mRNA_H-elongata_contig9938.17274.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig9938.17274.1 vs. uniprot
Match: A0A6H5KNV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV1_9PHAE) HSP 1 Score: 258 bits (659), Expect = 6.300e-79 Identity = 157/363 (43.25%), Postives = 205/363 (56.47%), Query Frame = 1
Query: 1 TFWLPADSKATTSLEKVARSIFDFHAKTLC-----EQARVKG--GSLNVSTLQVGNNDSRTLAPHIDHKRSGHSSGCGGDVETRSDCFGAESGVEWWVQIRKEDYHADLGMPFHWDKDERLLELKGKLVCPAVSTVTYLTDFGAPTVVLKSRATDKGTVVAGDMEEAFVSYPALFKHLAFDGNFLHGVPD-VMRRDNSHADNSCKRLS-ERHSRSSEPRDDPVTASGLAARGSTQGCQKQMRVTFLANVWLSHKPSGAVPLPPSIAKYLNRAVDVWNLSFLQPVEFYPVSVEASNVVNTGRNIVSETAR---ESTVTFEASLGPISYLEVHAPSSKRLSTGDCKARHTFVLRFGKGKYARIST 1053
TFWLPAD+ TSLE++A++I+DFH + + + G GS + GN SR + S H+ G ESG EWWVQ R+E HA +GMPFHWDKDE +LE +G +VCP+VSTVTYLT +GAPTVVL++RAT GTV GD+ + FVSYPALFKHLAFDG FLHGVP+ +MR + R R +R + + L + T+ Q +MRVTFL NVWLSHKP G LP +A L+ + V L F +P +F PV VE + + R S++ LGP LEV AP+ +RLSTG K +F L + +G ++RIST
Sbjct: 32 TFWLPADACPATSLERIAKAIYDFHVANKQHTHGHQDSALTGPVGSTPSAVAHSGNIPSRDKPGVVRRDASSHTGG-------------VESGAEWWVQQREEGRHASVGMPFHWDKDEEMLEQEGLVVCPSVSTVTYLTGYGAPTVVLEARATGSGTVQEGDINQTFVSYPALFKHLAFDGGFLHGVPEQLMRTGDQRVSGKVGRDGGRREARGGNDNHGIRSRTSLPSSNGTRRRQGRMRVTFLVNVWLSHKPKGITSLPADVAGSLSN-ISV-PLCFDRPGDFVPVPVEKEQETQPSQEEDGGSIRGTKPSSMLLNVPLGPTLLLEVRAPTPERLSTGGFKENDSFALVYAEGSHSRIST 379
BLAST of mRNA_H-elongata_contig9938.17274.1 vs. uniprot
Match: D7G6Z0_ECTSI (Putative LuxR domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Z0_ECTSI) HSP 1 Score: 190 bits (483), Expect = 1.900e-54 Identity = 99/190 (52.11%), Postives = 124/190 (65.26%), Query Frame = 1
Query: 1 TFWLPADSKATTSLEKVARSIFDFHAKT---LCEQARVKGGSLNVSTLQVGNNDSRTLAPHIDHKRSGHSSGCGGDVETRSDCFGAESGVEWWVQIRKEDYHADLGMPFHWDKDERLLELKGKLVCPAVSTVTYLTDFGAPTVVLKSRATDKGTVVAGDMEEAFVSYPALFKHLAFDGNFLHGVPDVMRR 561
TFWLPAD+ TSLEK+A++IFDFH + +Q G + + V + ++ R D +R+ C ESG EWWVQ R+E HA LGMPFHWDKDE++LE +G +VCPAVSTVTYLT +GAPTVVL++RAT TV GD+ + FVSYPALFKHLAFDG FLHGVP+ + R
Sbjct: 32 TFWLPADACPATSLEKIAKAIFDFHVANKQHIGQQDSAPTGPVGSTPSAVAHGENIPCRDKPGVVRR--------DTSSRTGCV--ESGAEWWVQQREEGRHASLGMPFHWDKDEQMLEQEGLVVCPAVSTVTYLTGYGAPTVVLEARATGSRTVEEGDINQTFVSYPALFKHLAFDGGFLHGVPEQLMR 211
BLAST of mRNA_H-elongata_contig9938.17274.1 vs. uniprot
Match: A0A7R9TJB1_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9TJB1_MICPS) HSP 1 Score: 114 bits (286), Expect = 4.320e-25 Identity = 86/260 (33.08%), Postives = 108/260 (41.54%), Query Frame = 1
Query: 4 FWLPADSKATTSLEKVARSIFDFHAKTLCEQARVKGGSLNVSTLQVGNNDSRTLAPHIDHKRSGHSSGCGGDVETRSDCFGAESGVEWWVQIRKEDYHADLGMPFHWDKDERLLELKGKLVCPAVSTVTYLTDFGAPTVVLKSRA------TD--KGTVVAGDMEEAFVSYPALFKHLAFDGNFLHGVPDVMRRDNSHADNSCKRLSERHSRSSEPRDDPVTASGLAARGSTQGCQKQMRVTFLANVWLSHKPSGAVPLP 759
