mRNA_H-elongata_contig97720.17116.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig97720.17116.1
Unique NamemRNA_H-elongata_contig97720.17116.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig97720.17116.1 vs. uniprot
Match: A0A6H5K8E9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8E9_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 9.220e-37
Identity = 66/94 (70.21%), Postives = 76/94 (80.85%), Query Frame = 1
Query:   13 LVPEEAQILIERVLIAGFVLCLLVLVGCGLAIAAEAYFLATKGKLPPDLDSFVVQTIEPLFSPSLVATFGFSSAWGVLKLGQMGQEGVAYKEDD 294
            L+P E Q+++ERV IAGF +CLL LV CG AI  EAYFL+T GKLPPDLD F+V T+EPLF+PSL ATF FSS  GVLKLGQMGQE V Y+EDD
Sbjct:  191 LIPPETQLVMERVFIAGFAVCLLFLVACGCAIGVEAYFLSTNGKLPPDLDKFIVGTLEPLFTPSLGATFLFSSCLGVLKLGQMGQESVVYREDD 284          
BLAST of mRNA_H-elongata_contig97720.17116.1 vs. uniprot
Match: A0A835Z5R9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5R9_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 4.350e-20
Identity = 44/91 (48.35%), Postives = 60/91 (65.93%), Query Frame = 1
Query:   16 VPEEAQILIERVLIAGFVLCLLVLVGCGLAIAAEAYFLATKGKLPPDLDSFVVQTIEPLFSPSLVATFGFSSAWGVLKLGQMGQEGVAYKE 288
            +P E Q  IE+ LI G   CL   +  G+A+  EAY + TK  LP ++D F+V T+EP F+PSL+ T GFSS  G+ KLGQ+G+ GV Y+E
Sbjct:  162 IPVELQGGIEKFLITGIACCLTFFLASGIALGLEAYAVTTKVPLPDNVDQFIVSTLEPAFTPSLLVTLGFSSVLGIFKLGQLGRAGVNYRE 252          
BLAST of mRNA_H-elongata_contig97720.17116.1 vs. uniprot
Match: A0A7S1E063_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E063_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 5.790e-14
Identity = 36/96 (37.50%), Postives = 55/96 (57.29%), Query Frame = 1
Query:    4 LVQLVPEEAQILIERVLIAGFVLCLLVLVGCGLAIAAEAYFLATKGKLPPDLDSFVVQTIEPLFSPSLVATFGFSSAWGVLKLGQMGQEGVAYKED 291
            ++ ++P      I+R L AG  +  L+ +  G AI AEA+  A+K  LP D+D F+V  +EP F+P L+   GFS + G+    Q+G  G  Y+ED
Sbjct:   14 IISVIPAPLLTAIDRFLKAGLAITTLLFIAAGGAITAEAWSKASKSPLPGDIDQFIVNIVEPNFTPCLLVLLGFSVSLGIFAALQLGSSGSQYRED 109          
BLAST of mRNA_H-elongata_contig97720.17116.1 vs. uniprot
Match: A0A7S1YJJ7_9STRA (Hypothetical protein n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YJJ7_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 2.350e-13
Identity = 38/96 (39.58%), Postives = 54/96 (56.25%), Query Frame = 1
Query:    4 LVQLVPEEAQILIERVLIAGFVLCLLVLVGCGLAIAAEAYFLATKGKLPPDLDSFVVQTIEPLFSPSLVATFGFSSAWGVLKLGQMGQEGVAYKED 291
            L++ +P    + I+R L AG  +  ++ V  GL I  EA+  AT   LP D+D+F+V T+EP F+P L    GFS + GV    Q+G  G  Y ED
Sbjct:  225 LMEALPAPLLVAIDRFLKAGVAVSTVLFVAAGLGITLEAWSTATNSPLPDDIDAFIVNTVEPNFTPGLFVLLGFSVSLGVFAAAQLGSSGSKYTED 320          
BLAST of mRNA_H-elongata_contig97720.17116.1 vs. uniprot
Match: A0A7S3ZRQ2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZRQ2_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 5.130e-12
Identity = 39/99 (39.39%), Postives = 59/99 (59.60%), Query Frame = 1
Query:   16 VPEEAQILIERVLIAGFVLCLLVLVGCGLAIAAEAYFLATKGKLPPDLDSFVVQTIEPLFSPSLVATFGFSSAWGVLKLGQMGQ------EGVAYKEDD 294
            VP++ Q+  E++L+ G +LCL V V  G AI  +A+ +A+   L P + +F+V  +EP F+P+LVA F  S + G LK  Q+        EGV Y E+D
Sbjct:  162 VPDDVQVAAEKILLGGGLLCLAVFVFIGGAITVDAFSVASGSPLEPGMKAFIVDVLEPKFTPTLVAGFACSISLGGLKALQLTSDDAQYSEGVQYSEED 260          
BLAST of mRNA_H-elongata_contig97720.17116.1 vs. uniprot
Match: A0A7S0Y843_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0Y843_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.850e-10
Identity = 34/96 (35.42%), Postives = 53/96 (55.21%), Query Frame = 1
