mRNA_H-elongata_contig98840.17225.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig98840.17225.1
Unique NamemRNA_H-elongata_contig98840.17225.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig98840.17225.1 vs. uniprot
Match: A0A6H5KJM3_9PHAE (Anaphase-promoting complex subunit 2 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJM3_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 1.350e-38
Identity = 76/98 (77.55%), Postives = 83/98 (84.69%), Query Frame = 1 
Query:   16 QDVLLETVANPVRRYLRARKDTVRCIVASLTDETSGDLYEELRRQ-ASPEMQHWFTDDDDDGPVAPNWEPASRDADPASGNRSGSDILTMLVSIYGSK 306
            +DVLLETVA PVR YL+ RKDTVRCIVASLTDETSGDLYEELRRQ A P  +   +D+DD GPVAPNWEPASRDADP  G+R G DIL+MLVSIYGSK
Sbjct:   55 KDVLLETVAGPVRLYLQGRKDTVRCIVASLTDETSGDLYEELRRQDARPLDRDDASDEDDGGPVAPNWEPASRDADPTKGSRGGGDILSMLVSIYGSK 152
[Close]
BLAST of mRNA_H-elongata_contig98840.17225.1 vs. uniprot
Match: A0A3M6VMT7_9STRA (Anaphase-promoting complex subunit 2 n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VMT7_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.860e-21
Identity = 54/97 (55.67%), Postives = 69/97 (71.13%), Query Frame = 1 
Query:   22 VLLETVANPVRRYLRARKDTVRCIVASLTDETSGDLYEELRRQASPEMQHWFTDDDDDGPVAPNWEPASRDADP--ASGNRSGSDILTMLVSIYGSK 306
            VLLE ++ PV+ YLR RKDTVRCIV SLTDE +GDL+EELRR     +Q+    DDD+     +WEPA  +ADP  +S +RS  DIL +LV+IYGS+
Sbjct:  356 VLLEALSGPVKEYLRKRKDTVRCIVQSLTDEHNGDLFEELRRDNMRVIQYGDDSDDDEDISPDSWEPAPIEADPTKSSQSRSSDDILRILVNIYGSR 452
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BLAST of mRNA_H-elongata_contig98840.17225.1 vs. uniprot
Match: A0A0P1AJ53_PLAHL (Anaphase-promoting complex subunit 2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AJ53_PLAHL)

HSP 1 Score: 97.1 bits (240), Expect = 2.540e-21
Identity = 56/98 (57.14%), Postives = 71/98 (72.45%), Query Frame = 1 
Query:   22 VLLETVANPVRRYLRARKDTVRCIVASLTDETSGDLYEELRRQASPEMQHWFTDDDDDGPVAPN-WEPASRDADP--ASGNRSGSDILTMLVSIYGSK 306
            VLLE ++ P++ YLR RKDTVRCIV SLT+E SGDL+EELRR     +QH   D DDD  ++P+ WEP   DADP  +S +RS  DIL +LV+IYGS+
Sbjct:  349 VLLEGLSGPIKEYLRKRKDTVRCIVQSLTEEQSGDLFEELRRDNMRMIQH-DDDSDDDEDISPDSWEPDPIDADPTKSSRSRSSDDILRILVNIYGSR 445
[Close]
BLAST of mRNA_H-elongata_contig98840.17225.1 vs. uniprot
Match: G5A4Q8_PHYSP (Anaphase-promoting complex subunit 2 n=4 Tax=Phytophthora TaxID=4783 RepID=G5A4Q8_PHYSP)

HSP 1 Score: 96.3 bits (238), Expect = 4.710e-21
Identity = 56/98 (57.14%), Postives = 70/98 (71.43%), Query Frame = 1 
Query:   22 VLLETVANPVRRYLRARKDTVRCIVASLTDETSGDLYEELRRQASPEMQHWFTDDDDDGPVAPN-WEPASRDADPA--SGNRSGSDILTMLVSIYGSK 306
            VLLE ++ PV+ YLR RKDTVRCIV SLTDE +GDL+EELRR     +QH   D DDD  ++P+ WEP   +ADP   S +RS  DIL +LV+IYGS+
Sbjct:  354 VLLEALSGPVKEYLRKRKDTVRCIVQSLTDEQNGDLFEELRRDNMRIIQH-DDDSDDDEDISPDTWEPDPIEADPTKTSRSRSSDDILRILVNIYGSR 450
[Close]
BLAST of mRNA_H-elongata_contig98840.17225.1 vs. uniprot
Match: A0A448ZFG1_9STRA (Anaphase-promoting complex subunit 2 n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZFG1_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 3.670e-19
Identity = 57/106 (53.77%), Postives = 71/106 (66.98%), Query Frame = 1 
Query:   13 SQDVLLETVANPVRRYLRARKDTVRCIVASLTD-ETSGDLYEELRRQASPEMQHWFTD-DDDDGPVAPNWEPA-----SRDADPASGNRSGS-DILTMLVSIYGSK 306
            + D LL+ VA PVR YLR R++TVRCI+ SLTD E  GDLYEELRRQ +  ++H   D DD++ P   NW PA      R +  A+G +  S DIL+MLVSIYGSK
Sbjct:  304 ASDRLLQVVAEPVRSYLRQRQNTVRCIITSLTDSEVGGDLYEELRRQDARPLEHGEADSDDEEEPPDMNWTPAPPISKERGSFLATGTKGNSADILSMLVSIYGSK 409
[Close]
BLAST of mRNA_H-elongata_contig98840.17225.1 vs. uniprot
Match: F0YL58_AURAN (Anaphase-promoting complex subunit 2 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YL58_AURAN)