FWL AD+ +LE +AR++FD H +A Q N D GD FG G EWW Q+R+ D + FHWDKDE L++ G +V P +STVTYLT GAPTVVL+ A TD +G++ G FVSYP KH++FDG FLHG + R T + RVTFL NVWL +KP G P
Sbjct: 68 FWLAADAAPRCALESLARAVFDRHVPADVLRA-----------FQQTNADEARF----------------GDGR-----FGGGCGAEWWTQVRRVDDECREAVAFHWDKDEDLVDDFGVVVHPLISTVTYLTSSGAPTVVLEKTAPTSYAETDGFRGSIAGG-----FVSYPLAGKHVSFDGRFLHGASRELAR------------------------------------PTDVEEGYERVTFLVNVWLGYKPRGIDAFP 254
BLAST of mRNA_H-elongata_contig9938.17274.1 vs. uniprot
Match: A0A7S4QU38_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QU38_9STRA) HSP 1 Score: 114 bits (284), Expect = 1.550e-24 Identity = 90/269 (33.46%), Postives = 111/269 (41.26%), Query Frame = 1
Query: 1 TFWLPADSKATTSLEKVARSIFDFHAKTLCEQARVKGGSLNVSTLQVGNNDSRTLAPHIDHKRSGHSSGCGGDVETRSDCFGAESGVEWWVQIR---------KEDYHADLGMPFHWDKDERLLELKGKLVCPAVSTVTYLTDFGAPTVVLKS-----RATDK--GTVVAGDMEEAFVSYPALFKHLAFDGNFLHGVPDVMRRDNSHADNSCKRLSERHSRSSEPRDDPVTASGLAARGSTQGCQKQMRVTFLANVWLSHKPSGAVPLP 759
TFWL A + LEK+A+ IF HA V + R H+ GD+E + C G EWWVQ+R A G+ FHWDKDE L ++ V P +STVTYLTD GAPT+V + R DK GT + G AFVS+P KHL+FDG LHG P + R SSE ++RVTFL N+WL HKP G P
Sbjct: 66 TFWLSARDEPRCLLEKLAKDIFAHHA---------------VVVMNNNKGSKRAKNHHL------------GDMEFSNAC-----GCEWWVQLRPSPNQKRINSNSKEAQRGIQFHWDKDETLRDVADVFVHPHLSTVTYLTDNGAPTLVFEESMPNERLLDKTAGTGIKG----AFVSWPLRGKHLSFDGRLLHGAPSDLLR------------------SSET--------------------DELRVTFLVNIWLYHKPLGIEKFP 260
BLAST of mRNA_H-elongata_contig9938.17274.1 vs. uniprot
Match: A0A813AZR0_9DINO (KCNB2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813AZR0_9DINO) HSP 1 Score: 115 bits (288), Expect = 3.410e-24 Identity = 74/201 (36.82%), Postives = 99/201 (49.25%), Query Frame = 1
Query: 196 HSSGCGGDVETRSDCFGAESGVEWWVQIRKEDYHADLGMPFHWDKDERLLELKGKLVCPAVSTVTYLTDFGAPTVVLKSRATDKGTVVA--GDMEEAFVSYPALFKHLAFDGNFLHG-VPDVMRRDNSHADNSCKRLSERHSRSSEPRDDPVTASGLAARGSTQGCQKQMRVTFLANVWLSHKPSGAVPLPPSIAKYLNRA 789
H++GC D A SG EWW Q+R+ +H + G+ FHWD DE +E V P +STVTYL+D GAPT+VL R + + ++ + G + E +S+P L+KHL FDG FLHG VP V K +RVTFL NVWL+H+PS LP S++K L A
Sbjct: 166 HTAGCRFDP--------ARSGAEWWAQVRQSGHHEE-GIHFHWDTDEVAVERHDVNVHPHLSTVTYLSDSGAPTLVLACRNSRRPSLTSAYGPIYEGALSWPKLWKHLVFDGQFLHGTVPSVEY------------------------------------------SKGLRVTFLVNVWLNHRPSNCHRLPKSLSKRLGDA 315
BLAST of mRNA_H-elongata_contig9938.17274.1 vs. uniprot
Match: A0A1Q9EDB1_SYMMI (Uncharacterized protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9EDB1_SYMMI) HSP 1 Score: 115 bits (288), Expect = 6.800e-24 Identity = 74/201 (36.82%), Postives = 99/201 (49.25%), Query Frame = 1
Query: 196 HSSGCGGDVETRSDCFGAESGVEWWVQIRKEDYHADLGMPFHWDKDERLLELKGKLVCPAVSTVTYLTDFGAPTVVLKSRATDKGTVVA--GDMEEAFVSYPALFKHLAFDGNFLHG-VPDVMRRDNSHADNSCKRLSERHSRSSEPRDDPVTASGLAARGSTQGCQKQMRVTFLANVWLSHKPSGAVPLPPSIAKYLNRA 789
