mRNA_H-elongata_contig93793.16812.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig93793.16812.1
Unique NamemRNA_H-elongata_contig93793.16812.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig93793.16812.1 vs. uniprot
Match: A0A2Z6RJ54_9GLOM (Zinc finger protein 862-like n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6RJ54_9GLOM)

HSP 1 Score: 78.2 bits (191), Expect = 1.510e-14
Identity = 53/164 (32.32%), Postives = 81/164 (49.39%), Query Frame = 1
Query:    1 LNQLDMRFDKMDLLEKCAIFDPQRVPTEEGQLCDYGDEEIKELGE--EFGKKHDDVPQC---VDPHELTREWTFAKIIMYYGEKKRKEVSEMFIKLYVDFWRGVKRSLGDGNFPNLFKLVQIYIVQPHLSIECERGFSAQNIIKSKGHNKLPVPRLELLMWLSL 477
            L++L  RF    L     I +P+  P     L  +GD+E++ L E  E    HD+V QC    D ++  +EW   K+++       K++  + + L  D+         +  F N+ KL+Q+    P  S+ECERGFS QN IK+K  N L    L+ LM +SL
Sbjct:   70 LSELQQRFPNRSLFTSMKILNPREWPKNSQDLLFFGDDELENLLEYYEHPNIHDNV-QCSPLFDVNKCRQEWAGFKLVIS-NNLSSKDIDIILLLLIQDY---------NDTFLNIIKLIQLIYCIPFSSVECERGFSRQNQIKTKNRNSLTTDTLDRLMRISL 222          
BLAST of mRNA_H-elongata_contig93793.16812.1 vs. uniprot
Match: A0A015J8B3_RHIIW (Uncharacterized protein n=13 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A015J8B3_RHIIW)

HSP 1 Score: 79.7 bits (195), Expect = 2.110e-14
Identity = 52/165 (31.52%), Postives = 82/165 (49.70%), Query Frame = 1
Query:    1 LNQLDMRFDKMDLLEKCAIFDPQRVPTEEGQLCDYGDEEIKELGE--EFGKKHDDV--PQCVDPHELTREWTFAKIIMY--YGEKKRKEVSEMFIKLYVDFWRGVKRSLGDGNFPNLFKLVQIYIVQPHLSIECERGFSAQNIIKSKGHNKLPVPRLELLMWLSL 477
            +N+L  RF    L     I +P+  P E  +L  +GD E++ + +  E    H+++  P   D ++   EW   K+I+   +     + +  + I+ Y+D             FPN+ KL+QI    P  S+ECERGFS QN IK+K  N L    L++LM +SL
Sbjct:  443 VNELQQRFPTRQLFTSMKILNPREWPKESQELLWFGDNELENILKYYECPNFHNNIQLPAIFDINKCREEWARFKMIITNNFASNDIEVILPLLIEDYIDV------------FPNIIKLIQIAYCIPFSSVECERGFSRQNKIKTKDRNSLATNTLDMLMCISL 595          
BLAST of mRNA_H-elongata_contig93793.16812.1 vs. uniprot
Match: UPI001C19C353 (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C19C353)

HSP 1 Score: 78.2 bits (191), Expect = 7.810e-14
Identity = 50/165 (30.30%), Postives = 80/165 (48.48%), Query Frame = 1
Query:    1 LNQLDMRFDKMDLLEKCAIFDPQRVPTEEGQLCDYGDEEIKELGEEFG----KKHDDVPQCVDPHELTREWTFAKIIMY--YGEKKRKEVSEMFIKLYVDFWRGVKRSLGDGNFPNLFKLVQIYIVQPHLSIECERGFSAQNIIKSKGHNKLPVPRLELLMWLSL 477
            +N+L  RF    L     I +P+  P E  +L  +GD E++ + + +       +  +P   D ++   EW   K+I+   +     + +  + I+ Y+D             FPN+ KL+QI    P  S+ECERGFS QN IK+K  N L    L++LM +SL
Sbjct:  513 VNELQQRFPTRQLFTSMKILNPREWPKESQELLWFGDNELENILKYYECPNFYNNIQLPAIFDINKCREEWARFKMIITNNFASNDIEVILPLLIEDYIDV------------FPNIIKLIQIAYCIPFSSVECERGFSRQNKIKTKDRNSLATNTLDMLMCISL 665          
BLAST of mRNA_H-elongata_contig93793.16812.1 vs. uniprot
Match: UPI001C194A04 (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C194A04)

