mRNA_H-elongata_contig94509.16873.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig94509.16873.1
Unique NamemRNA_H-elongata_contig94509.16873.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig94509.16873.1 vs. uniprot
Match: D8LHF0_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHF0_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 3.160e-35
Identity = 64/90 (71.11%), Postives = 77/90 (85.56%), Query Frame = 3
Query:    6 KLRKDLVETYLPLWLGNLEKFLEAAGGMYFAGNKLSIGDIAVVARLNWLKDGTLEGIPTTIVDEYPLLLALVDRVMSEPKIVAYMKNAPR 275
            +LRKDLVET LP WL NLEK L+ AGG YFAG+KLSIGDIAVVARLNWL DGT EG+P+T++DE PL+ +LV RVM+EP+IVAYM+  P+
Sbjct:  116 QLRKDLVETLLPTWLANLEKALKLAGGEYFAGDKLSIGDIAVVARLNWLTDGTFEGVPSTLLDESPLVSSLVQRVMAEPRIVAYMEERPK 205          
BLAST of mRNA_H-elongata_contig94509.16873.1 vs. uniprot
Match: A0A6H5JAZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAZ7_9PHAE)

HSP 1 Score: 133 bits (334), Expect = 5.840e-35
Identity = 62/90 (68.89%), Postives = 77/90 (85.56%), Query Frame = 3
Query:    6 KLRKDLVETYLPLWLGNLEKFLEAAGGMYFAGNKLSIGDIAVVARLNWLKDGTLEGIPTTIVDEYPLLLALVDRVMSEPKIVAYMKNAPR 275
            +LRKDLVET LP WL N EK L+ AGG YFAG+KLSIGDIAVVARLNWL DGT EG+P+T+++E+PLL +LV R+M+EP+IVAYM+  P+
Sbjct:   66 QLRKDLVETLLPPWLTNSEKALKLAGGKYFAGDKLSIGDIAVVARLNWLTDGTFEGVPSTLLEEFPLLSSLVQRIMAEPRIVAYMEGRPK 155          
BLAST of mRNA_H-elongata_contig94509.16873.1 vs. uniprot
Match: B1N8E6_9PHAE (Glutathione S-transferase 1 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B1N8E6_9PHAE)