H++GC D A SG EWW Q+R+ +H + G+ FHWD DE +E V P +STVTYL+D GAPT+VL R + + ++ + G + E +S+P L+KHL FDG FLHG VP V K +RVTFL NVWL+H+PS LP S++K L A
Sbjct: 1396 HTAGCRFDP--------ARSGAEWWAQVRQSGHHEE-GIHFHWDTDEVAVERHDVNVHPHLSTVTYLSDSGAPTLVLACRNSRRPSLTSAYGPIYEGALSWPKLWKHLVFDGQFLHGTVPSVEY------------------------------------------SKGLRVTFLVNVWLNHRPSNCHRLPKSLSKRLGDA 1545
BLAST of mRNA_H-elongata_contig9938.17274.1 vs. uniprot
Match: B7FQJ1_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FQJ1_PHATC) HSP 1 Score: 110 bits (275), Expect = 4.030e-23 Identity = 87/262 (33.21%), Postives = 121/262 (46.18%), Query Frame = 1
Query: 196 HSSGCGGDVETRSDCFGAESGVEWWVQIR---------------------KEDYHADLGMPFHWDKDERL-LELKGKL-VCPAVSTVTYLTDFGAPTVVLKSRATD-------KGTVVAGD--MEEAFVSYPALFKHLAFDGNFLHGVPDVMRRDNSHADNSCKRLSERHSRSSEPRDDPVTASGLAARGSTQGCQKQMRVTFLANVWLSHKPSGAVPLPPS-IAKYLNRAVDVWNLSFLQP--VEFYPVSVEASNVVNTGR 876
H+SGC D T SG EWWVQIR ++ ++ G+ FHWDKDE L L G + P +STVTYLT GAPT+ + R + G V+ + E F+S+P KHL+FDG FLH P + D + E + + VT GL A + ++ RVTFL N+WL+++P P P S I K V+V +LSF + ++ + V A NV +T R
Sbjct: 100 HTSGCAYDPGT--------SGAEWWVQIRPSPEAGRYSMHDKPHKRIGDGEQKDMSETGISFHWDKDEDLRLHCGGTTYIHPHLSTVTYLTSIGAPTLAVNCRVNNFTGEWIVPGNNVSSEHVQMEGFLSWPKAGKHLSFDGRFLHAAPPDLMEDGAF----------------EKQINYVTKEGLDALEVNRVRRRHRRVTFLVNIWLNYRPFDVQPFPESMINKMSGSVVEVGSLSFKKEGVIDAAILEVPAENVKDTDR 337
BLAST of mRNA_H-elongata_contig9938.17274.1 vs. uniprot
Match: A0A812QHB8_9DINO (Hypothetical protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812QHB8_9DINO) HSP 1 Score: 111 bits (278), Expect = 1.140e-22 Identity = 72/201 (35.82%), Postives = 100/201 (49.75%), Query Frame = 1
Query: 196 HSSGCGGDVETRSDCFGAESGVEWWVQIRKEDYHADLGMPFHWDKDERLLELKGKLVCPAVSTVTYLTDFGAPTVVLKSRATDKGTVVA--GDMEEAFVSYPALFKHLAFDGNFLHG-VPDVMRRDNSHADNSCKRLSERHSRSSEPRDDPVTASGLAARGSTQGCQKQMRVTFLANVWLSHKPSGAVPLPPSIAKYLNRA 789
H++GC D A SG EWW Q+R+ +H + G+ FHWD DE +E V P +STVTYL++ GAPT+VL R + + ++ + G + E +S+P L+KHL FDG FLHG VP + +D P RVTFL N+WL+H+PS LP S++K L A
Sbjct: 794 HTAGCRFDP--------ARSGAEWWAQVRQSGHHEE-GIQFHWDTDEVAVERHDVNVHPHLSTVTYLSESGAPTLVLACRNSRRPSLTSAYGPIHEGALSWPKLWKHLVFDGQFLHGTVPSL----------------------EYGKDGP-------------------RVTFLVNIWLNHRPSNCHRLPKSLSKRLGDA 944
BLAST of mRNA_H-elongata_contig9938.17274.1 vs. uniprot
Match: L1JH63_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JH63_GUITC) HSP 1 Score: 108 bits (270), Expect = 1.370e-22 Identity = 83/287 (28.92%), Postives = 115/287 (40.07%), Query Frame = 1
Query: 4 FWLPADSKATTSLEKVARSIFDFHAKTLCEQARVKGGSLNVSTLQVGNNDSRTLAPHIDHKRSGHSSGCGGDVETRSDCFGAESGVEWWVQIRKEDYHADLGMPFHWDKDERLLELKGKLVCPAVSTVTYLTDFGAPTVVLKSRATDKGTVVAGDMEEAFVSYPALFKHLAFDGNFLHGVPDVMRRDNSHADNSCKRLSERHSRSSEPRDDPVTASGLAARGSTQGCQKQMRVTFLANVWLSHKPSGAVPLPPSIAKYLNRAVDVWNLSFLQPVEFYPVSVEASNVV 864