HSP 1 Score: 74.3 bits (181), Expect = 1.200e-13
Identity = 47/159 (29.56%), Postives = 75/159 (47.17%), Query Frame = 1
Query:    1 LNQLDMRFDKMDLLEKCAIFDPQRVPTEEGQLCDYGDEEIKELGEEFGKKHDDVPQCVDPHELTREWTFAKIIMYYGEKKRKEVSEMFIKLYVDFWRGVKRSLGDGNFPNLFKLVQIYIVQPHLSIECERGFSAQNIIKSKGHNKLPVPRLELLMWLSL 477
            ++++  RF    LL    IFD    P    +L  Y ++E+  L E +GK+     Q +  + +  EW   K I+Y   K   E+  +  KL+  ++           FPN+ +L+ I    P  S++CERGF  QN+IK+   N L +  L  LM + L
Sbjct:    9 ISEIQERFPDRPLLNSMKIFDHTNWPNNREELTSYDEKELNILAEFYGKE-----QIIQVNNICEEWFGYKAIIYVNYKNI-EIELLIPKLFEFYY---------DTFPNIIQLLGIVYSIPFSSVDCERGFLKQNLIKTDLQNSLNIETLHFLMMVGL 152          
BLAST of mRNA_H-elongata_contig93793.16812.1 vs. uniprot
Match: A0A2N1N0J6_9GLOM (DUF4371 domain-containing protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2N1N0J6_9GLOM)

HSP 1 Score: 74.3 bits (181), Expect = 1.290e-12
Identity = 47/159 (29.56%), Postives = 75/159 (47.17%), Query Frame = 1
Query:    1 LNQLDMRFDKMDLLEKCAIFDPQRVPTEEGQLCDYGDEEIKELGEEFGKKHDDVPQCVDPHELTREWTFAKIIMYYGEKKRKEVSEMFIKLYVDFWRGVKRSLGDGNFPNLFKLVQIYIVQPHLSIECERGFSAQNIIKSKGHNKLPVPRLELLMWLSL 477
            ++++  RF    LL    IFD    P    +L  Y ++E+  L E +GK+     Q +  + +  EW   K I+Y   K   E+  +  KL+  ++           FPN+ +L+ I    P  S++CERGF  QN+IK+   N L +  L  LM + L
Sbjct:  232 ISEIQERFPDRPLLNSMKIFDHTNWPNNREELTSYDEKELNILAEFYGKE-----QIIQVNNICEEWFGYKAIIYVNYKNI-EIELLIPKLFEFYY---------DTFPNIIQLLGIVYSIPFSSVDCERGFLKQNLIKTDLQNSLNIETLHFLMMVGL 375          
BLAST of mRNA_H-elongata_contig93793.16812.1 vs. uniprot
Match: A0A8H3LT90_9GLOM (Zinc finger protein 862-like n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A8H3LT90_9GLOM)

HSP 1 Score: 68.9 bits (167), Expect = 1.050e-11
Identity = 47/147 (31.97%), Postives = 74/147 (50.34%), Query Frame = 1
Query:   55 IFDPQRVPTEEGQLCDYGDEEIKELGE--EFGKKHDDV--PQCVDPHELTREWTFAKIIMY--YGEKKRKEVSEMFIKLYVDFWRGVKRSLGDGNFPNLFKLVQIYIVQPHLSIECERGFSAQNIIKSKGHNKLPVPRLELLMWLSL 477
            I +P+  P E  +L  +GD E+  + +  E    H+++  P   D ++   EW   K+I+   +     + +  + I+ Y+D             FPN+ KL+QI    P  S+ECERGFS QN IK+K  N L    L++LM +SL
Sbjct:    3 ILNPREWPKESQELLWFGDNELGNVLKYYECPNFHNNIQLPAIFDINKCREEWARFKMIITNNFASNDIEVILPLLIQDYIDV------------FPNIIKLIQIVYCIPFSSVECERGFSRQNKIKTKDRNSLATNTLDMLMRVSL 137          
BLAST of mRNA_H-elongata_contig93793.16812.1 vs. uniprot
Match: A0A8B6EWY7_MYTGA (Nuclear pore complex protein Nup188 n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6EWY7_MYTGA)