HSP 1 Score: 127 bits (319), Expect = 3.960e-32
Identity = 61/90 (67.78%), Postives = 73/90 (81.11%), Query Frame = 3
Query:    3 LKLRKDLVETYLPLWLGNLEKFLEAAGGMYFAGNKLSIGDIAVVARLNWLKDGTLEGIPTTIVDEYPLLLALVDRVMSEPKIVAYMKNAP 272
            L++RK + + YLP WLGNLE+ L+AAGG YFAG KLSIGDI VVARLNWLK G L+GIP TIVD++PLL ALV  VMSE KIV Y+++ P
Sbjct:  116 LEMRKAMTDNYLPTWLGNLERALKAAGGSYFAGGKLSIGDIYVVARLNWLKRGALDGIPDTIVDDFPLLSALVQSVMSEEKIVKYLESGP 205          
BLAST of mRNA_H-elongata_contig94509.16873.1 vs. uniprot
Match: D8LK37_ECTSI (Glutathione S-transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK37_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 1.250e-30
Identity = 61/91 (67.03%), Postives = 74/91 (81.32%), Query Frame = 3
Query:    6 KLRKDLVETYLPLWLGNLEKFLEAAGGMYFAGNKLSIGDIAVVARLNWLKDGTL-EGIPTTIVDEYPLLLALVDRVMSEPKIVAYMKNAPR 275
            +L KDLVE  LP WL NLEK L+ AGG YFAG+KLSIGDIAVVARLNWL DGT  E +P+ I++E+PLL +LV RVM+EP+IVAYM+  P+
Sbjct:  116 QLLKDLVEKLLPPWLANLEKALKLAGGKYFAGDKLSIGDIAVVARLNWLTDGTFDESVPSAILEEFPLLSSLVQRVMAEPRIVAYMEERPK 206          
BLAST of mRNA_H-elongata_contig94509.16873.1 vs. uniprot
Match: B1N8E7_9PHAE (Glutathione S-transferase 2 n=1 Tax=Laminaria digitata TaxID=80365 RepID=B1N8E7_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.430e-30
Identity = 59/93 (63.44%), Postives = 74/93 (79.57%), Query Frame = 3
Query:    3 LKLRKDLVETYLPLWLGNLEKFLEAAGGMYFAGNKLSIGDIAVVARLNWLKDGTLEGIPTTIVDEYPLLLALVDRVMSEPKIVAYMKNAPRST 281
            +++R++LV  +LP WLGNLEK L  AGG YFAG KLSIGDIAVVARL WLK+G+L+GIPT+IVDEYPLL AL++RV +EP I  Y +    +T
Sbjct:  118 MEMRQNLVRDFLPTWLGNLEKALANAGGTYFAGGKLSIGDIAVVARLVWLKEGSLDGIPTSIVDEYPLLSALIERVNAEPNIAKYHQERSETT 210          
BLAST of mRNA_H-elongata_contig94509.16873.1 vs. uniprot
Match: D7FHE9_ECTSI (Glutathione S-transferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHE9_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 8.220e-17
Identity = 38/86 (44.19%), Postives = 59/86 (68.60%), Query Frame = 3
Query:    3 LKLRKDLVETYLPLWLGNLEKFLEAAGGMYFAGNKLSIGDIAVVARLNWLKDGTLEGIPTTIVDEYPLLLALVDRVMSEPKIVAYM 260
            +++R DL   Y+P WL N+EK L +  G +F G ++++ D+ +  RL+ +K+G L+GIPTTI D  P L AL D V+SEPK+ A++
Sbjct:   24 MEMRADLAANYIPKWLSNMEKQLSSTDGTFFDG-QMTVADMMIAYRLHHMKNGVLDGIPTTIADSCPSLCALYDAVVSEPKVAAFL 108          
BLAST of mRNA_H-elongata_contig94509.16873.1 vs. uniprot
Match: A0A6H5KRV2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRV2_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 3.930e-16
Identity = 37/86 (43.02%), Postives = 60/86 (69.77%), Query Frame = 3
Query:    3 LKLRKDLVETYLPLWLGNLEKFLEAAGGMYFAGNKLSIGDIAVVARLNWLKDGTLEGIPTTIVDEYPLLLALVDRVMSEPKIVAYM 260
            +++R DL   ++P WL N+EK L +  G +F  +K+++ DI +  RL+ +++G L+GIPTTI D YP L A+ D V+SEPK+ A++
Sbjct:  116 MEMRADLAANFIPKWLSNMEKQLSSTDGTFFF-DKMTVADIMIACRLHPMRNGVLDGIPTTIADSYPSLCAMCDAVVSEPKVAAFL 200          
BLAST of mRNA_H-elongata_contig94509.16873.1 vs. uniprot
Match: A0A2E1MVP6_9BACT (Uncharacterized protein n=1 Tax=Candidatus Marinimicrobia bacterium TaxID=2026760 RepID=A0A2E1MVP6_9BACT)

HSP 1 Score: 71.6 bits (174), Expect = 3.950e-11
Identity = 35/84 (41.67%), Postives = 49/84 (58.33%), Query Frame = 3
Query:   12 RKDLVETYLPLWLGNLEKFL-EAAGGMYFAGNKLSIGDIAVVARLNWLKDGTLEGIPTTIVDEYPLLLALVDRVMSEPKIVAYM 260
            RK L   +LP W   LE  L +    +YF  N L+I D+A+   L WLK G L+G+PTTI+DEY  L  L + +   PK++ +M
Sbjct:  127 RKILATNHLPKWFQFLENLLRQNTKSVYFVDNNLTIADLAIWRLLGWLKSGMLDGVPTTILDEYENLNKLREEIYKNPKVIKWM 210          
BLAST of mRNA_H-elongata_contig94509.16873.1 vs. uniprot
Match: A0A7Y1XUA7_9GAMM (Glutathione S-transferase n=1 Tax=Woeseiaceae bacterium TaxID=2026806 RepID=A0A7Y1XUA7_9GAMM)

HSP 1 Score: 66.6 bits (161), Expect = 1.940e-9
Identity = 34/86 (39.53%), Postives = 53/86 (61.63%), Query Frame = 3
Query:   12 RKDLVETYLPLWLGNLEKFLEAAGGMYFAGNKLSIGDIAVVARLNWLKDGTLEGIPTTIVDEY-PLLLALVDRVMSEPKIVAYMKN 266
            R+ LVE +L  ++  LE  L   GG YFA  KL+I D+ V  +   L+ GTL+ +PT +VD+  P L A  +RV  +P+++AY ++
Sbjct:  118 REKLVEGWLTTYIRGLEGLLTRGGGEYFADGKLTIADLKVFTQTRSLRSGTLDHVPTDLVDKLAPGLAAHQERVQDDPRVIAYYES 203          
BLAST of mRNA_H-elongata_contig94509.16873.1 vs. uniprot
Match: UPI0006813309 (glutathione S-transferase C-terminal domain-containing protein n=1 Tax=Hyphomicrobiales TaxID=356 RepID=UPI0006813309)

