mRNA_H-elongata_contig9176.16632.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig9176.16632.1
Unique NamemRNA_H-elongata_contig9176.16632.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig9176.16632.1 vs. uniprot
Match: D7G4R5_ECTSI (DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4R5_ECTSI)

HSP 1 Score: 353 bits (907), Expect = 3.170e-118
Identity = 184/260 (70.77%), Postives = 201/260 (77.31%), Query Frame = 1
Query:    1 WVDLCVPPEELRPAFSLTIGQCFNWRQAAANCWVGVLGRDVIAIRQTPRTTLFRSLSMSLTKNSEKEDVKRSASAKVAAKLRDYFFLSEPLMPLYQRWSEGDMRMAAVATALPGVRVVRQDPVECIFSFICSSNNNIPRITLMLDKLRHAYGELLLRVGEEGLAATDLLGNDSILIPELEDWTRKPLEFHSFPTVEALAQHATEANLREMGFGYRAKYIVESAKHMIDGGGAEWALRMRATGRDDVRDQLVTLKGVGPKV 780
            W DLCVPPEELRP  +LT+GQCFNWRQA A+CWVGVLGR+VIAIRQTP TTLFRSLS   T    K       +A +A  LR+YFFL  PL PLYQRWSEGD RMAAVA ++ GVRVVRQDPVECIFSFICSSNNNIPRIT ML KLR  YG+LLL VG+ GLAAT  LGN    I E E+W + PLE HSFPTV+ALA  ATEA+LR MGFGYRAKYIV+SAK M   GGA WAL MR   RD+VR QLVTL GVGPKV
Sbjct:   38 WHDLCVPPEELRPDSTLTVGQCFNWRQAGADCWVGVLGREVIAIRQTPCTTLFRSLSAVTTDGDAK------VAAALATTLREYFFLRTPLAPLYQRWSEGDPRMAAVACSISGVRVVRQDPVECIFSFICSSNNNIPRITGMLGKLRRTYGDLLLNVGKGGLAATGALGN----ITECEEWAKLPLELHSFPTVDALATRATEADLRAMGFGYRAKYIVDSAKLMHSNGGAGWALDMRNKDRDEVRSQLVTLCGVGPKV 287          
BLAST of mRNA_H-elongata_contig9176.16632.1 vs. uniprot
Match: A0A4D9CXL3_9STRA (DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CXL3_9STRA)

HSP 1 Score: 213 bits (542), Expect = 2.760e-60
Identity = 124/291 (42.61%), Postives = 160/291 (54.98%), Query Frame = 1
Query:    1 WVDLCVPPEELRPAFSLTIGQCFNWRQAA---------------------------ANC---WVGVLGRDVIAIRQTPRTTLFRSLSMSLTKNSEKEDVKRSASAKVA-AKLRDYFFLSEPLMPLYQRWSEGDMRMAAVATALPGVRVVRQDPVECIFSFICSSNNNIPRITLMLDKLRHAYGELLLRVGEEGLAATDLLGNDSILIPELEDWTRKPLEFHSFPTVEALAQHATEANLREMGFGYRAKYIVESAKHMIDGGGAEWALRMRATGRDDVRDQLVTLKGVGPKV 780
            W+DL VPP ELRP FSLT+GQCFNWR+                               C   W+GVL R V+ IRQTP TTL R +  S+ +   +   +     KV  A+L+DYF ++  L PLY  W+EGD+RM  VA  LPGVRV+RQDPVEC+FSFICSSNNNIPRI LMLD+LR  YGE L +                               +H+FP + +LA  A+E  LR +G GYRA++I  +A  ++D GG EW + +R   R++ +  L T  GVG KV
Sbjct:   24 WMDLDVPPHELRPEFSLTMGQCFNWRRQGLETQAKVAVGEGEEGGREXXXXXXXXGGGCDKVWIGVLDRHVLEIRQTPTTTLVRRVGASVDEGRVEGGREGEVEDKVLMARLQDYFQVNTSLRPLYHCWAEGDVRMKTVAEHLPGVRVLRQDPVECLFSFICSSNNNIPRIALMLDRLRKTYGEPLGK------------------------------GYHAFPPLSSLAS-ASEEELRGLGLGYRARFIKLTASQLLDLGGREWLMSLREKSREEAQQALCTFPGVGRKV 283          
BLAST of mRNA_H-elongata_contig9176.16632.1 vs. uniprot
Match: B5YNS8_THAPS (DNA-(apurinic or apyrimidinic site) lyase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YNS8_THAPS)