HSP 1 Score: 90.5 bits (223), Expect = 4.980e-19
Identity = 49/97 (50.52%), Postives = 68/97 (70.10%), Query Frame = 1 
Query:   16 QDVLLETVANPVRRYLRARKDTVRCIVASLTDETSGDLYEELRRQASPEMQHWFTDDDDDGPVAPNWEPASRDADPASGNRSGSDILTMLVSIYGSK 306
            +D+LL+ VA PVR YL+ RKDTVRCIVA+LTDE SG+LYEEL R  +P++ +    +D+      +W P S  +  A+ +  G DIL+ML+SIYG+K
Sbjct:  290 RDILLDVVARPVRVYLQRRKDTVRCIVANLTDELSGELYEELHRIDAPQVDYVGDSEDEIAEAGIDWAPRSNKSRLANSSSVG-DILSMLISIYGTK 385
[Close]
BLAST of mRNA_H-elongata_contig98840.17225.1 vs. uniprot
Match: A0A225VZU6_9STRA (Anaphase-promoting complex subunit 2 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VZU6_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 3.230e-18
Identity = 55/103 (53.40%), Postives = 68/103 (66.02%), Query Frame = 1 
Query:   22 VLLETVANPVRRYLRARKDTVRCIVASLTDETSGDLYEELRRQASPEMQHWFTDDDDDGPVAPN-WEPASRDADP-------ASGNRSGSDILTMLVSIYGSK 306
            VLLE +++PV+ YLR RKDTVRCIV SLTDE  GDL+EELRR     +QH   D DDD  ++P+ WEP     DP        S +RS  DIL +LV+IYGS+
Sbjct:  348 VLLEALSDPVKEYLRKRKDTVRCIVQSLTDEQHGDLFEELRRDNMRIIQH-DDDSDDDEDISPDSWEP-----DPXXXXXTKTSRSRSSDDILRILVNIYGSR 444
[Close]
BLAST of mRNA_H-elongata_contig98840.17225.1 vs. uniprot
Match: D0N4D6_PHYIT (Anaphase-promoting complex subunit 2 n=11 Tax=Phytophthora TaxID=4783 RepID=D0N4D6_PHYIT)

HSP 1 Score: 87.8 bits (216), Expect = 4.410e-18
Identity = 56/103 (54.37%), Postives = 68/103 (66.02%), Query Frame = 1 
Query:   22 VLLETVANPVRRYLRARKDTVRCIVASLTDETSGDLYEELRRQASPEMQHWFTDDDDDGPVAPN-WEPASRDADP-------ASGNRSGSDILTMLVSIYGSK 306
            VLLE ++ PV+ YLR RKDTVRCIV SLTDE SGDL+EELRR     +QH   D DDD  ++P+ WEP     DP        S +RS  DIL +LV+IYGS+
Sbjct:  353 VLLEALSCPVKEYLRKRKDTVRCIVQSLTDEQSGDLFEELRRDNMRIIQH-DDDSDDDEDMSPDAWEP-----DPIXXXXTKTSRSRSSDDILRILVNIYGSR 449
[Close]
BLAST of mRNA_H-elongata_contig98840.17225.1 vs. uniprot
Match: A0A1E7F4J4_9STRA (Anaphase-promoting complex subunit 2 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F4J4_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 7.910e-18
Identity = 53/103 (51.46%), Postives = 67/103 (65.05%), Query Frame = 1 
Query:   19 DVLLETVANPVRRYLRARKDTVRCIVASLTD-ETSGDLYEELRRQASPEMQHWFTD-DDDDGPVAPNWEPA-----SRDADPASGNRSGSDILTMLVSIYGSK 306
            D LL+ VA PVR YLR R++TVRCI+ SLTD E  GDLYEELRRQ +  ++H   D DD++ P   +W+P       R     +G  +  DIL+MLVSIYGSK
Sbjct:  120 DRLLQVVAEPVRSYLRQRENTVRCIITSLTDAEVGGDLYEELRRQDARPLEHGQADSDDEEEPPDMDWQPLPPISKERGNFLVTGTGASGDILSMLVSIYGSK 222
[Close]
BLAST of mRNA_H-elongata_contig98840.17225.1 vs. uniprot
Match: A0A2D4BN90_PYTIN (Anaphase-promoting complex subunit 2 n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BN90_PYTIN)