HSP 1 Score: 67.8 bits (164), Expect = 4.640e-11
Identity = 46/153 (30.07%), Postives = 72/153 (47.06%), Query Frame = 1
Query:   19 RFDKMDLLEKCAIFDPQRVPTEEGQLCDYGDEEIKELGEEFGKKHDDVPQCVDPHELTREWTFAKIIMYYGEKKRKEVSEMFIKLYVDFWRGVKRSLGDGNFPNLFKLVQIYIVQPHLSIECERGFSAQNIIKSKGHNKLPVPRLELLMWLSL 477
            RF   +  E  ++F+P   P+    L  YG+++++ LG+ +          ++  EL  EW   K +++   K        F  L       + R      FPN   L++I  + P  S+ECERGFS QNIIK+K    L +  L+ LM +SL
Sbjct:   17 RFPNNNNFEAFSVFEPSNFPSSVADLPRYGEQQLECLGDHYN--------LINQEELQVEWGILKYLIFNNYK-----GLSFADLLTAI---ISRK---DQFPNAISLMEISRILPVSSVECERGFSRQNIIKTKLRCSLGIDALDQLMRISL 150          
BLAST of mRNA_H-elongata_contig93793.16812.1 vs. uniprot
Match: A0A8B6H8G0_MYTGA (DUF4371 domain-containing protein n=2 Tax=Mytilus TaxID=6548 RepID=A0A8B6H8G0_MYTGA)

HSP 1 Score: 68.6 bits (166), Expect = 1.630e-10
Identity = 46/153 (30.07%), Postives = 72/153 (47.06%), Query Frame = 1
Query:   19 RFDKMDLLEKCAIFDPQRVPTEEGQLCDYGDEEIKELGEEFGKKHDDVPQCVDPHELTREWTFAKIIMYYGEKKRKEVSEMFIKLYVDFWRGVKRSLGDGNFPNLFKLVQIYIVQPHLSIECERGFSAQNIIKSKGHNKLPVPRLELLMWLSL 477
            RF    + E  ++F+P   P+    L  YG+++++ LG+ +          ++  EL  EW   K +++   K        F  L       + R      FPN   L++I  + P  S+ECERGFS QNIIK+K    L +  L+ LM +SL
Sbjct:  486 RFPDNKIFEAFSVFEPSNFPSSVADLPRYGEQQLECLGDHYN--------LINQEELQVEWGILKYLIFNNYK-----GLSFADLLTAI---ISRK---DQFPNAISLMEISRILPVSSVECERGFSRQNIIKTKLRCSLGIDSLDQLMRISL 619          
BLAST of mRNA_H-elongata_contig93793.16812.1 vs. uniprot
Match: A0A8H3XKI6_GIGMA (Zinc finger protein n=1 Tax=Gigaspora margarita TaxID=4874 RepID=A0A8H3XKI6_GIGMA)

HSP 1 Score: 64.7 bits (156), Expect = 4.900e-10
Identity = 44/149 (29.53%), Postives = 74/149 (49.66%), Query Frame = 1
Query:   37 LLEKCAIFDPQRVPTEEGQLCDYGDEEIKELGEEFGKKH--DDVPQCVDPHELTREWTFAKIIMYYGEKKRKEVSEMFIKLYVDFWRGVKRSLGDGNFPNLFKLVQIYIVQPHLSIECERGFSAQNIIKSKGHNKLPVPRLELLMWLSL 477
            LL    I +P + P ++  L +Y + E++EL + + K H  + +   +D  ++ +EW   K +          VS  +  L V+    +        +PN+ KL++I    P  SIECERGFS QN+IK+   N++    L L + +SL
Sbjct:    4 LLNSMQILNPNKWPKDKKILQNYRELELEELIKVYEKSHWPNYLNGIIDADKIRQEWNLFKEV----------VSSNYQNLDVNNLLPIIFDQHQEFYPNIIKLLEIIYSIPFSSIECERGFSKQNLIKTSHRNRINNDTLHLFLSISL 142          
BLAST of mRNA_H-elongata_contig93793.16812.1 vs. uniprot
Match: A0A817T446_9BILA (Hypothetical protein n=3 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817T446_9BILA)

