prot_H-elongata_contig100023.7.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig100023.7.1
Unique Nameprot_H-elongata_contig100023.7.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length100
Homology
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BLAST of mRNA_H-elongata_contig100023.7.1 vs. uniprot
Match: D8LJX2_ECTSI (Farnesyltransferase, CAAX box, alpha n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJX2_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 3.100e-29
Identity = 61/88 (69.32%), Postives = 65/88 (73.86%), Query Frame = 0 
Query:   11 HTDKVAGNYLRAFQASGETSERALFITRLVLEDNPSHYTAWWFRRMYRDVSFFVTFESRCIFALGMDLENELDVAEDIVGYNPKNYQV 98
            H   VA +YLRAFQASGETSER+L ITRLVLE N SHYTAWWFRR             RC+FALGMDL NEL+VAEDI G NPKNYQV
Sbjct:   35 HNYTVATDYLRAFQASGETSERSLAITRLVLEYNASHYTAWWFRR-------------RCLFALGMDLANELEVAEDIAGDNPKNYQV 109
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BLAST of mRNA_H-elongata_contig100023.7.1 vs. uniprot
Match: A0A2I1C632_ASPN1 (CaaX farnesyltransferase alpha subunit Ram2 n=19 Tax=Aspergillus TaxID=5052 RepID=A0A2I1C632_ASPN1)

HSP 1 Score: 58.9 bits (141), Expect = 5.110e-8
Identity = 31/84 (36.90%), Postives = 47/84 (55.95%), Query Frame = 0 
Query:   16 AGNYLRAFQASGETSERALFITRLVLEDNPSHYTAWWFRRMYRDVSFFVTFESRCIFALGMDLENELDVAEDIVGYNPKNYQVW 99
            A +YLRA  A+ E SERAL +T  ++  NP+HYT W +R             ++ +FALG +L  E++    +   + KNYQ+W
Sbjct:   42 ATSYLRAVMAANEMSERALRLTGDIISMNPAHYTVWIYR-------------AKILFALGKNLNEEIEWLNKVALKHLKNYQIW 112
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BLAST of mRNA_H-elongata_contig100023.7.1 vs. uniprot
Match: A0A0C3PXD4_PISTI (Uncharacterized protein n=2 Tax=Pisolithus TaxID=37467 RepID=A0A0C3PXD4_PISTI)

HSP 1 Score: 53.1 bits (126), Expect = 5.510e-6
Identity = 29/86 (33.72%), Postives = 44/86 (51.16%), Query Frame = 0 
Query:   14 KVAGNYLRAFQASGETSERALFITRLVLEDNPSHYTAWWFRRMYRDVSFFVTFESRCIFALGMDLENELDVAEDIVGYNPKNYQVW 99
            K A +Y R    +GE S R L +T  ++  NP+HY+AW +R              + + ALG+ LE EL + +++     K YQVW
Sbjct:   42 KDATDYFRGIVKTGEKSLRVLDLTENIIRQNPAHYSAWQYRY-------------KTLMALGVPLEEELRLMDELAVKYLKTYQVW 114
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100023.7.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LJX2_ECTSI3.100e-2969.32Farnesyltransferase, CAAX box, alpha n=2 Tax=Ectoc... [more]
A0A2I1C632_ASPN15.110e-836.90CaaX farnesyltransferase alpha subunit Ram2 n=19 T... [more]
A0A0C3PXD4_PISTI5.510e-633.72Uncharacterized protein n=2 Tax=Pisolithus TaxID=3... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.25.40.120coord: 10..99
e-value: 1.0E-18
score: 69.5
NoneNo IPR availablePANTHERPTHR11129PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNITcoord: 12..99
NoneNo IPR availablePANTHERPTHR11129:SF1PROTEIN FARNESYLTRANSFERASE/GERANYLGERANYLTRANSFERASE TYPE-1 SUBUNIT ALPHAcoord: 12..99
NoneNo IPR availableSUPERFAMILY48439Protein prenylyltransferasecoord: 15..99
IPR002088Protein prenyltransferase, alpha subunitPROSITEPS51147PFTAcoord: 29..63
score: 9.036
IPR002088Protein prenyltransferase, alpha subunitPROSITEPS51147PFTAcoord: 77..99
score: 11.355

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig100023contigH-elongata_contig100023:1538..2285 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig100023.7.1mRNA_H-elongata_contig100023.7.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig100023 1538..2285 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig100023.7.1 ID=prot_H-elongata_contig100023.7.1|Name=mRNA_H-elongata_contig100023.7.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
MTNGNLLRGEHTDKVAGNYLRAFQASGETSERALFITRLVLEDNPSHYTA
WWFRRMYRDVSFFVTFESRCIFALGMDLENELDVAEDIVGYNPKNYQVW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002088Prenyl_trans_a