mRNA_H-elongata_contig93793.16812.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig93793.16812.1 vs. uniprot
Match: A0A2Z6RJ54_9GLOM (Zinc finger protein 862-like n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6RJ54_9GLOM) HSP 1 Score: 78.2 bits (191), Expect = 1.510e-14 Identity = 53/164 (32.32%), Postives = 81/164 (49.39%), Query Frame = 1
Query: 1 LNQLDMRFDKMDLLEKCAIFDPQRVPTEEGQLCDYGDEEIKELGE--EFGKKHDDVPQC---VDPHELTREWTFAKIIMYYGEKKRKEVSEMFIKLYVDFWRGVKRSLGDGNFPNLFKLVQIYIVQPHLSIECERGFSAQNIIKSKGHNKLPVPRLELLMWLSL 477
L++L RF L I +P+ P L +GD+E++ L E E HD+V QC D ++ +EW K+++ K++ + + L D+ + F N+ KL+Q+ P S+ECERGFS QN IK+K N L L+ LM +SL
Sbjct: 70 LSELQQRFPNRSLFTSMKILNPREWPKNSQDLLFFGDDELENLLEYYEHPNIHDNV-QCSPLFDVNKCRQEWAGFKLVIS-NNLSSKDIDIILLLLIQDY---------NDTFLNIIKLIQLIYCIPFSSVECERGFSRQNQIKTKNRNSLTTDTLDRLMRISL 222
BLAST of mRNA_H-elongata_contig93793.16812.1 vs. uniprot
Match: A0A015J8B3_RHIIW (Uncharacterized protein n=13 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A015J8B3_RHIIW) HSP 1 Score: 79.7 bits (195), Expect = 2.110e-14 Identity = 52/165 (31.52%), Postives = 82/165 (49.70%), Query Frame = 1
Query: 1 LNQLDMRFDKMDLLEKCAIFDPQRVPTEEGQLCDYGDEEIKELGE--EFGKKHDDV--PQCVDPHELTREWTFAKIIMY--YGEKKRKEVSEMFIKLYVDFWRGVKRSLGDGNFPNLFKLVQIYIVQPHLSIECERGFSAQNIIKSKGHNKLPVPRLELLMWLSL 477
+N+L RF L I +P+ P E +L +GD E++ + + E H+++ P D ++ EW K+I+ + + + + I+ Y+D FPN+ KL+QI P S+ECERGFS QN IK+K N L L++LM +SL
Sbjct: 443 VNELQQRFPTRQLFTSMKILNPREWPKESQELLWFGDNELENILKYYECPNFHNNIQLPAIFDINKCREEWARFKMIITNNFASNDIEVILPLLIEDYIDV------------FPNIIKLIQIAYCIPFSSVECERGFSRQNKIKTKDRNSLATNTLDMLMCISL 595
BLAST of mRNA_H-elongata_contig93793.16812.1 vs. uniprot
Match: UPI001C19C353 (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C19C353) HSP 1 Score: 78.2 bits (191), Expect = 7.810e-14 Identity = 50/165 (30.30%), Postives = 80/165 (48.48%), Query Frame = 1
Query: 1 LNQLDMRFDKMDLLEKCAIFDPQRVPTEEGQLCDYGDEEIKELGEEFG----KKHDDVPQCVDPHELTREWTFAKIIMY--YGEKKRKEVSEMFIKLYVDFWRGVKRSLGDGNFPNLFKLVQIYIVQPHLSIECERGFSAQNIIKSKGHNKLPVPRLELLMWLSL 477
+N+L RF L I +P+ P E +L +GD E++ + + + + +P D ++ EW K+I+ + + + + I+ Y+D FPN+ KL+QI P S+ECERGFS QN IK+K N L L++LM +SL
Sbjct: 513 VNELQQRFPTRQLFTSMKILNPREWPKESQELLWFGDNELENILKYYECPNFYNNIQLPAIFDINKCREEWARFKMIITNNFASNDIEVILPLLIEDYIDV------------FPNIIKLIQIAYCIPFSSVECERGFSRQNKIKTKDRNSLATNTLDMLMCISL 665
BLAST of mRNA_H-elongata_contig93793.16812.1 vs. uniprot
Match: UPI001C194A04 (Hypothetical protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=UPI001C194A04) HSP 1 Score: 74.3 bits (181), Expect = 1.200e-13 Identity = 47/159 (29.56%), Postives = 75/159 (47.17%), Query Frame = 1
Query: 1 LNQLDMRFDKMDLLEKCAIFDPQRVPTEEGQLCDYGDEEIKELGEEFGKKHDDVPQCVDPHELTREWTFAKIIMYYGEKKRKEVSEMFIKLYVDFWRGVKRSLGDGNFPNLFKLVQIYIVQPHLSIECERGFSAQNIIKSKGHNKLPVPRLELLMWLSL 477
++++ RF LL IFD P +L Y ++E+ L E +GK+ Q + + + EW K I+Y K E+ + KL+ ++ FPN+ +L+ I P S++CERGF QN+IK+ N L + L LM + L
