mRNA_H-elongata_contig93680.16801.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig93680.16801.1
Unique NamemRNA_H-elongata_contig93680.16801.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig93680.16801.1 vs. uniprot
Match: A0A2S1PRW8_FUCSE (Putative argonaute n=1 Tax=Fucus serratus TaxID=87148 RepID=A0A2S1PRW8_FUCSE)

HSP 1 Score: 234 bits (597), Expect = 1.690e-69
Identity = 119/143 (83.22%), Postives = 127/143 (88.81%), Query Frame = 1
Query:    1 AQCVLVKHVLTAKIQYMANLCLKINAKLGGRNAIPAKKLPFVQDAPTIVFGADVNHPGAGNVSTPSIAAVVASMDRWVARHGSCVAVQEHRKE----------SLLISFYRVNNSKPSRIIFFRDGVSEGQFREVLRYEVSVL 399
            +QCVL+KHV TAKIQY+ANLCLKINAKLGGRNA+P  KLPFVQDAPTIVFGADVNHPGAGNVS PSIAAVVASMDRWV+RHGSCVAVQEHRKE          +LLISFYRVNNSKPSRIIFFRDGVSEGQFREVLR+EV  +
Sbjct:  660 SQCVLLKHVQTAKIQYLANLCLKINAKLGGRNAVPKDKLPFVQDAPTIVFGADVNHPGAGNVSKPSIAAVVASMDRWVSRHGSCVAVQEHRKEVIQDLAAMVKNLLISFYRVNNSKPSRIIFFRDGVSEGQFREVLRFEVRAI 802          
BLAST of mRNA_H-elongata_contig93680.16801.1 vs. uniprot
Match: D7FQK3_ECTSI (Argonaute 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQK3_ECTSI)

HSP 1 Score: 233 bits (594), Expect = 4.150e-69
Identity = 118/143 (82.52%), Postives = 127/143 (88.81%), Query Frame = 1
Query:    1 AQCVLVKHVLTAKIQYMANLCLKINAKLGGRNAIPAKKLPFVQDAPTIVFGADVNHPGAGNVSTPSIAAVVASMDRWVARHGSCVAVQEHRKE----------SLLISFYRVNNSKPSRIIFFRDGVSEGQFREVLRYEVSVL 399
            +QCVL+KHV TAKIQY+ANLCLKINAKLGGRNA+P  KLPFVQDAPTIVFGADVNHPGAGNVS PSIAAVVASMDRWV+RHGSCVAVQEHRKE          +LLISFYRVNN+KP+RIIFFRDGVSEGQFREVLRYEV  +
Sbjct:  651 SQCVLLKHVHTAKIQYLANLCLKINAKLGGRNAVPRDKLPFVQDAPTIVFGADVNHPGAGNVSKPSIAAVVASMDRWVSRHGSCVAVQEHRKEVIQDLASMVKNLLISFYRVNNAKPARIIFFRDGVSEGQFREVLRYEVRAI 793          
BLAST of mRNA_H-elongata_contig93680.16801.1 vs. uniprot
Match: A0A1Y1YHC8_9FUNG (Piwi-domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YHC8_9FUNG)

HSP 1 Score: 148 bits (373), Expect = 9.250e-39
Identity = 78/143 (54.55%), Postives = 99/143 (69.23%), Query Frame = 1
Query:    4 QCVLVKHVLTAKIQYMANLCLKINAKLGGRNA-IPAKKLPFVQDAPTIVFGADVNHPGAGNVSTPSIAAVVASMDRWVARHGSCVAVQEHRKE----------SLLISFYRVNNSKPSRIIFFRDGVSEGQFREVLRYEVSVL 399
            QCV  KHV  A  QY AN+CLKINAKLGG N+ +P +++PF+ +APTIVFGADV HPG G  + PSIAAVVASMD  V+R+ SC+  Q  R E           LL++FY+    KP++I+F+RDGVSEGQF +VL  EV  +
Sbjct:  543 QCVQGKHVFKANKQYCANVCLKINAKLGGMNSYLPPEQIPFISNAPTIVFGADVTHPGPGENNKPSIAAVVASMDNKVSRYASCIRAQASRTEIIADLAAMVQELLVAFYKSCRQKPAQILFYRDGVSEGQFGQVLHAEVKAV 685          
BLAST of mRNA_H-elongata_contig93680.16801.1 vs. uniprot
Match: A0A024FT57_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FT57_9STRA)