Query:    4 LVQLVPEEAQILIERVLIAGFVLCLLVLVGCGLAIAAEAYFLATKGKLPPDLDSFVVQTIEPLFSPSLVATFGFSSAWGVLKLGQMGQEGVAYKED 291
            L+Q++P+   + I++ L  G V+C ++ V  GLAI  EA   AT   LP D+D+F++  +EP F+P L     FS   G+    Q+      Y+ED
Sbjct:  161 LLQVIPDPILVFIDKFLKVGVVVCTILFVLAGLAITVEAGSKATANPLPADVDAFIMNVVEPNFTPGLGVLLSFSVGLGLFASLQLNSAASTYRED 256          
BLAST of mRNA_H-elongata_contig97720.17116.1 vs. uniprot
Match: A0A7S3TW81_9SPIT (Hypothetical protein n=2 Tax=Choreotrichia TaxID=141411 RepID=A0A7S3TW81_9SPIT)

HSP 1 Score: 63.9 bits (154), Expect = 3.490e-10
Identity = 35/95 (36.84%), Postives = 55/95 (57.89%), Query Frame = 1
Query:   16 VPEEAQILIERVLIAGFVLCLLVLVGCGLAIAAEAYFLATKGKLPPDLDSFVVQTIEPLFSPSLVATFGFSSAWGVLKLGQMGQE--GVAYKEDD 294
            +P++ Q L+ER    G +L   + +  G+A++ EA        LP  +D F+V T+EP+ +PS++  F FS + G+LK  Q   E  GV Y+EDD
Sbjct:  129 IPKKGQELLERFFGGGAILFGFIFIASGIAVSVEALCKVLDKPLPQFVDDFLVNTVEPILTPSILILFFFSISLGLLKQLQFSSESAGVLYREDD 223          
BLAST of mRNA_H-elongata_contig97720.17116.1 vs. uniprot
Match: A0A7S3L3H2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L3H2_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 4.020e-9
Identity = 32/90 (35.56%), Postives = 50/90 (55.56%), Query Frame = 1
Query:    4 LVQLVPEEAQILIERVLIAGFVLCLLVLVGCGLAIAAEAYFLATKGKLPPDLDSFVVQTIEPLFSPSLVATFGFSSAWGVLKLGQMGQEG 273
            ++ ++P      ++  L  G VL     +  G+ I AEA+  A+   LPPD+D+F+V  +EP F+P L+   GFS + GVL    +G EG
Sbjct:  186 IIAMIPAPVLKALDAFLKGGVVLSGTAFIVAGILITAEAWSKASGQALPPDMDNFIVNVVEPNFTPGLLVVLGFSVSLGVLAAASLGSEG 275          
BLAST of mRNA_H-elongata_contig97720.17116.1 vs. uniprot
Match: A0A7S3QAY9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QAY9_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 4.460e-8
Identity = 31/84 (36.90%), Postives = 44/84 (52.38%), Query Frame = 1
Query:   40 IERVLIAGFVLCLLVLVGCGLAIAAEAYFLATKGKLPPDLDSFVVQTIEPLFSPSLVATFGFSSAWGVLKLGQMGQEGVAYKED 291
            I+  L  G  L  +  V  G  I AEA+ +AT  KLP ++D+F+V  IEP F+P L+    FS   G+    Q+      YKE+
Sbjct:  164 IDAFLKLGLTLSTVAFVLAGFGITAEAWAIATDNKLPENIDNFIVNVIEPNFTPGLLVLLSFSVCLGIFATAQLASGSSMYKEE 247          
BLAST of mRNA_H-elongata_contig97720.17116.1 vs. uniprot
Match: A0A7S1DDA1_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DDA1_CYCTE)

HSP 1 Score: 53.5 bits (127), Expect = 2.800e-6
Identity = 28/75 (37.33%), Postives = 42/75 (56.00%), Query Frame = 1
Query:    4 LVQLVPEEAQILIERVLIAGFVLCLLVLVGCGLAIAAEAYFLATKGKLPPDLDSFVVQTIEPLFSPSLVATFGFS 228
            L+  +PE   I I+R L  G  +  L  V  G+ I AEA+   +   LP ++D+F+V T+EP F+P L+    FS
Sbjct:  162 LIAALPEPVVIAIDRFLKIGVAISTLTFVAAGIGITAEAWSNVSGDPLPENIDNFIVNTVEPNFTPGLLVLLAFS 236          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig97720.17116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5K8E9_9PHAE9.220e-3770.21Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z5R9_9STRA4.350e-2048.35Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1E063_9STRA5.790e-1437.50Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7S1YJJ7_9STRA2.350e-1339.58Hypothetical protein n=2 Tax=Grammatophora oceanic... [more]
A0A7S3ZRQ2_9STRA5.130e-1239.39Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S0Y843_9STRA1.850e-1035.42Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A7S3TW81_9SPIT3.490e-1036.84Hypothetical protein n=2 Tax=Choreotrichia TaxID=1... [more]
A0A7S3L3H2_9STRA4.020e-935.56Hypothetical protein (Fragment) n=1 Tax=Amphora co... [more]