HSP 1 Score: 197 bits (502), Expect = 6.240e-59
Identity = 114/265 (43.02%), Postives = 155/265 (58.49%), Query Frame = 1
Query:    1 WVDLCVPPEELRPAFSLTIGQCFNWRQAA-ANCWVGVLGRDVIAIRQTPRTTLFRSLSMSLTKNSEKEDVKRSASAKVAAKLRDYFFLSEPLMPLYQRWSEGDMRMAAVATALPGVRVVRQDPVECIFSFICSSNNNIPRITLMLDKLRHAYGELLLRVGE---EGLAATDLLGNDSILIPELEDWTRKPLEFHSFPTVEALAQHATEANLREMGFGYRAKYIVESAKHMIDGGGAEWALRMRA-TGRDDVRDQLVTLKGVGPKV 780
            WVDL V PEELRP+ +LT GQCFNW     A  W+G LG  V++I++TP TTLFR +      ++E               L+ YF L   L PLY+ WS+ D R++ +ATA+PGVR++RQ+PVEC+FSFICSSNNNIPRIT ML   R  YG  ++ V     EG+A                         ++FPT+E+L++ ATE  LR MG GYR+KYI E+   ++  GG E+ + +R+ T    V+D+L    G+G KV
Sbjct:    5 WVDLKVAPEELRPSSTLTNGQCFNWMSHHDAKEWIGPLGNRVLSIKETPTTTLFRIVHGPTEGSTEY--------------LQQYFRLETALSPLYKEWSKADDRLSKIATAIPGVRILRQEPVECMFSFICSSNNNIPRITKMLAAFREKYGTFMIDVPSQNGEGIA------------------------LYTFPTIESLSE-ATEDELRGMGLGYRSKYITETRDLLVKSGGEEYLIGLRSLTDAQVVQDELTKFSGIGRKV 230          
BLAST of mRNA_H-elongata_contig9176.16632.1 vs. uniprot
Match: A0A7S1CUH0_9STRA (DNA-(apurinic or apyrimidinic site) lyase (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1CUH0_9STRA)

HSP 1 Score: 198 bits (503), Expect = 2.110e-58
Identity = 120/283 (42.40%), Postives = 162/283 (57.24%), Query Frame = 1
Query:    1 WVDLCVPPEELRPAFSLTIGQCFNW---------------RQAAANC-----WVGVLGRDVIAIRQTPRTTLFRSLSMSLTKNSEKEDVKRSASAKVAAKLRDYFFLSEPLMPLYQRWSEGDMRMAAVATALPGVRVVRQDPVECIFSFICSSNNNIPRITLMLDKLRHAYGELLLRVGEEGLAATDLLGNDSILIPELEDWTRKPLEFHSFPTVEALAQHATEANLREMGFGYRAKYIVESAKHMIDGGGAEWALRMRATGRDD---VRDQLVTLKGVGPKV 780
            W+DL VPP+ELRP+ +LT GQCFNW               RQ+A        WVG LG  V++I++TP TTLFR L      +   E  K          L+ YF L  PL PLY+ WS+ D R+  +A A+PGVR++RQ P+EC+FSFICSSNNNIPRIT ML   R  YG  ++ +     AA D   +DS+ I              SFPT+++LA +A+E +LR MG GYRAK+I+ +   +   GG E+ L +R+   DD   V+D+L+   G+G KV
Sbjct:    9 WIDLDVPPQELRPSSTLTNGQCFNWMVVETEESPDAINSPRQSAWGTHDGKEWVGPLGDRVLSIKETPTTTLFRVL------HGPTEGTKEY--------LQQYFRLETPLSPLYEEWSKADTRLKKIAAAIPGVRILRQAPLECMFSFICSSNNNIPRITKMLSSFRETYGSFMMDIPISSSAAND---DDSLSI-------------FSFPTLDSLA-NASEGDLRAMGLGYRAKFIIGTRDLLQTSGGEEFLLNLRSN--DDCQAVQDELIKFSGIGRKV 258          
BLAST of mRNA_H-elongata_contig9176.16632.1 vs. uniprot
Match: A0A7S3Q6L0_9STRA (DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q6L0_9STRA)