HSP 1 Score: 148 bits (373), Expect = 9.740e-39
Identity = 76/143 (53.15%), Postives = 99/143 (69.23%), Query Frame = 1
Query:    1 AQCVLVKHVLTAKIQYMANLCLKINAKLGGRNAIPAKKLPFVQDAPTIVFGADVNHPGAGNVSTPSIAAVVASMDRWVARHGSCVAVQEHRKES----------LLISFYRVNNSKPSRIIFFRDGVSEGQFREVLRYEVSVL 399
            +QC+L KH+  A  QY+AN+ LK+NAKLGG+N++  + LP V +APTI+FGADV HPG    S PSIAAVVASMDR   +H + + VQ HR E           LL+ FY+    KPSRI+F+RDGVSEGQF+ VL +EV+ +
Sbjct:  604 SQCMLAKHIDKASPQYIANILLKVNAKLGGKNSVVREPLPKVSEAPTIIFGADVTHPGVTETSRPSIAAVVASMDRHCIKHAATIRVQGHRVEQIINLQEMVKELLVLFYKEARVKPSRILFYRDGVSEGQFQMVLNHEVTAI 746          
BLAST of mRNA_H-elongata_contig93680.16801.1 vs. uniprot
Match: F0X160_9STRA (Argonaute2 (AGO2) putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X160_9STRA)

HSP 1 Score: 144 bits (362), Expect = 2.980e-37
Identity = 75/143 (52.45%), Postives = 98/143 (68.53%), Query Frame = 1
Query:    1 AQCVLVKHVLTAKIQYMANLCLKINAKLGGRNAIPAKKLPFVQDAPTIVFGADVNHPGAGNVSTPSIAAVVASMDRWVARHGSCVAVQEHRKES----------LLISFYRVNNSKPSRIIFFRDGVSEGQFREVLRYEVSVL 399
            +QC+L KH+  A  QY+AN+ LK+N KLGG+NA+  + LP V +APTI+FGADV HPG    S PSIAAVVASMDR   +H + + VQ HR E           LL+ FY+    KP+RI+F+RDGVSEGQF+ VL +E+S +
Sbjct:  609 SQCMLWKHIDKASPQYIANILLKVNTKLGGKNAVVREPLPKVSEAPTIIFGADVTHPGLTERSRPSIAAVVASMDRHCIKHAATLRVQGHRVEQIINLQEMAKELLVLFYKEARVKPTRILFYRDGVSEGQFQMVLNHEISAI 751          
BLAST of mRNA_H-elongata_contig93680.16801.1 vs. uniprot
Match: A0A507C0V6_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507C0V6_9FUNG)

HSP 1 Score: 140 bits (354), Expect = 3.610e-36
Identity = 76/143 (53.15%), Postives = 94/143 (65.73%), Query Frame = 1
Query:    4 QCVLVKHVLTAKIQYMANLCLKINAKLGGRNA-IPAKKLPFVQDAPTIVFGADVNHPGAGNVSTPSIAAVVASMDRWVARHGSCVAVQEHRKE----------SLLISFYRVNNSKPSRIIFFRDGVSEGQFREVLRYEVSVL 399
            QCVL KHV  AK QY AN+CLKIN KLGG N+ +   +LPFV + PTI+FGADV HP  G+ S  SIAA+V SMD   +R+ + + VQ  R+E           LL +FY+   SKP R+I +RDGVSEGQF EVLR EV  +
Sbjct:  557 QCVLAKHVFAAKRQYCANVCLKINVKLGGMNSYLSNAQLPFVSERPTIIFGADVTHPAPGSTSNQSIAALVGSMDAQCSRYAAAIRVQRGRQEVIQDLSGMVVELLKTFYQTCGSKPDRVIMYRDGVSEGQFSEVLRNEVEAI 699          
BLAST of mRNA_H-elongata_contig93680.16801.1 vs. uniprot
Match: A0A507D171_9FUNG (Uncharacterized protein n=2 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507D171_9FUNG)