HSP 1 Score: 66.6 bits (161), Expect = 7.550e-10
Identity = 53/164 (32.32%), Postives = 82/164 (50.00%), Query Frame = 1
Query:    1 LNQLDMRFDKMDLLEKCAI-FDPQRVPTEEGQLCD--YGDEEIKELGEEFGKKHDDVPQCVDPHELTREWTFAK--IIMYYGEKKRKEVSEMFIKLYVDFWRGVKRSLGDGNFPNLFK----LVQIYIVQPHLSIECERGFSAQNIIKSKGHNKLPVPRLELLM 465
            + QLD RF    L E  ++ FDPQ +     +L    YG  ++  L     KK+   P+  D + +  EW   K  II +           +F K ++    G+K++  D NF + +K    L+ IY++ P  S ECERGFSA N I++ G ++L +P L +LM
Sbjct:  314 IQQLDKRFKPSLLQESLSVLFDPQYLINNSKKLNSNHYGRSQLNFLR----KKYKMYPEF-DSNAVIHEWESMKQCIIEFINNSLSVGTESLFWKTFI----GIKQAT-DNNFVHQYKNILILLNIYLIAPTNSAECERGFSAINRIQTVGRSRLTIPTLNMLM 467          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig93793.16812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2Z6RJ54_9GLOM1.510e-1432.32Zinc finger protein 862-like n=1 Tax=Rhizophagus c... [more]
A0A015J8B3_RHIIW2.110e-1431.52Uncharacterized protein n=13 Tax=Rhizophagus irreg... [more]
UPI001C19C3537.810e-1430.30Hypothetical protein n=1 Tax=Rhizophagus irregular... [more]
UPI001C194A041.200e-1329.56Hypothetical protein n=1 Tax=Rhizophagus irregular... [more]
A0A2N1N0J6_9GLOM1.290e-1229.56DUF4371 domain-containing protein n=1 Tax=Rhizopha... [more]
A0A8H3LT90_9GLOM1.050e-1131.97Zinc finger protein 862-like n=1 Tax=Rhizophagus c... [more]
A0A8B6EWY7_MYTGA4.640e-1130.07Nuclear pore complex protein Nup188 n=1 Tax=Mytilu... [more]
A0A8B6H8G0_MYTGA1.630e-1030.07DUF4371 domain-containing protein n=2 Tax=Mytilus ... [more]
A0A8H3XKI6_GIGMA4.900e-1029.53Zinc finger protein n=1 Tax=Gigaspora margarita Ta... [more]
A0A817T446_9BILA7.550e-1032.32Hypothetical protein n=3 Tax=Rotaria sp. Silwood2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig93793contigH-elongata_contig93793:592..1221 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score63.5
Seed ortholog evalue9.6e-08
Seed eggNOG ortholog400682.PAC_15711139
Preferred nameZNF862
EggNOG free text desc.ZnF_TTF
EggNOG OGs39XVR@33154,3BMWQ@33208,KOG1721@1,KOG1721@2759
COG Functional cat.S
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size477
Cds size462
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig93793.16812.1prot_H-elongata_contig93793.16812.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig93793 607..1221 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931334.059104-UTR-H-elongata_contig93793:591..6061622931334.059104-UTR-H-elongata_contig93793:591..606Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig93793 592..606 +
1691679794.1971047-UTR-H-elongata_contig93793:591..6061691679794.1971047-UTR-H-elongata_contig93793:591..606Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig93793 592..606 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931334.076385-CDS-H-elongata_contig93793:606..8191622931334.076385-CDS-H-elongata_contig93793:606..819Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93793 607..819 +
1691679794.2116308-CDS-H-elongata_contig93793:606..8191691679794.2116308-CDS-H-elongata_contig93793:606..819Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93793 607..819 +
1622931334.0927777-CDS-H-elongata_contig93793:972..12211622931334.0927777-CDS-H-elongata_contig93793:972..1221Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93793 973..1221 +
1691679794.2209787-CDS-H-elongata_contig93793:972..12211691679794.2209787-CDS-H-elongata_contig93793:972..1221Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93793 973..1221 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig93793.16812.1