HSP 1 Score: 201 bits (512), Expect = 4.600e-58
Identity = 119/290 (41.03%), Postives = 164/290 (56.55%), Query Frame = 1
Query:    1 WVDLCVPPEELRPAFSLTIGQCFNWR---------------------QAAANCW--------VGVLGRDVIAIRQTPRTTLFRSLSMSLTKNSEKEDVKRSASAKVAAKLRDYFFLSEPLMPLYQRWSEGDMRMAAVATALPGVRVVRQDPVECIFSFICSSNNNIPRITLMLDKLRHAYGELLLRVGEEGLAATDLLGNDSILIPELEDWTRKPLEFHSFPTVEALAQHATEANLREMGFGYRAKYIVESAKHMIDGGGAEWALRMRATGRDD-VRDQLVTLKGVGPKV 780
            W+DL VPP ELRP+ +LT GQCFNW                       A+A+ W        VG +   +++I++TP TT++R L  S T      DV     ++    L DYF L   L+PLYQ WS+ D R++ +A  +PG+R++RQDPVEC+FSFICSSNNNIPRIT ML   R  YGE ++ +         LL  D + +  LE      +  +SFPT+E L + +TE  LREMG GYRAKYI+E+   +ID GG E+ L +R       V+++L+   G+G KV
Sbjct:  119 WIDLKVPPHELRPSATLTTGQCFNWNVVHDDIRIRMMEENKDMDILTSASASAWGTFNETEWVGPISNMILSIKETPDTTMYRILYQSPTC-----DVNHINMSEF---LTDYFQLETALLPLYQSWSQNDERLSQIAAVIPGLRIIRQDPVECLFSFICSSNNNIPRITKMLSSFRETYGEKMMDL------PVRLLECDGLSLEPLE----LTMAIYSFPTLEEL-KSSTEKELREMGLGYRAKYIIETRDMLIDFGGKEYLLSLRKQSDSKAVQEELIQFSGIGRKV 389          
BLAST of mRNA_H-elongata_contig9176.16632.1 vs. uniprot
Match: A0A6U6FTQ8_9STRA (DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6FTQ8_9STRA)

HSP 1 Score: 194 bits (492), Expect = 1.760e-54
Identity = 120/287 (41.81%), Postives = 159/287 (55.40%), Query Frame = 1
Query:    1 WVDLCVPPEELRPAFSLTIGQCFNW----------------------RQAA-----ANCWVGVLGRDVIAIRQTPRTTLFRSLSMSLTKNSEKEDVKRSASAKVAAKLRDYFFLSEPLMPLYQRWSEGDMRMAAVATALPGVRVVRQDPVECIFSFICSSNNNIPRITLMLDKLRHAYGELLLRVGEEGLAATDLLGNDSILIPELEDWTRKPLEFHSFPTVEALAQHATEANLREMGFGYRAKYIVESAKHMIDGGGAEWALRMRATGRDDVRDQLVTLKGVGPKV 780
            W DL + P+ELRP+ +LT GQCFNW                      +++A     A  WVG L   V  IR+T  TTLFR L     K +E+              LR YF L   L+PLY  WSE D R++ +A A+PGVRVVRQDP EC+FSFICSSNNNIPRITLML +LR  YG  L+ V    L +  +L +             + L+ +SFPT+ ALA  AT+ +LR MG GYRAKYI E+ K + + GG ++   +R +    V+++L+   G+G KV
Sbjct:  201 WTDLRISPDELRPSATLTTGQCFNWIVVQSDRNGLPSGDDGGVANMAQKSAWGTHDATEWVGPLRDWVFCIRETSTTTLFRVLH-GTPKGAEEY-------------LRRYFQLETQLVPLYNLWSESDSRLSKIAAAIPGVRVVRQDPKECLFSFICSSNNNIPRITLMLSRLREKYGVHLMEVPARTLDSGGVLRSG------------EKLKIYSFPTLAALAP-ATDIDLRAMGLGYRAKYIAETTKLLNEVGGEDFLFSLRKSNASFVQEELIKFSGIGRKV 460          
BLAST of mRNA_H-elongata_contig9176.16632.1 vs. uniprot
Match: A0A7V1M6K3_9BACT (ENDO3c domain-containing protein n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7V1M6K3_9BACT)