HSP 1 Score: 87.0 bits (214), Expect = 8.270e-18
Identity = 55/100 (55.00%), Postives = 70/100 (70.00%), Query Frame = 1 
Query:   22 VLLETVANPVRRYLRARKDTVRCIVASLTDETSGDLYEELRRQASPEMQHWFTDDDDDGP--VAPN-WEPASRDADPA--SGNRSGSDILTMLVSIYGSK 306
            VLLET++ PV+ YL+ RKDTVRCIV SLTDE + DL+EELRR    EM+    DDD      ++P+ WEP   DADP+  S +RS  DIL +LV+IYGS+
Sbjct:  402 VLLETLSAPVKEYLKQRKDTVRCIVTSLTDEENSDLFEELRRV---EMRVIQQDDDSXXXEDISPDLWEPDPIDADPSKTSRSRSSDDILRILVNIYGSR 498
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig98840.17225.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJM3_9PHAE1.350e-3877.55Anaphase-promoting complex subunit 2 n=1 Tax=Ectoc... [more]
A0A3M6VMT7_9STRA1.860e-2155.67Anaphase-promoting complex subunit 2 n=2 Tax=Peron... [more]
A0A0P1AJ53_PLAHL2.540e-2157.14Anaphase-promoting complex subunit 2 n=1 Tax=Plasm... [more]
G5A4Q8_PHYSP4.710e-2157.14Anaphase-promoting complex subunit 2 n=4 Tax=Phyto... [more]
A0A448ZFG1_9STRA3.670e-1953.77Anaphase-promoting complex subunit 2 n=1 Tax=Pseud... [more]
F0YL58_AURAN4.980e-1950.52Anaphase-promoting complex subunit 2 n=1 Tax=Aureo... [more]
A0A225VZU6_9STRA3.230e-1853.40Anaphase-promoting complex subunit 2 n=1 Tax=Phyto... [more]
D0N4D6_PHYIT4.410e-1854.37Anaphase-promoting complex subunit 2 n=11 Tax=Phyt... [more]
A0A1E7F4J4_9STRA7.910e-1851.46Anaphase-promoting complex subunit 2 n=1 Tax=Fragi... [more]
A0A2D4BN90_PYTIN8.270e-1855.00Anaphase-promoting complex subunit 2 n=2 Tax=Pythi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig98840contigH-elongata_contig98840:468..1586 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.8
Seed ortholog evalue8e-19
Seed eggNOG ortholog67593.Physo139935
Preferred nameAPC2
KEGG koko:K03349
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00389
GOsGO:0000151,GO:0000152,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005680,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009553,GO:0009561,GO:0009987,GO:0010498,GO:0015630,GO:0016567,GO:0019538,GO:0019899,GO:0019941,GO:0030163,GO:0031145,GO:0031461,GO:0031625,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0036211,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0048229,GO:0048856,GO:0051603,GO:0070647,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
EggNOG free text desc.ubiquitin protein ligase binding
EggNOG OGs3QDAN@4776,KOG2165@1,KOG2165@2759
COG Functional cat.DO
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931377.958264-CDS-H-elongata_contig98840:467..6461622931377.958264-CDS-H-elongata_contig98840:467..646Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig98840 468..646 +
1691679811.5878963-CDS-H-elongata_contig98840:467..6461691679811.5878963-CDS-H-elongata_contig98840:467..646Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig98840 468..646 +
1622931377.9769156-CDS-H-elongata_contig98840:1459..15861622931377.9769156-CDS-H-elongata_contig98840:1459..1586Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig98840 1460..1586 +
1691679811.6080084-CDS-H-elongata_contig98840:1459..15861691679811.6080084-CDS-H-elongata_contig98840:1459..1586Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig98840 1460..1586 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig98840.17225.1prot_H-elongata_contig98840.17225.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig98840 468..1586 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig98840.17225.1