>prot_H-elongata_contig93793.16812.1 ID=prot_H-elongata_contig93793.16812.1|Name=mRNA_H-elongata_contig93793.16812.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=154bp
MRFDKMDLLEKCAIFDPQRVPTEEGQLCDYGDEEIKELGEEFGKKHDDVP
QCVDPHELTREWTFAKIIMYYGEKKRKEVSEMFIKLYVDFWRGVKRSLGD
GNFPNLFKLVQIYIVQPHLSIECERGFSAQNIIKSKGHNKLPVPRLELLM
WLSL
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mRNA from alignment at H-elongata_contig93793:592..1221+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig93793.16812.1 ID=mRNA_H-elongata_contig93793.16812.1|Name=mRNA_H-elongata_contig93793.16812.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=630bp|location=Sequence derived from alignment at H-elongata_contig93793:592..1221+ (Himanthalia elongata Himel1 dioecious)
TTGAACCAACTCGACATGCGGTTCGACAAGATGGACCTGTTGGAGAAGTG TGCGATTTTCGACCCGCAGCGGGTTCCCACCGAAGAAGGACAACTCTGCG ACTACGGAGATGAGGAGATCAAGGAGTTGGGGGAGGAGTTCGGGAAGAAA CACGATGACGTCCCGCAGTGCGTTGACCCGCACGAGTTAACACGCGAGTG GACTTTCGCCAAGATCATCATGTACTATGTAAGGCGGAGACCTGGAACCT CCAACAAGATGGCGTCTCTCGAAGTAGCCGCTGCTACAGCTAATGCCGAG GCAGACAGTGAAGACACGTCGAACTGCGAAGCTGGCGGGGAGAAGGAAGT GGATCCAAAAGAGGGACGGAAGTTGAACAAGGGAGAGAAGAAACGCAAAG AAGTAAGCGAGATGTTCATCAAGCTGTATGTTGATTTCTGGAGGGGGGTC AAGAGGTCGTTGGGCGATGGTAACTTCCCAAACCTATTCAAGCTGGTGCA GATATACATCGTGCAGCCGCACTTATCTATCGAGTGCGAGCGTGGATTTT CGGCGCAGAACATAATCAAAAGTAAAGGTCACAACAAGCTGCCGGTGCCA CGCCTTGAGCTCTTGATGTGGCTTTCTTTG
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Coding sequence (CDS) from alignment at H-elongata_contig93793:592..1221+

>mRNA_H-elongata_contig93793.16812.1 ID=mRNA_H-elongata_contig93793.16812.1|Name=mRNA_H-elongata_contig93793.16812.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=924bp|location=Sequence derived from alignment at H-elongata_contig93793:592..1221+ (Himanthalia elongata Himel1 dioecious)
ATGCGGTTCGACAAGATGGACCTGTTGGAGAAGTGTGCGATTTTCGACCC
GCAGCGGGTTCCCACCGAAGAAGGACAACTCTGCGACTACGGAGATGAGG
AGATCAAGGAGTTGGGGGAGGAGTTCGGGAAGAAACACGATGACGTCCCG
CAGTGCGTTGACCCGCACGAGTTAACACGCGAGTGGACTTTCGCCAAGAT
CATCATGTACTATATGCGGTTCGACAAGATGGACCTGTTGGAGAAGTGTG
CGATTTTCGACCCGCAGCGGGTTCCCACCGAAGAAGGACAACTCTGCGAC
TACGGAGATGAGGAGATCAAGGAGTTGGGGGAGGAGTTCGGGAAGAAACA
CGATGACGTCCCGCAGTGCGTTGACCCGCACGAGTTAACACGCGAGTGGA
CTTTCGCCAAGATCATCATGTACTATGGAGAGAAGAAACGCAAAGAAGTA
AGCGAGATGTTCATCAAGCTGTATGTTGATTTCTGGAGGGGGGTCAAGAG
GTCGTTGGGCGATGGTAACTTCCCAAACCTATTCAAGCTGGTGCAGATAT
ACATCGTGCAGCCGCACTTATCTATCGAGTGCGAGCGTGGATTTTCGGCG
CAGAACATAATCAAAAGTAAAGGTCACAACAAGCTGCCGGTGCCACGCCT
TGAGCTCTTGATGTGGCTTTCTTTGGGAGAGAAGAAACGCAAAGAAGTAA
GCGAGATGTTCATCAAGCTGTATGTTGATTTCTGGAGGGGGGTCAAGAGG
TCGTTGGGCGATGGTAACTTCCCAAACCTATTCAAGCTGGTGCAGATATA
CATCGTGCAGCCGCACTTATCTATCGAGTGCGAGCGTGGATTTTCGGCGC
AGAACATAATCAAAAGTAAAGGTCACAACAAGCTGCCGGTGCCACGCCTT
GAGCTCTTGATGTGGCTTTCTTTG
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