mRNA_H-elongata_contig93859.16821.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig93859.16821.1 vs. uniprot
Match: D8LI95_ECTSI (F-box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI95_ECTSI) HSP 1 Score: 208 bits (529), Expect = 4.290e-65 Identity = 92/113 (81.42%), Postives = 101/113 (89.38%), Query Frame = 1
Query: 4 RSRFNDPQVGDKIEVSWEGRFRLESLDVFVGRSWWEATVVEKIGDGHKYRIHYPGWDSNWDEWVTRNRLRWPVDPSYLSTTFMVRDKIEVWCTGTHVKGAWLQAVVRQVRFSQ 342
R R DP VGDK+EVSWEGRFRLESLDVFVGRSWWEATVV+K+ DG KY+IHYPGWDSNWDEWV R+RLRWPVDPSYLSTTF VR+ +EVWCTGTHVKGAWLQA VRQ++ Q
Sbjct: 95 RYRLEDPLVGDKVEVSWEGRFRLESLDVFVGRSWWEATVVQKM-DGFKYKIHYPGWDSNWDEWVVRDRLRWPVDPSYLSTTFRVREVVEVWCTGTHVKGAWLQARVRQIKQDQ 206
BLAST of mRNA_H-elongata_contig93859.16821.1 vs. uniprot
Match: A0A4D9D060_9STRA (F-box domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D060_9STRA) HSP 1 Score: 150 bits (378), Expect = 1.450e-42 Identity = 62/110 (56.36%), Postives = 84/110 (76.36%), Query Frame = 1
Query: 4 RSRFNDPQVGDKIEVSWEGRFRLESLDVFVGRSWWEATVVEKIGDGHKYRIHYPGWDSNWDEWVTRNRLRWPVDPSYLSTTFMVRDKIEVWCTGTHVKGAWLQAVVRQVR 333
R+R DP VGD +EV+W+G+FRLES+D++ G +WW A VVEK +G +Y+IHYPGWDS WDEWV R+RLRW V+ L+ M D +E+WC G++V GAWL+A VR+V+
Sbjct: 144 RARLLDPYVGDLVEVAWKGKFRLESMDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVPRDRLRWTVEQD-LNKRIMPNDDVEIWCCGSNVPGAWLEAKVRKVK 252
BLAST of mRNA_H-elongata_contig93859.16821.1 vs. uniprot
Match: W7T606_9STRA (F-box domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T606_9STRA) HSP 1 Score: 150 bits (380), Expect = 1.550e-41 Identity = 62/110 (56.36%), Postives = 84/110 (76.36%), Query Frame = 1
Query: 4 RSRFNDPQVGDKIEVSWEGRFRLESLDVFVGRSWWEATVVEKIGDGHKYRIHYPGWDSNWDEWVTRNRLRWPVDPSYLSTTFMVRDKIEVWCTGTHVKGAWLQAVVRQVR 333
R+R DP VGD +EV+W+G+FRLES+D++ G +WW A VVEK +G +Y+IHYPGWDS WDEWV R+RLRW V+ L+ M D +E+WC G++V GAWL+A VR+V+
Sbjct: 266 RARLLDPHVGDLVEVAWKGKFRLESMDIYQGLAWWSAVVVEKGENGARYKIHYPGWDSRWDEWVARDRLRWTVEQD-LNKRIMPNDDVEIWCCGSNVPGAWLEAKVRKVK 374
BLAST of mRNA_H-elongata_contig93859.16821.1 vs. uniprot
Match: A0A835ZI68_9STRA (Tudor-knot domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI68_9STRA) HSP 1 Score: 133 bits (334), Expect = 1.390e-36 Identity = 58/111 (52.25%), Postives = 73/111 (65.77%), Query Frame = 1
Query: 10 RFNDPQVGDKIEVSWEGRFRLESLDVFVGRSWWEATVVEKIGDGHKYRIHYPGWDSNWDEWVTRNRLRWPVDPS---YLSTTFMVRDKIEVWCTGTHVKGAWLQAVVRQVR 333
R PQVGD++EV+W G+FRLESL+VF G +WW A VV + D +Y++HYPGW+ WDEWV+R RLRW D L V D +EVWC G HV GAWL+ V +R
