mRNA_H-elongata_contig100023.7.1 (mRNA) Himanthalia elongata Himel1 dioecious
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-elongata_contig100023.7.1 vs. uniprot
Match: D8LJX2_ECTSI (Farnesyltransferase, CAAX box, alpha n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJX2_ECTSI) HSP 1 Score: 116 bits (290), Expect = 3.100e-29 Identity = 61/88 (69.32%), Postives = 65/88 (73.86%), Query Frame = 1 Query: 31 HTDKVAGNYLRAFQASGETSERALFITRLVLEDNPSHYTAWWFRRMYRDVSFFVTFESRCIFALGMDLENELDVAEDIVGYNPKNYQV 294
H VA +YLRAFQASGETSER+L ITRLVLE N SHYTAWWFRR RC+FALGMDL NEL+VAEDI G NPKNYQV
Sbjct: 35 HNYTVATDYLRAFQASGETSERSLAITRLVLEYNASHYTAWWFRR-------------RCLFALGMDLANELEVAEDIAGDNPKNYQV 109
BLAST of mRNA_H-elongata_contig100023.7.1 vs. uniprot
Match: A0A2I1C632_ASPN1 (CaaX farnesyltransferase alpha subunit Ram2 n=19 Tax=Aspergillus TaxID=5052 RepID=A0A2I1C632_ASPN1) HSP 1 Score: 58.9 bits (141), Expect = 5.110e-8 Identity = 31/84 (36.90%), Postives = 47/84 (55.95%), Query Frame = 1 Query: 46 AGNYLRAFQASGETSERALFITRLVLEDNPSHYTAWWFRRMYRDVSFFVTFESRCIFALGMDLENELDVAEDIVGYNPKNYQVW 297
A +YLRA A+ E SERAL +T ++ NP+HYT W +R ++ +FALG +L E++ + + KNYQ+W
Sbjct: 42 ATSYLRAVMAANEMSERALRLTGDIISMNPAHYTVWIYR-------------AKILFALGKNLNEEIEWLNKVALKHLKNYQIW 112
BLAST of mRNA_H-elongata_contig100023.7.1 vs. uniprot
Match: A0A0C3PXD4_PISTI (Uncharacterized protein n=2 Tax=Pisolithus TaxID=37467 RepID=A0A0C3PXD4_PISTI) HSP 1 Score: 53.1 bits (126), Expect = 5.510e-6 Identity = 29/86 (33.72%), Postives = 44/86 (51.16%), Query Frame = 1 Query: 40 KVAGNYLRAFQASGETSERALFITRLVLEDNPSHYTAWWFRRMYRDVSFFVTFESRCIFALGMDLENELDVAEDIVGYNPKNYQVW 297
K A +Y R +GE S R L +T ++ NP+HY+AW +R + + ALG+ LE EL + +++ K YQVW
Sbjct: 42 KDATDYFRGIVKTGEKSLRVLDLTENIIRQNPAHYSAWQYRY-------------KTLMALGVPLEEELRLMDELAVKYLKTYQVW 114 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig100023.7.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig100023.7.1 >prot_H-elongata_contig100023.7.1 ID=prot_H-elongata_contig100023.7.1|Name=mRNA_H-elongata_contig100023.7.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp MTNGNLLRGEHTDKVAGNYLRAFQASGETSERALFITRLVLEDNPSHYTAback to top mRNA from alignment at H-elongata_contig100023:1538..2285+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig100023.7.1 ID=mRNA_H-elongata_contig100023.7.1|Name=mRNA_H-elongata_contig100023.7.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=748bp|location=Sequence derived from alignment at H-elongata_contig100023:1538..2285+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig100023:1538..2285+ >mRNA_H-elongata_contig100023.7.1 ID=mRNA_H-elongata_contig100023.7.1|Name=mRNA_H-elongata_contig100023.7.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig100023:1538..2285+ (Himanthalia elongata Himel1 dioecious)back to top |