HSP 1 Score: 140 bits (352), Expect = 6.700e-36
Identity = 75/143 (52.45%), Postives = 94/143 (65.73%), Query Frame = 1
Query:    4 QCVLVKHVLTAKIQYMANLCLKINAKLGGRNA-IPAKKLPFVQDAPTIVFGADVNHPGAGNVSTPSIAAVVASMDRWVARHGSCVAVQEHRKE----------SLLISFYRVNNSKPSRIIFFRDGVSEGQFREVLRYEVSVL 399
            QCVL KHV  AK QY AN+CLKIN K+GG N+ +   +LPFV + PTI+FGADV HP  G+ S  SIAA+V SMD   +R+ + + VQ  R+E           LL +FY+   SKP RI+ +RDGVSEGQF EVLR EV  +
Sbjct:  557 QCVLAKHVFAAKRQYCANVCLKINVKMGGMNSYLSNAQLPFVSERPTIIFGADVTHPAPGSTSNQSIAALVGSMDSQCSRYAAAIRVQRGRQEVIQDLTGMVVELLKTFYQTCGSKPDRIVMYRDGVSEGQFSEVLRNEVEAI 699          
BLAST of mRNA_H-elongata_contig93680.16801.1 vs. uniprot
Match: A0A0L0HPF4_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HPF4_SPIPD)

HSP 1 Score: 139 bits (351), Expect = 8.910e-36
Identity = 74/143 (51.75%), Postives = 97/143 (67.83%), Query Frame = 1
Query:    4 QCVLVKHVLTAKIQYMANLCLKINAKLGGRNA-IPAKKLPFVQDAPTIVFGADVNHPGAGNVSTPSIAAVVASMDRWVARHGSCVAVQEHRKE----------SLLISFYRVNNSKPSRIIFFRDGVSEGQFREVLRYEVSVL 399
            QC+  KHV  AK QY AN+CLKIN KLGG N  + + +LPFV + PTI+FGADV HP  G+ + PSIAA+V SMD   +R+ + + VQ+ R+E           LL +FY+   SKP RI+F+RDGVSEGQF EV+R EV+ +
Sbjct:  548 QCMQAKHVFAAKKQYCANICLKINVKLGGMNCFLGSAQLPFVAERPTIIFGADVTHPAPGDHNKPSIAAIVGSMDAQCSRYAAAIRVQKGRQEIIKDLGGAVVELLRTFYQFCGSKPQRILFYRDGVSEGQFGEVVREEVAAI 690          
BLAST of mRNA_H-elongata_contig93680.16801.1 vs. uniprot
Match: A0A1Y1YUR7_9FUNG (Piwi-domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YUR7_9FUNG)

HSP 1 Score: 139 bits (349), Expect = 1.640e-35
Identity = 73/143 (51.05%), Postives = 95/143 (66.43%), Query Frame = 1
Query:    4 QCVLVKHVLTAKIQYMANLCLKINAKLGGRNA-IPAKKLPFVQDAPTIVFGADVNHPGAGNVSTPSIAAVVASMDRWVARHGSCVAVQEHRKE----------SLLISFYRVNNSKPSRIIFFRDGVSEGQFREVLRYEVSVL 399
            QC+  KHV     Q  AN+CLK+N KLGG N+ +   ++PF+ D PTIVFGADV HPG G  + PSIAAVVASMDR V+++ SCV VQ  R E           LL++FY  +  KP++I+F+RDGVSEGQF  VL  E++ +
Sbjct:  543 QCIQGKHVFKPNKQLCANVCLKMNVKLGGVNSYLLPDQIPFISDIPTIVFGADVTHPGPGETTRPSIAAVVASMDRKVSKYASCVRVQAARTEIIADLAGMVKELLLAFYNTSRQKPAQILFYRDGVSEGQFAHVLHSEIAAV 685          
BLAST of mRNA_H-elongata_contig93680.16801.1 vs. uniprot
Match: A0A8H7BXS2_9FUNG (Eukaryotic translation initiation factor 2C, 2 n=1 Tax=Apophysomyces ossiformis TaxID=679940 RepID=A0A8H7BXS2_9FUNG)

