H-elongata_contig100165.18.1 vs. uniprot
Match: A0A6H5L5L4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L4_9PHAE) HSP 1 Score: 56.2 bits (134), Expect = 2.390e-5 Identity = 40/100 (40.00%), Postives = 54/100 (54.00%), Query Frame = 1 Query: 43 GKIYTCELTSS--LTGCMSCLGTVKNITNTCTTCCTVEGDSECRTLESDWEFYASTIFF--VFLCCCFSVLCGLTEVRRKKKGISFAQAWSVPQAMPILR 330
G+ Y C S C+SC+ + + T C CC ++EC LE W +T+ VF C S + L E RRK+KGIS A+AWS+PQ MP+LR
Sbjct: 86 GERYYCMHVESPQTRACVSCIPSRSSSTK-CAYCCGTP-NAECD-LEWSWGAVLATLSVSAVFATC--SGILALAEKRRKRKGISLARAWSIPQGMPVLR 180 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100165.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100165.18.1 >prot_H-elongata_contig100165.18.1 ID=prot_H-elongata_contig100165.18.1|Name=mRNA_H-elongata_contig100165.18.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=292bp MVQFVSRAGHAVTPGKIYTCELTSSLTGCMSCLGTVKNITNTCTTCCTVEback to top mRNA from alignment at H-elongata_contig100165:1202..2375+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig100165.18.1 ID=mRNA_H-elongata_contig100165.18.1|Name=mRNA_H-elongata_contig100165.18.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1174bp|location=Sequence derived from alignment at H-elongata_contig100165:1202..2375+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig100165:1202..2375+ >mRNA_H-elongata_contig100165.18.1 ID=mRNA_H-elongata_contig100165.18.1|Name=mRNA_H-elongata_contig100165.18.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1752bp|location=Sequence derived from alignment at H-elongata_contig100165:1202..2375+ (Himanthalia elongata Himel1 dioecious)back to top |