HSP 1 Score: 60.5 bits (145), Expect = 6.580e-8
Identity = 31/83 (37.35%), Postives = 51/83 (61.45%), Query Frame = 3
Query:   12 RKDLVETYLPLWLGNLEKFLEAAGGMYFAGNKLSIGDIAVVARLNWLKDGTLEGIPTTIVDEY-PLLLALVDRVMSEPKIVAY 257
            RK LV+  +P +L  L + LEA GG YFAG++LS+ D+ V+  +  L  G L+ +P  + +   P L+   +RVM++ ++ AY
Sbjct:   26 RKALVDGPIPFYLTRLGQRLEAHGGRYFAGDRLSVADLKVLMLIRQLTSGVLDHVPMDLTERMAPALVEHSERVMNDARVKAY 108          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig94509.16873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D8LHF0_ECTSI3.160e-3571.11Glutathione S-transferase n=1 Tax=Ectocarpus silic... [more]
A0A6H5JAZ7_9PHAE5.840e-3568.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
B1N8E6_9PHAE3.960e-3267.78Glutathione S-transferase 1 n=1 Tax=Laminaria digi... [more]
D8LK37_ECTSI1.250e-3067.03Glutathione S-transferase n=1 Tax=Ectocarpus silic... [more]
B1N8E7_9PHAE1.430e-3063.44Glutathione S-transferase 2 n=1 Tax=Laminaria digi... [more]
D7FHE9_ECTSI8.220e-1744.19Glutathione S-transferase n=2 Tax=Ectocarpus TaxID... [more]
A0A6H5KRV2_9PHAE3.930e-1643.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2E1MVP6_9BACT3.950e-1141.67Uncharacterized protein n=1 Tax=Candidatus Marinim... [more]
A0A7Y1XUA7_9GAMM1.940e-939.53Glutathione S-transferase n=1 Tax=Woeseiaceae bact... [more]
UPI00068133096.580e-837.35glutathione S-transferase C-terminal domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig94509contigH-elongata_contig94509:466..1929 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size895
Cds size210
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig94509.16873.1prot_H-elongata_contig94509.16873.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig94509 1065..1513 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931341.1745493-UTR-H-elongata_contig94509:465..10641622931341.1745493-UTR-H-elongata_contig94509:465..1064Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig94509 466..1064 -
1691679796.7794273-UTR-H-elongata_contig94509:465..10641691679796.7794273-UTR-H-elongata_contig94509:465..1064Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig94509 466..1064 -
1622931341.2279427-UTR-H-elongata_contig94509:1513..15561622931341.2279427-UTR-H-elongata_contig94509:1513..1556Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig94509 1514..1556 -
1691679796.812997-UTR-H-elongata_contig94509:1513..15561691679796.812997-UTR-H-elongata_contig94509:1513..1556Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig94509 1514..1556 -
1622931341.2431319-UTR-H-elongata_contig94509:1886..19291622931341.2431319-UTR-H-elongata_contig94509:1886..1929Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig94509 1887..1929 -
1691679796.8224688-UTR-H-elongata_contig94509:1886..19291691679796.8224688-UTR-H-elongata_contig94509:1886..1929Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig94509 1887..1929 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931341.1975195-CDS-H-elongata_contig94509:1064..12531622931341.1975195-CDS-H-elongata_contig94509:1064..1253Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94509 1065..1253 -
1691679796.7937768-CDS-H-elongata_contig94509:1064..12531691679796.7937768-CDS-H-elongata_contig94509:1064..1253Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94509 1065..1253 -
1622931341.2127435-CDS-H-elongata_contig94509:1492..15131622931341.2127435-CDS-H-elongata_contig94509:1492..1513Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94509 1493..1513 -
1691679796.8040957-CDS-H-elongata_contig94509:1492..15131691679796.8040957-CDS-H-elongata_contig94509:1492..1513Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig94509 1493..1513 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig94509.16873.1