>prot_H-elongata_contig98840.17225.1 ID=prot_H-elongata_contig98840.17225.1|Name=mRNA_H-elongata_contig98840.17225.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=102bp
RARSSQDVLLETVANPVRRYLRARKDTVRCIVASLTDETSGDLYEELRRQ
ASPEMQHWFTDDDDDGPVAPNWEPASRDADPASGNRSGSDILTMLVSIYG
SK
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mRNA from alignment at H-elongata_contig98840:468..1586+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig98840.17225.1 ID=mRNA_H-elongata_contig98840.17225.1|Name=mRNA_H-elongata_contig98840.17225.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1119bp|location=Sequence derived from alignment at H-elongata_contig98840:468..1586+ (Himanthalia elongata Himel1 dioecious)
CGCGCGCGCTCATCTCAGGACGTCTTGCTGGAGACGGTGGCCAACCCTGT
GCGGCGCTATCTTCGTGCCCGCAAAGACACGGTACGATGCATCGTCGCAT
CGCTCACCGACGAGACTAGTGGCGACCTTTACGAGGAGCTCAGGAGGCAG
GCGAGTCCTGAAATGCAGCATTGGTTCACGTGGCGAGTCGGGGAGGGGCG
GGGTGATGGCGGGCCGGGGGGTTGCTTGTTGTGGTCGTTCTCGTTCAACA
TAAAATATATAAATAAGAATATAGATGGTCGTAGTTGCGGATTGGCCTTG
TGCATGCGAACTTCCCACTCCCCTCCGGCCATCGCGTGAACGACGGCGTC
CGCGACTTTTTGCTGGAGCTGATCGCTTCCAACCGCGGCATCATCTCTCA
CGCGATGGCTCCGAAAAGGCGTGTTTTTGACCCAGGCCGTGTTCCAAAGG
TCCCTTCCACGCGATCGGTTCCCCAATCATTTCTCTCTCTCTGTCTCTCT
CTCTCTCTCTGCCATAGTATTTCTATCTCTCTATCTCTCCCTTTATTTTC
CTCGGGTTAACTTCGTTTCTTGGAATGATGCAGTTTGATGCTATATAGAC
TTTGTTGGCTCAAGGCCTCTCCGAAGCCCGCCCAAGGCCTCACTATTAAT
AGAGCAACGTCAACTCTTCCTGTGCCTTCATGTCTGCGCCGCTCGTCATA
AGCCGCCCCGGTGTTAAATCGACTAATTTCTTTCTTTCTTTTTTCCATCT
GTTTATGTATATATGTATTTATATATGCATGTCTTGGGTGTTTCATCTTC
CGGCTGTGCGTCTCTCTTTCTCCTTCTCTCTATATCTCTCTCTATCATAG
TCTGTCCTCTCTCTCCTTCTCTCTATATCTATCTCTGTCATAGTCTGTCC
TCTCTCTTCTCTCTATATATATCTCCCTCCGGTGTTTGGCTTTGGCATTG
TGTGTAACAGGACGCGCGACCCTTAGATCGAGAGGACGGTAGCGATGATG
ATGACGACGGCCCCGTGGCACCAAACTGGGAACCGGCCTCTCGCGACGCT
GATCCGGCAAGCGGCAACAGGAGCGGGAGCGATATCCTCACCATGCTGGT
GTCGATTTACGGAAGCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig98840:468..1586+

>mRNA_H-elongata_contig98840.17225.1 ID=mRNA_H-elongata_contig98840.17225.1|Name=mRNA_H-elongata_contig98840.17225.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=612bp|location=Sequence derived from alignment at H-elongata_contig98840:468..1586+ (Himanthalia elongata Himel1 dioecious)
CGCGCGCGCTCATCTCAGGACGTCTTGCTGGAGACGGTGGCCAACCCTGT
GCGGCGCTATCTTCGTGCCCGCAAAGACACGGTACGATGCATCGTCGCAT
CGCTCACCGACGAGACTAGTGGCGACCTTTACGAGGAGCTCAGGAGGCAG
GCGAGTCCTGAAATGCAGCATTGGTTCACCGCGCGCGCTCATCTCAGGAC
GTCTTGCTGGAGACGGTGGCCAACCCTGTGCGGCGCTATCTTCGTGCCCG
CAAAGACACGGTACGATGCATCGTCGCATCGCTCACCGACGAGACTAGTG
GCGACCTTTACGAGGAGCTCAGGAGGCAGGCGAGTCCTGAAATGCAGCAT
TGGTTCACCGATGATGATGACGACGGCCCCGTGGCACCAAACTGGGAACC
GGCCTCTCGCGACGCTGATCCGGCAAGCGGCAACAGGAGCGGGAGCGATA
TCCTCACCATGCTGGTGTCGATTTACGGAAGCAAGCGATGATGATGACGA
CGGCCCCGTGGCACCAAACTGGGAACCGGCCTCTCGCGACGCTGATCCGG
CAAGCGGCAACAGGAGCGGGAGCGATATCCTCACCATGCTGGTGTCGATT
TACGGAAGCAAG
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