FWL A++K +LE +A+ IF+FH A VKG ETRS G EWWVQ R + FHWD+DE + + V P + TVTYL++ GAPT+VL KG + D+ +S+P L KH+ FDG FLHGVP + R ++D T R+TFL N+W+SH P+ P P K ++ +F PV F + + + V
Sbjct: 130 FWLAANAKPRFTLEALAKQIFEFHT------ADVKGYD-----------------------------------ETRS-------GAEWWVQFRGTKSAHGKSIGFHWDRDEFYADRTDQNVHPQIGTVTYLSEHGAPTLVLDQSPIPKGE--SRDIHSGALSHPKLGKHICFDGRFLHGVPAELSR--------------------HLKEDQFT-----------------RITFLVNIWISHIPTDTAPWPEEDVKSMS--------TFSLPVSFSQILLRSPTAV 321
BLAST of mRNA_H-elongata_contig9938.17274.1 vs. uniprot
Match: A0A7S4BXK0_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BXK0_CHRCT) HSP 1 Score: 107 bits (266), Expect = 2.280e-21 Identity = 91/286 (31.82%), Postives = 128/286 (44.76%), Query Frame = 1
Query: 253 SGVEWWVQIRKEDYHADLGMPFHWDKDERLLELKGKLVCPAVSTVTYLTDFGAPTVVLKSRATDKGTVV-AGDMEEAFVSYPALFKHLAFDGNFLHGVPDVMRRDNSHADNS-CKRLSERHSRSSEPRDDPVTASGLAARGSTQGCQ--KQMRVTFLANVWLSHKPSGAVPLPPSIAKYLNRAVDVWNLSFLQPVEFYP----------------------VSVEASNVVNTGRNIVSET---ARESTVTFEASLGPISYLEVHAPSSKRLSTGDCKARHTFVLRF 1023
SG EWW Q+ D D+G FHWD+D + +G LV P + TVTYL+D GAPTVV+ R+ + G+ A +P +HL+FDG LHG P + R++ + C+R + S + G + RVTFL N+W +HKP GA LPP IA+ L+ VD+ F P Y V+ A VNT + +++ A +S V+ A+ S+L P+ RL C A T LRF
Sbjct: 227 SGAEWWTQVI--DAQDDIG--FHWDRDYDMQADQGILVHPQLGTVTYLSDVGAPTVVVGHRSQLMASAHNEGEAAGADCCWPRAGRHLSFDGQLLHGAPSELARESIAPPRAECERADQTSSTGKQKXXXXXXXXXXXXXXXGSGAKGPHSRRVTFLVNIWCNHKPWGAEKLPPKIAQKLSN-VDLG--CFAAPPSKYASSDPRAPHSADETEKAGPSAVKVAAAAKLSVNTAVHAAADSTDAAADSVVSAAATTNGNSHLTKVVPTKVRL----CTAAATRTLRF 501 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9938.17274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig9938.17274.1 >prot_H-elongata_contig9938.17274.1 ID=prot_H-elongata_contig9938.17274.1|Name=mRNA_H-elongata_contig9938.17274.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=369bp TFWLPADSKATTSLEKVARSIFDFHAKTLCEQARVKGGSLNVSTLQVGNNback to top mRNA from alignment at H-elongata_contig9938:7422..9347- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig9938.17274.1 ID=mRNA_H-elongata_contig9938.17274.1|Name=mRNA_H-elongata_contig9938.17274.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1926bp|location=Sequence derived from alignment at H-elongata_contig9938:7422..9347- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig9938:7422..9347- >mRNA_H-elongata_contig9938.17274.1 ID=mRNA_H-elongata_contig9938.17274.1|Name=mRNA_H-elongata_contig9938.17274.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2214bp|location=Sequence derived from alignment at H-elongata_contig9938:7422..9347- (Himanthalia elongata Himel1 dioecious)back to top |