Sbjct: 65 RLLHPQVGDRVEVAWRGKFRLESLEVFSGLAWWLADVVARSDDCRRYKVHYPGWEPRWDEWVSRERLRWGNDARAARLLGHPVEVGDTVEVWCGGVHVPGAWLEGRVSCIR 175
BLAST of mRNA_H-elongata_contig93859.16821.1 vs. uniprot
Match: A0A835ZFT0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFT0_9STRA) HSP 1 Score: 129 bits (325), Expect = 9.050e-35 Identity = 54/111 (48.65%), Postives = 74/111 (66.67%), Query Frame = 1
Query: 10 RFNDPQVGDKIEVSWEGRFRLESLDVFVGRSWWEATVVEKIGDGHKYRIHYPGWDSNWDEWVTRNRLRWPVD---PSYLSTTFMVRDKIEVWCTGTHVKGAWLQAVVRQVR 333
R PQVGD++EV+W G+FRLESL+++ G +WW A +VE DG +Y++HYPGW++ WDE+V R RLRW D V D +E+WC GT+V GAWL+ V +R
Sbjct: 110 RLVRPQVGDRVEVAWRGKFRLESLEIYNGLAWWLAEIVECDADGQRYKVHYPGWEARWDEFVPRERLRWGNDRRAAQLRDERIAVGDMVEIWCGGTNVPGAWLEGRVSSIR 220
BLAST of mRNA_H-elongata_contig93859.16821.1 vs. uniprot
Match: D7FY36_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY36_ECTSI) HSP 1 Score: 129 bits (323), Expect = 6.420e-34 Identity = 55/112 (49.11%), Postives = 74/112 (66.07%), Query Frame = 1
Query: 4 RSRFNDPQVGDKIEVSWEGRFRLESLDVFVGRSWWEATVVEKIGDGHKYRIHYPGWDSNWDEWVTRNRLRWPVD---PSYLSTTFMVRDKIEVWCTGTHVKGAWLQAVVRQV 330
+ R DP VGD+++V+W+G+FRLESL+V+ G +WW A VV+K Y++HYPGW+ WDEWV R+RLRW + D +EVWC G HV GAWL+AVV +V
Sbjct: 151 KRRLLDPHVGDEVQVAWKGKFRLESLEVYDGTAWWLARVVDKGEKPGYYKVHYPGWEPKWDEWVVRDRLRWGNEHLAAPLKGIPLQAGDAVEVWCKGLHVPGAWLEAVVYEV 262
BLAST of mRNA_H-elongata_contig93859.16821.1 vs. uniprot
Match: A0A7S4A403_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A403_9STRA) HSP 1 Score: 125 bits (313), Expect = 2.460e-32 Identity = 54/126 (42.86%), Postives = 78/126 (61.90%), Query Frame = 1
Query: 4 RSRFNDPQVGDKIEVSWEGRFRLESLDVFVGRSWWEATVVEKI---------GDGHK-------YRIHYPGWDSNWDEWVTRNRLRWPVDPSYLSTTFMVRDKIEVWCTGTHVKGAWLQAVVRQVR 333
+ R DP VGD +EV+W G+FRLESL+++ G +WW A VV+K+ G G K Y++ +PGW+ WDEWV+R+RLRW + + RD +EVWC +V GAWL+A V+++R
Sbjct: 166 KQRLEDPHVGDDVEVAWRGKFRLESLEIYRGTAWWVAVVVDKVALDAASGSPGRGRKIHAAKAWYKVTFPGWEGRWDEWVSRDRLRWRAKNTQEADALKPRDFVEVWCGSQNVPGAWLEASVQKIR 291
BLAST of mRNA_H-elongata_contig93859.16821.1 vs. uniprot
Match: A0A8J2SC81_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SC81_9STRA) HSP 1 Score: 124 bits (311), Expect = 4.350e-32 Identity = 58/125 (46.40%), Postives = 76/125 (60.80%), Query Frame = 1
Query: 4 RSRFNDPQVGDKIEVSWEGRFRLESLDVFVGRSWWEATVVEK--------------IGD--GHKYRIHYPGWDSNWDEWVTRNRLRWPVDPSYLSTTFMVRDKIEVWCTGTHVKGAWLQAVVRQV 330
R R DP GD++E++W GRFRLE L+V+ G +WW A VVEK + D KY++HY WD+ WDEWV R++LRWPV P + D +EVWC+G+ V GAWL+AVV V