HSP 1 Score: 138 bits (348), Expect = 2.230e-35
Identity = 73/143 (51.05%), Postives = 95/143 (66.43%), Query Frame = 1
Query:    4 QCVLVKHVLTAKIQYMANLCLKINAKLGGRNAI-PAKKLPFVQDAPTIVFGADVNHPGAGNVSTPSIAAVVASMDRWVARHGSCVAVQEHRKE----------SLLISFYRVNNSKPSRIIFFRDGVSEGQFREVLRYEVSVL 399
            QC+  KHV  AK QY AN+CLK+N KLGG N + P  ++PF+ + PTIVFGADV HPG G+ + PSIAA+VASMD  VA++ S + VQ HR E           LL  FY+    KP+ I+F+RDGVSEGQF+ V + E+  +
Sbjct:  525 QCLQYKHVQQAKHQYCANVCLKVNLKLGGSNILLPPAQIPFITEKPTIVFGADVTHPGPGDTTRPSIAALVASMDSRVAKYASAIRVQAHRTEIIADLANMVKELLKIFYQSCGQKPAHILFYRDGVSEGQFKIVQKAEIDAI 667          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig93680.16801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2S1PRW8_FUCSE1.690e-6983.22Putative argonaute n=1 Tax=Fucus serratus TaxID=87... [more]
D7FQK3_ECTSI4.150e-6982.52Argonaute 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7... [more]
A0A1Y1YHC8_9FUNG9.250e-3954.55Piwi-domain-containing protein n=1 Tax=Basidiobolu... [more]
A0A024FT57_9STRA9.740e-3953.15Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
F0X160_9STRA2.980e-3752.45Argonaute2 (AGO2) putative n=1 Tax=Albugo laibachi... [more]
A0A507C0V6_9FUNG3.610e-3653.15Uncharacterized protein n=1 Tax=Synchytrium microb... [more]
A0A507D171_9FUNG6.700e-3652.45Uncharacterized protein n=2 Tax=Synchytrium endobi... [more]
A0A0L0HPF4_SPIPD8.910e-3651.75Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
A0A1Y1YUR7_9FUNG1.640e-3551.05Piwi-domain-containing protein n=1 Tax=Basidiobolu... [more]
A0A8H7BXS2_9FUNG2.230e-3551.05Eukaryotic translation initiation factor 2C, 2 n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig93680contigH-elongata_contig93680:101..1148 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score234.6
Seed ortholog evalue2.7e-59
Seed eggNOG ortholog2880.D7FQK3
KEGG koko:K11593
EggNOG free text desc.gene silencing by RNA
EggNOG OGsKOG1041@1,KOG1041@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03036
Hectar predicted targeting categoryother localisation
Exons3
Model size399
Cds size399
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig93680.16801.1prot_H-elongata_contig93680.16801.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig93680 101..1148 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931332.8423839-CDS-H-elongata_contig93680:100..2201622931332.8423839-CDS-H-elongata_contig93680:100..220Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93680 101..220 -
1691679793.5773892-CDS-H-elongata_contig93680:100..2201691679793.5773892-CDS-H-elongata_contig93680:100..220Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93680 101..220 -
1622931332.8651245-CDS-H-elongata_contig93680:488..6351622931332.8651245-CDS-H-elongata_contig93680:488..635Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93680 489..635 -
1691679793.588633-CDS-H-elongata_contig93680:488..6351691679793.588633-CDS-H-elongata_contig93680:488..635Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93680 489..635 -
1622931332.8814507-CDS-H-elongata_contig93680:1016..11481622931332.8814507-CDS-H-elongata_contig93680:1016..1148Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93680 1017..1148 -
1691679793.5998187-CDS-H-elongata_contig93680:1016..11481691679793.5998187-CDS-H-elongata_contig93680:1016..1148Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig93680 1017..1148 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig93680.16801.1