>prot_H-elongata_contig94509.16873.1 ID=prot_H-elongata_contig94509.16873.1|Name=mRNA_H-elongata_contig94509.16873.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=70bp
MYFAGNKLSIGDIAVVARLNWLKDGTLEGIPTTIVDEYPLLLALVDRVMS
EPKIVAYMKNAPRSTMQRL*
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mRNA from alignment at H-elongata_contig94509:466..1929-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig94509.16873.1 ID=mRNA_H-elongata_contig94509.16873.1|Name=mRNA_H-elongata_contig94509.16873.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1464bp|location=Sequence derived from alignment at H-elongata_contig94509:466..1929- (Himanthalia elongata Himel1 dioecious)
AGCTGAAGCTACGCAAAGATCTGGTGGAAACATACCTCCCCTTGTAAGTA TGAACTGTGATAAAATATACTCCGATGTGGTCCTACGCTCGATTGACGCA CAAATTTAGGACCCTCTCTTAAGTAAATAGTTCGATGACCGCCCCGTTAG CAATCGCTGCTTGACGTACGCCCATAAGTGTTGTAATGCATGTGGGTCAT AGGTTCGTTTGCTGAACCCGCGCAAGTGAGACACAGTTGGCAGCCGGTCG ATAGCTAGGGCCATTTTTTCATCGCTTGCAACAGCCTTGTACCCCTCGTC AACCCCCCCCCCTTCCCACAATTCTTCGCCTTTCTCTCGTGGTTTCTCCT TTTTGTTCCGCTTGGGAATGAAGATGGCTGGGGAACTTGGAAAAGTTTCT TGAGGCTGCAGGCGGCATGTACTTCGCCGGTAACAAGGTATGTACCACCG TGTGCAGCTTTCTATTCCTGATTATACGTTCTTGTTCCCACATAAGTGTT GTCTTCCATATGCGGACTACTGTTACTTATCGTTGTATGATGCACGTGGC CACTGAATGAAAAGGCTCAATCCATTAATCAATTCGAGGCTTGATCCCTC CTTCTAACTTAATAGTTCAAAGGCATGGCTCTGAAGCGCACCTCCGTATC CCCCTCGCGTCGTTCACCGTTGGCAGCTTTCGATCGGGGACATTGCCGTG GTAGCCCGTTTGAACTGGCTCAAGGACGGCACACTCGAGGGCATCCCTAC AACGATTGTTGACGAATACCCCCTGCTCTTAGCGCTAGTTGACCGCGTGA TGTCGGAGCCCAAGATCGTGGCCTACATGAAGAACGCTCCCAGATCCACG ATGCAGCGACTTTGAACCATATGTGGACTGTTGTTTCGGTAAAATAGTAT CCTAGCGTCACGGCCTTTGGTAGGGGGTGAAGTTGTTTTGCTCTCGCGTA ATTCCCAGCACAATTATATTTGCTGGTTTTACGACTTTGGATATTCGTCT GGCGAGCGACTTGATGGATTACCCCTTTCACGCTGTTCGTCGTTGTGCGC CAACTTTCTGTGATTATTAAGGTAGCGGTTTGCATCTTTAAGGTCTCCGC CATCGCCCCCTAGTCGCTAATGTCCCTTAATGGATAATTGAGATTACTAG GTGGACATTCATCGTCGGGATACCCGACACGCAATTAGAGTGATGTGGGA CAGGACAATTAATACCAATAAATTACGAGTAGGCCCAGTATGCGTAATCA GTCTCACAGGAGTGTTGTGAAAACGTTACTATACGCTGTAGGCACAACGC GCCGCCTTGACTAAGACATATCGTGGGGTGAGGAGCTTTCTTTCTAGTAA GAGGATACGATATAGGCCAAGCCGATGGGATTAAGGAACTCTCTTTCTAG TGAGAAGTTGTTGAAACTCAGAATTTTCTGTGATGGAATTGAAGCAACCT CTGCGAGCCCAAAA
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Coding sequence (CDS) from alignment at H-elongata_contig94509:466..1929-

>mRNA_H-elongata_contig94509.16873.1 ID=mRNA_H-elongata_contig94509.16873.1|Name=mRNA_H-elongata_contig94509.16873.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=420bp|location=Sequence derived from alignment at H-elongata_contig94509:466..1929- (Himanthalia elongata Himel1 dioecious)
ATGTACTTCGCCGGTAACAAGATGTACTTCGCCGGTAACAAGCTTTCGAT
CGGGGACATTGCCGTGGTAGCCCGTTTGAACTGGCTCAAGGACGGCACAC
TCGAGGGCATCCCTACAACGATTGTTGACGAATACCCCCTGCTCTTAGCG
CTAGTTGACCGCGTGATGTCGGAGCCCAAGATCGTGGCCTACATGAAGAA
CGCTCCCAGATCCACGATGCAGCGACTTTGACTTTCGATCGGGGACATTG
CCGTGGTAGCCCGTTTGAACTGGCTCAAGGACGGCACACTCGAGGGCATC
CCTACAACGATTGTTGACGAATACCCCCTGCTCTTAGCGCTAGTTGACCG
CGTGATGTCGGAGCCCAAGATCGTGGCCTACATGAAGAACGCTCCCAGAT
CCACGATGCAGCGACTTTGA
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