HSP 1 Score: 185 bits (470), Expect = 5.330e-54
Identity = 107/260 (41.15%), Postives = 142/260 (54.62%), Query Frame = 1
Query:    1 WVDLCVPPEELRPAFSLTIGQCFNWRQAAANCWVGVLGRDVIAIRQTPRTTLFRSLSMSLTKNSEKEDVKRSASAKVAAKLRDYFFLSEPLMPLYQRWSEGDMRMAAVATALPGVRVVRQDPVECIFSFICSSNNNIPRITLMLDKLRHAYGELLLRVGEEGLAATDLLGNDSILIPELEDWTRKPLEFHSFPTVEALAQHATEANLREMGFGYRAKYIVESAKHMIDGGGAEWALRMRATGRDDVRDQLVTLKGVGPKV 780
            W  L VPPEELR   +L  GQ F W+  A N W GV+G  V+ +RQT     + S+                   ++A  LRDYF L  PL PLY++W+E D R A +A A PG+RV+R DPVEC+FSF+CSS NNIPRIT M+D L   YGE L+ V  +G+A                        +H FPTV ALA  A+E  L  +GFGYRA+ +V++A+ + D G  +W  R+R    ++    L TL G G K+
Sbjct:    2 WRSLGVPPEELRCDVTLVCGQSFRWKPVAENEWRGVIGSWVVTLRQTAGEVFYHSIP----------------DDEIAPLLRDYFQLHIPLAPLYRQWAEADARFARIAPAFPGLRVLRTDPVECLFSFLCSSANNIPRITRMIDALCQRYGEKLVEV--DGIA------------------------YHRFPTVSALAG-ASEQELFALGFGYRARLVVKAARELSDRG-EDWLYRLRRVPYEEAHRALTTLPGAGHKI 217          
BLAST of mRNA_H-elongata_contig9176.16632.1 vs. uniprot
Match: A0A7S2DRB9_9STRA (DNA-(apurinic or apyrimidinic site) lyase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DRB9_9STRA)

HSP 1 Score: 187 bits (474), Expect = 9.150e-53
Identity = 114/294 (38.78%), Postives = 159/294 (54.08%), Query Frame = 1
Query:    1 WVDLCVPPEELRPAFSLTIGQCFNWR------------------QAAANC-----------WVGVLGRDVIAIRQTPRTTLFRSLSMSLTKNSEKEDVKRSASAKVAAKLRDYFFLSEPLMPLYQRWSEGDMRMAAVATALPGVRVVRQDPVECIFSFICSSNNNIPRITLMLDKLRHAYGELLLRVG--EEGLAATDLLGNDSILIPELEDWTRKPLEFHSFPTVEALAQHATEANLREMGFGYRAKYIVESAKHMIDGGGAEWALRMR---ATGRDDVRDQLVTLKGVGPKV 780
            W DL  PPEELR   SL  GQCFNWR                     AN            WVGV+G  V+A+R+T  +  F  L+         ++ K+    ++ ++L D F L  PL  LY  WS  D R+A VA A+PG+RV+RQDPVEC+F+FICSSNNNIPRITLM++++R AYG  L+ +    +G +      +D   I + +    +   F+SFP VE +A+ A E   R +G GYRA+++ ESA  ++  GG  W + +R   A  R+ V ++L    GVG KV
Sbjct:   47 WYDLSTPPEELRVTASLATGQCFNWRPIKLPLVSTEKRPTTCASSPPANAIGLEKSDIDFDWVGVVGDRVVALRETGGSVHFACLN--------NKNAKKDQETELRSELEDMFQLEVPLKGLYHSWSRADDRLARVAEAIPGLRVLRQDPVECLFAFICSSNNNIPRITLMMNRIRAAYGTHLMDIAVVSDGGSTKSSSTDDPTRIAQPDTVVHR---FYSFPDVEVMAR-AREEEYRHLGLGYRARFVRESAGSLLSLGGRPWLVGLRDRDAYSREAVLEELKKFTGVGSKV 328          
BLAST of mRNA_H-elongata_contig9176.16632.1 vs. uniprot
Match: A0A7S1DH58_HEMAN (DNA-(apurinic or apyrimidinic site) lyase (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DH58_HEMAN)

HSP 1 Score: 176 bits (445), Expect = 4.220e-50
Identity = 102/260 (39.23%), Postives = 139/260 (53.46%), Query Frame = 1
Query:    1 WVDLCVPPEELRPAFSLTIGQCFNWRQAAANCWVGVLGRDVIAIRQTPRTTLFRSLSMSLTKNSEKEDVKRSASAKVAAKLRDYFFLSEPLMPLYQRWSEGDMRMAAVATALPGVRVVRQDPVECIFSFICSSNNNIPRITLMLDKLRHAYGELLLRVGEEGLAATDLLGNDSILIPELEDWTRKPLEFHSFPTVEALAQHATEANLREMGFGYRAKYIVESAKHMIDGGGAEWALRMRATGRDDVRDQLVTLKGVGPKV 780
            W  L   P ELR   +L  GQ F WR    N W GV+   ++++RQTP             K         + S ++ A + D F L  PL+PLY+ WS+ D +   +A   PG+RV+RQDPVEC+FSFICSSNNNI RITLM++++   YGE L   G  G       G+                 F+ FPTVEAL++  +E  LR +G GYRAK+IV++A  ++D GG  W + +R     + R+ L  L GVG KV
Sbjct:   30 WAPLGAAPAELRLDVTLVCGQNFRWRATGDNEWTGVVADTMVSVRQTPTDVYVTEWGAGGRKG--------APSKELMASVADLFHLKVPLVPLYETWSKADPKCELLAVGYPGLRVMRQDPVECLFSFICSSNNNIARITLMIERISEKYGEAL---GTHG-------GHS----------------FYKFPTVEALSK-VSEEELRALGMGYRAKFIVKTAAILLDKGGRGWLMGLRELPHMEAREALEELHGVGSKV 254          
BLAST of mRNA_H-elongata_contig9176.16632.1 vs. uniprot
Match: A0A7R9U9U2_9STRA (DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9U2_9STRA)