Sbjct: 9 ISEIQERFPDRPLLNSMKIFDHTNWPNNREELTSYDEKELNILAEFYGKE-----QIIQVNNICEEWFGYKAIIYVNYKNI-EIELLIPKLFEFYY---------DTFPNIIQLLGIVYSIPFSSVDCERGFLKQNLIKTDLQNSLNIETLHFLMMVGL 152
BLAST of mRNA_H-elongata_contig93793.16812.1 vs. uniprot
Match: A0A2N1N0J6_9GLOM (DUF4371 domain-containing protein n=1 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2N1N0J6_9GLOM) HSP 1 Score: 74.3 bits (181), Expect = 1.290e-12 Identity = 47/159 (29.56%), Postives = 75/159 (47.17%), Query Frame = 1
Query: 1 LNQLDMRFDKMDLLEKCAIFDPQRVPTEEGQLCDYGDEEIKELGEEFGKKHDDVPQCVDPHELTREWTFAKIIMYYGEKKRKEVSEMFIKLYVDFWRGVKRSLGDGNFPNLFKLVQIYIVQPHLSIECERGFSAQNIIKSKGHNKLPVPRLELLMWLSL 477
++++ RF LL IFD P +L Y ++E+ L E +GK+ Q + + + EW K I+Y K E+ + KL+ ++ FPN+ +L+ I P S++CERGF QN+IK+ N L + L LM + L
Sbjct: 232 ISEIQERFPDRPLLNSMKIFDHTNWPNNREELTSYDEKELNILAEFYGKE-----QIIQVNNICEEWFGYKAIIYVNYKNI-EIELLIPKLFEFYY---------DTFPNIIQLLGIVYSIPFSSVDCERGFLKQNLIKTDLQNSLNIETLHFLMMVGL 375
BLAST of mRNA_H-elongata_contig93793.16812.1 vs. uniprot
Match: A0A8H3LT90_9GLOM (Zinc finger protein 862-like n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A8H3LT90_9GLOM) HSP 1 Score: 68.9 bits (167), Expect = 1.050e-11 Identity = 47/147 (31.97%), Postives = 74/147 (50.34%), Query Frame = 1
Query: 55 IFDPQRVPTEEGQLCDYGDEEIKELGE--EFGKKHDDV--PQCVDPHELTREWTFAKIIMY--YGEKKRKEVSEMFIKLYVDFWRGVKRSLGDGNFPNLFKLVQIYIVQPHLSIECERGFSAQNIIKSKGHNKLPVPRLELLMWLSL 477
I +P+ P E +L +GD E+ + + E H+++ P D ++ EW K+I+ + + + + I+ Y+D FPN+ KL+QI P S+ECERGFS QN IK+K N L L++LM +SL
Sbjct: 3 ILNPREWPKESQELLWFGDNELGNVLKYYECPNFHNNIQLPAIFDINKCREEWARFKMIITNNFASNDIEVILPLLIQDYIDV------------FPNIIKLIQIVYCIPFSSVECERGFSRQNKIKTKDRNSLATNTLDMLMRVSL 137
BLAST of mRNA_H-elongata_contig93793.16812.1 vs. uniprot
Match: A0A8B6EWY7_MYTGA (Nuclear pore complex protein Nup188 n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6EWY7_MYTGA) HSP 1 Score: 67.8 bits (164), Expect = 4.640e-11 Identity = 46/153 (30.07%), Postives = 72/153 (47.06%), Query Frame = 1
Query: 19 RFDKMDLLEKCAIFDPQRVPTEEGQLCDYGDEEIKELGEEFGKKHDDVPQCVDPHELTREWTFAKIIMYYGEKKRKEVSEMFIKLYVDFWRGVKRSLGDGNFPNLFKLVQIYIVQPHLSIECERGFSAQNIIKSKGHNKLPVPRLELLMWLSL 477
RF + E ++F+P P+ L YG+++++ LG+ + ++ EL EW K +++ K F L + R FPN L++I + P S+ECERGFS QNIIK+K L + L+ LM +SL
Sbjct: 17 RFPNNNNFEAFSVFEPSNFPSSVADLPRYGEQQLECLGDHYN--------LINQEELQVEWGILKYLIFNNYK-----GLSFADLLTAI---ISRK---DQFPNAISLMEISRILPVSSVECERGFSRQNIIKTKLRCSLGIDALDQLMRISL 150
BLAST of mRNA_H-elongata_contig93793.16812.1 vs. uniprot
Match: A0A8B6H8G0_MYTGA (DUF4371 domain-containing protein n=2 Tax=Mytilus TaxID=6548 RepID=A0A8B6H8G0_MYTGA) HSP 1 Score: 68.6 bits (166), Expect = 1.630e-10 Identity = 46/153 (30.07%), Postives = 72/153 (47.06%), Query Frame = 1
Query: 19 RFDKMDLLEKCAIFDPQRVPTEEGQLCDYGDEEIKELGEEFGKKHDDVPQCVDPHELTREWTFAKIIMYYGEKKRKEVSEMFIKLYVDFWRGVKRSLGDGNFPNLFKLVQIYIVQPHLSIECERGFSAQNIIKSKGHNKLPVPRLELLMWLSL 477