>prot_H-elongata_contig93680.16801.1 ID=prot_H-elongata_contig93680.16801.1|Name=mRNA_H-elongata_contig93680.16801.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
AQCVLVKHVLTAKIQYMANLCLKINAKLGGRNAIPAKKLPFVQDAPTIVF
GADVNHPGAGNVSTPSIAAVVASMDRWVARHGSCVAVQEHRKESLLISFY
RVNNSKPSRIIFFRDGVSEGQFREVLRYEVSVL
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mRNA from alignment at H-elongata_contig93680:101..1148-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig93680.16801.1 ID=mRNA_H-elongata_contig93680.16801.1|Name=mRNA_H-elongata_contig93680.16801.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1048bp|location=Sequence derived from alignment at H-elongata_contig93680:101..1148- (Himanthalia elongata Himel1 dioecious)
GCCCAGTGTGTTCTTGTGAAGCATGTCCTAACGGCAAAGATCCAATACAT GGCGAACCTTTGCTTGAAGATCAACGCAAAGCTAGGCGGCCGTAACGCGA TCCCCGCGAAGAAGCTCCCCTTCGTCCAGGACGTGAGTTGCCTGCCCCCG CATTCCCTAAGGAGGACGTATTAGGCATTGTGTTAATGGTTAAAAAAAGG TTGATGGGCATCCCCTATCATATCTCGCTGACGCGTGACGGTGGTGATAC GTCCCGTCCGTTCGATATGTGATATGTATGTTTTATGTAGTGTAGTGTGA ACGTGTTGCCACTGACTCATGGATTGATCCATTGATCGACCTCCCCGGGA AGCGCTCTTCTAGTCTAGTCCGTCATCATATCATGATCCTTTAGTCGTTA ATGGATTCTCGGACAGGCCGATACAGCATGTACCACGAAATTAGGGCTCT GCCCTGCACCAGACTTCTCCCAACCTACCCTTTTCCCCTTTTTTGTGTGT GTTTTTTTGTCAGGCTCCGACGATTGTTTTCGGGGCTGACGTCAATCACC CCGGTGCGGGCAATGTTTCGACGCCGTCGATCGCCGCTGTGGTCGCAAGC ATGGACAGATGGGTGGCACGCCACGGATCATGCGTGGCGGTTCAAGAACA CAGGAAGGAAGTTATCCAGGTAAAAGTCCAGACGTTGTTGAACTCCTTAG TGGTAAACCTCGAATCTCGAATATATAAGGAAGTTCTTATCATGTTTCTT TGTAAACTATAGCGAGTTCGGTGTAGTCTTTGATCGAGATCCCCGACGAA CGCCTCTATATTGTCATATTTTGAAAGAGCATGTCTGCGGCCTGGTCACT GCCCTTTGCCTAACTCCCACCCTCGACACGGCCGACGGTTTGGCTGCTGC TGATCAGGACTTGGCCGCCATGGTTAAGAGTCTCCTGATTTCATTCTATC GGGTGAATAACTCCAAACCCTCCCGCATCATATTCTTCCGCGACGGCGTC AGCGAGGGTCAGTTCAGGGAGGTACTCCGCTACGAGGTGAGTGTGTTG
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Coding sequence (CDS) from alignment at H-elongata_contig93680:101..1148-

>mRNA_H-elongata_contig93680.16801.1 ID=mRNA_H-elongata_contig93680.16801.1|Name=mRNA_H-elongata_contig93680.16801.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig93680:101..1148- (Himanthalia elongata Himel1 dioecious)
GCCCAGTGTGTTCTTGTGAAGCATGTCCTAACGGCAAAGATCCAATACAT
GGCGAACCTTTGCTTGAAGATCAACGCAAAGCTAGGCGGCCGTAACGCGA
TCCCCGCGAAGAAGCTCCCCTTCGTCCAGGACGCCCAGTGTGTTCTTGTG
AAGCATGTCCTAACGGCAAAGATCCAATACATGGCGAACCTTTGCTTGAA
GATCAACGCAAAGCTAGGCGGCCGTAACGCGATCCCCGCGAAGAAGCTCC
CCTTCGTCCAGGACGCTCCGACGATTGTTTTCGGGGCTGACGTCAATCAC
CCCGGTGCGGGCAATGTTTCGACGCCGTCGATCGCCGCTGTGGTCGCAAG
CATGGACAGATGGGTGGCACGCCACGGATCATGCGTGGCGGTTCAAGAAC
ACAGGAAGGAAGCTCCGACGATTGTTTTCGGGGCTGACGTCAATCACCCC
GGTGCGGGCAATGTTTCGACGCCGTCGATCGCCGCTGTGGTCGCAAGCAT
GGACAGATGGGTGGCACGCCACGGATCATGCGTGGCGGTTCAAGAACACA
GGAAGGAAAGTCTCCTGATTTCATTCTATCGGGTGAATAACTCCAAACCC
TCCCGCATCATATTCTTCCGCGACGGCGTCAGCGAGGGTCAGTTCAGGGA
GGTACTCCGCTACGAGGTGAGTGTGTTGAGTCTCCTGATTTCATTCTATC
GGGTGAATAACTCCAAACCCTCCCGCATCATATTCTTCCGCGACGGCGTC
AGCGAGGGTCAGTTCAGGGAGGTACTCCGCTACGAGGTGAGTGTGTTG
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