A0A7S3QAY9_9STRA4.460e-836.90Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S1DDA1_CYCTE2.800e-637.33Hypothetical protein (Fragment) n=1 Tax=Cyclophora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig97720contigH-elongata_contig97720:188..647 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.5
Seed ortholog evalue3.4e-30
Seed eggNOG ortholog2880.D8LNL5
EggNOG OGs2CAEN@1,2SG8G@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-08_006670.1
Exons2
Model size297
Cds size297
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931367.7518926-CDS-H-elongata_contig97720:187..3641622931367.7518926-CDS-H-elongata_contig97720:187..364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97720 188..364 +
1691679807.521503-CDS-H-elongata_contig97720:187..3641691679807.521503-CDS-H-elongata_contig97720:187..364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97720 188..364 +
1622931367.7850745-CDS-H-elongata_contig97720:527..6471622931367.7850745-CDS-H-elongata_contig97720:527..647Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97720 528..647 +
1691679807.5334024-CDS-H-elongata_contig97720:527..6471691679807.5334024-CDS-H-elongata_contig97720:527..647Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig97720 528..647 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig97720.17116.1prot_H-elongata_contig97720.17116.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig97720 188..647 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig97720.17116.1

>prot_H-elongata_contig97720.17116.1 ID=prot_H-elongata_contig97720.17116.1|Name=mRNA_H-elongata_contig97720.17116.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
ALVQLVPEEAQILIERVLIAGFVLCLLVLVGCGLAIAAEAYFLATKGKLP
PDLDSFVVQTIEPLFSPSLVATFGFSSAWGVLKLGQMGQEGVAYKEDD*
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mRNA from alignment at H-elongata_contig97720:188..647+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig97720.17116.1 ID=mRNA_H-elongata_contig97720.17116.1|Name=mRNA_H-elongata_contig97720.17116.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=460bp|location=Sequence derived from alignment at H-elongata_contig97720:188..647+ (Himanthalia elongata Himel1 dioecious)
GCTCTGGTGCAGCTTGTTCCAGAGGAGGCGCAGATTCTGATTGAGAGGGT TTTGATCGCGGGGTTCGTGTTGTGCCTTCTCGTGTTGGTGGGGTGTGGGC TAGCCATCGCGGCGGAGGCGTACTTCCTGGCCACCAAGGGCAAGCTACCT CCTGACCTGGACAGTTTCGTGGTGCAGGTGATACAGGAAATATCATGTAG CGCACATAAATACCAATCGAAACATTGGCTGTTGGCGCATCGCTAGACCC CCTTGCACAGGCACCACACGACTGAGACCACTTCCTGAGTCGCCCTTCAC TTTACCCCCTACGCCACCGTTGCCTTGGCCGTTCGTTTAGACCATCGAAC CTTTGTTCTCCCCAAGCCTGGTTGCGACGTTCGGGTTCTCCAGCGCTTGG GGGGTGCTCAAGCTCGGGCAAATGGGACAAGAAGGTGTTGCTTACAAAGA GGATGACTGA
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Coding sequence (CDS) from alignment at H-elongata_contig97720:188..647+

>mRNA_H-elongata_contig97720.17116.1 ID=mRNA_H-elongata_contig97720.17116.1|Name=mRNA_H-elongata_contig97720.17116.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig97720:188..647+ (Himanthalia elongata Himel1 dioecious)
GCTCTGGTGCAGCTTGTTCCAGAGGAGGCGCAGATTCTGATTGAGAGGGT
TTTGATCGCGGGGTTCGTGTTGTGCCTTCTCGTGTTGGTGGGGTGTGGGC
TAGCCATCGCGGCGGAGGCGTACTTCCTGGCCACCAAGGGCAAGCTACCT
CCTGACCTGGACAGTTTCGTGGTGCAGGCTCTGGTGCAGCTTGTTCCAGA
GGAGGCGCAGATTCTGATTGAGAGGGTTTTGATCGCGGGGTTCGTGTTGT
GCCTTCTCGTGTTGGTGGGGTGTGGGCTAGCCATCGCGGCGGAGGCGTAC
TTCCTGGCCACCAAGGGCAAGCTACCTCCTGACCTGGACAGTTTCGTGGT
GCAGACCATCGAACCTTTGTTCTCCCCAAGCCTGGTTGCGACGTTCGGGT
TCTCCAGCGCTTGGGGGGTGCTCAAGCTCGGGCAAATGGGACAAGAAGGT
GTTGCTTACAAAGAGGATGACTGAACCATCGAACCTTTGTTCTCCCCAAG
CCTGGTTGCGACGTTCGGGTTCTCCAGCGCTTGGGGGGTGCTCAAGCTCG
GGCAAATGGGACAAGAAGGTGTTGCTTACAAAGAGGATGACTGA
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