RF + E ++F+P P+ L YG+++++ LG+ + ++ EL EW K +++ K F L + R FPN L++I + P S+ECERGFS QNIIK+K L + L+ LM +SL
Sbjct: 486 RFPDNKIFEAFSVFEPSNFPSSVADLPRYGEQQLECLGDHYN--------LINQEELQVEWGILKYLIFNNYK-----GLSFADLLTAI---ISRK---DQFPNAISLMEISRILPVSSVECERGFSRQNIIKTKLRCSLGIDSLDQLMRISL 619
BLAST of mRNA_H-elongata_contig93793.16812.1 vs. uniprot
Match: A0A8H3XKI6_GIGMA (Zinc finger protein n=1 Tax=Gigaspora margarita TaxID=4874 RepID=A0A8H3XKI6_GIGMA) HSP 1 Score: 64.7 bits (156), Expect = 4.900e-10 Identity = 44/149 (29.53%), Postives = 74/149 (49.66%), Query Frame = 1
Query: 37 LLEKCAIFDPQRVPTEEGQLCDYGDEEIKELGEEFGKKH--DDVPQCVDPHELTREWTFAKIIMYYGEKKRKEVSEMFIKLYVDFWRGVKRSLGDGNFPNLFKLVQIYIVQPHLSIECERGFSAQNIIKSKGHNKLPVPRLELLMWLSL 477
LL I +P + P ++ L +Y + E++EL + + K H + + +D ++ +EW K + VS + L V+ + +PN+ KL++I P SIECERGFS QN+IK+ N++ L L + +SL
Sbjct: 4 LLNSMQILNPNKWPKDKKILQNYRELELEELIKVYEKSHWPNYLNGIIDADKIRQEWNLFKEV----------VSSNYQNLDVNNLLPIIFDQHQEFYPNIIKLLEIIYSIPFSSIECERGFSKQNLIKTSHRNRINNDTLHLFLSISL 142
BLAST of mRNA_H-elongata_contig93793.16812.1 vs. uniprot
Match: A0A817T446_9BILA (Hypothetical protein n=3 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A817T446_9BILA) HSP 1 Score: 66.6 bits (161), Expect = 7.550e-10 Identity = 53/164 (32.32%), Postives = 82/164 (50.00%), Query Frame = 1
Query: 1 LNQLDMRFDKMDLLEKCAI-FDPQRVPTEEGQLCD--YGDEEIKELGEEFGKKHDDVPQCVDPHELTREWTFAK--IIMYYGEKKRKEVSEMFIKLYVDFWRGVKRSLGDGNFPNLFK----LVQIYIVQPHLSIECERGFSAQNIIKSKGHNKLPVPRLELLM 465
+ QLD RF L E ++ FDPQ + +L YG ++ L KK+ P+ D + + EW K II + +F K ++ G+K++ D NF + +K L+ IY++ P S ECERGFSA N I++ G ++L +P L +LM
Sbjct: 314 IQQLDKRFKPSLLQESLSVLFDPQYLINNSKKLNSNHYGRSQLNFLR----KKYKMYPEF-DSNAVIHEWESMKQCIIEFINNSLSVGTESLFWKTFI----GIKQAT-DNNFVHQYKNILILLNIYLIAPTNSAECERGFSAINRIQTVGRSRLTIPTLNMLM 467 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig93793.16812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig93793.16812.1 >prot_H-elongata_contig93793.16812.1 ID=prot_H-elongata_contig93793.16812.1|Name=mRNA_H-elongata_contig93793.16812.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=154bp MRFDKMDLLEKCAIFDPQRVPTEEGQLCDYGDEEIKELGEEFGKKHDDVPback to top mRNA from alignment at H-elongata_contig93793:592..1221+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig93793.16812.1 ID=mRNA_H-elongata_contig93793.16812.1|Name=mRNA_H-elongata_contig93793.16812.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=630bp|location=Sequence derived from alignment at H-elongata_contig93793:592..1221+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig93793:592..1221+ >mRNA_H-elongata_contig93793.16812.1 ID=mRNA_H-elongata_contig93793.16812.1|Name=mRNA_H-elongata_contig93793.16812.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=924bp|location=Sequence derived from alignment at H-elongata_contig93793:592..1221+ (Himanthalia elongata Himel1 dioecious)back to top |