Sbjct: 153 RQRLGDPAPGDRVEIAWRGRFRLEGLEVYRGLAWWAAEVVEKRDAXXXXXXAPDCPLDDRRARKYKVHYVHWDARWDEWVARDQLRWPV-PEGRTGVVASGDDVEVWCSGSAVPGAWLRAVVTAV 276
BLAST of mRNA_H-elongata_contig93859.16821.1 vs. uniprot
Match: A0A7S3K1B0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K1B0_9STRA) HSP 1 Score: 105 bits (261), Expect = 4.090e-24 Identity = 57/177 (32.20%), Postives = 74/177 (41.81%), Query Frame = 1
Query: 10 RFNDPQVGDKIEVSWEGRFRLESLDVFVGRSWWEATVVEKIGD----------------------------------------------------------------------GHKYRIHYPGWDSNWDEWVTRNRLRWPVDPSYLSTTFMVRDKIEVWCTGTHVKGAWLQAVVRQV 330
R DP GD++EV+W+GRFRLE L+V+ G +WW A V EK + +YR+HY WDS WDEWV+R +LRWPV + T + D +EVWC+G V GAWL+AVV V
Sbjct: 207 RIRDPSTGDRVEVAWQGRFRLEGLEVYRGLAWWAAEVAEKRPNDIASNEEDMIPPEQFPPQHIDNQVVPHEQNHEVDLNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNTSKRYRVHYLNWDSRWDEWVSREQLRWPVQEGK-NCTIEIGDDVEVWCSGNTVPGAWLRAVVDAV 382
BLAST of mRNA_H-elongata_contig93859.16821.1 vs. uniprot
Match: A0A7S3Z4G2_9EUKA (Hypothetical protein n=4 Tax=Lotharella TaxID=74819 RepID=A0A7S3Z4G2_9EUKA) HSP 1 Score: 95.9 bits (237), Expect = 1.790e-21 Identity = 45/124 (36.29%), Postives = 70/124 (56.45%), Query Frame = 1
Query: 7 SRFNDPQVGDKIEVSWEGRFRLESLDV-----FVGRSWWEATVVEKIGDGHK----------YRIHYPGWDSNWDEWVTRNRLRWPVDPSYLSTTFM-VRDKIEVWCTGTHVKGAWLQAVVRQV 330
SR + P+VGD +EV W+G+F +L F G++WW+A+VV + + + YR H+PGW+S WDEW+TR ++RWP Y + + V D +EV T V W++ V++V
Sbjct: 115 SRVSSPRVGDCVEVLWQGKFYSHTLGEHGTMGFEGKAWWQASVVAREPESGENGQQSDNQFYYRAHFPGWESKWDEWITRGQIRWPKPMDYQAELEIDVGDHVEVLLESTRVPSVWMEGDVKKV 238 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig93859.16821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig93859.16821.1 >prot_H-elongata_contig93859.16821.1 ID=prot_H-elongata_contig93859.16821.1|Name=mRNA_H-elongata_contig93859.16821.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp NRSRFNDPQVGDKIEVSWEGRFRLESLDVFVGRSWWEATVVEKIGDGHKYback to top mRNA from alignment at H-elongata_contig93859:89..943- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig93859.16821.1 ID=mRNA_H-elongata_contig93859.16821.1|Name=mRNA_H-elongata_contig93859.16821.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=855bp|location=Sequence derived from alignment at H-elongata_contig93859:89..943- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig93859:89..943- >mRNA_H-elongata_contig93859.16821.1 ID=mRNA_H-elongata_contig93859.16821.1|Name=mRNA_H-elongata_contig93859.16821.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig93859:89..943- (Himanthalia elongata Himel1 dioecious)back to top |