HSP 1 Score: 178 bits (451), Expect = 8.710e-50
Identity = 115/279 (41.22%), Postives = 152/279 (54.48%), Query Frame = 1
Query:    7 DLCVPPEELRPAFSLTIGQCFNWRQAAA--------------------NCWVGVLGRDVIAIRQTPRTTLFRSLSMSLTKNSEKEDVKRSASAKVAAKLRDYFFLSEP-LMPLYQRWSEGDMRMAAVATALPGVRVVRQDPVECIFSFICSSNNNIPRITLMLDKLRHAYGELLLRVGEEGLAATDLLGNDSILIPELEDWTRKPLEFHSFPTVEALAQHATEANLREMGFGYRAKYIVESAKHMIDGGGAEWALRMRATGRDDVRDQLVTLKGVGPKV 780
            DL V PEELR    L  GQ F+WR   A                    + W+GV+  DV  +++TP TTL   L+ + T             A+   KLRDY  L +  L  LY  WS  D R+AAVA  LPG+RV+RQDP+EC+ SFICSSNNNI RI LML +LR   G    R+G             + ++P+  +     +E HSFPTV+ +++  TE  LREMGFGYRAKYIV + + + + GG E   R+R+  R +V+ QL+   GVGPKV
Sbjct:   57 DLQVAPEELRINDVLPTGQVFHWRPLPATAAVDKSAAEDAGAKGSEVVDAWIGVVDLDVFVLKETPETTLAACLTSADT-------------ARWRRKLRDYLNLEKGRLRELYALWSSVDDRLAAVAACLPGIRVLRQDPLECLLSFICSSNNNIARIQLMLGRLREECGT---RLG-------------TFMLPDGNE-----VEMHSFPTVQQMSK-LTEQRLREMGFGYRAKYIVGTVQMLSEQGGTEHLTRLRSMPRPEVKSQLLEYPGVGPKV 300          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9176.16632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4R5_ECTSI3.170e-11870.77DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=... [more]
A0A4D9CXL3_9STRA2.760e-6042.61DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=... [more]
B5YNS8_THAPS6.240e-5943.02DNA-(apurinic or apyrimidinic site) lyase (Fragmen... [more]
A0A7S1CUH0_9STRA2.110e-5842.40DNA-(apurinic or apyrimidinic site) lyase (Fragmen... [more]
A0A7S3Q6L0_9STRA4.600e-5841.03DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=... [more]
A0A6U6FTQ8_9STRA1.760e-5441.81DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=... [more]
A0A7V1M6K3_9BACT5.330e-5441.15ENDO3c domain-containing protein n=1 Tax=Armatimon... [more]
A0A7S2DRB9_9STRA9.150e-5338.78DNA-(apurinic or apyrimidinic site) lyase (Fragmen... [more]
A0A7S1DH58_HEMAN4.220e-5039.23DNA-(apurinic or apyrimidinic site) lyase (Fragmen... [more]
A0A7R9U9U2_9STRA8.710e-5041.22DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig9176contigH-elongata_contig9176:106..2059 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score355.9
Seed ortholog evalue1.6e-95
Seed eggNOG ortholog2880.D7G4R5
Preferred nameOGG1
KEGG rclassRC00376
KEGG koko:K01809,ko:K03660,ko:K08193,ko:K11348,ko:K18081,ko:K20315
KEGG TC2.A.1.14
KEGG ReactionR01819
KEGG Pathwayko00051,ko00520,ko00562,ko01100,ko01110,ko01130,ko03410,ko04070,map00051,map00520,map00562,map01100,map01110,map01130,map03410,map04070
KEGG ModuleM00114
GOsGO:0000702,GO:0000723,GO:0000731,GO:0000775,GO:0001101,GO:0002526,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003824,GO:0003906,GO:0004518,GO:0004519,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006220,GO:0006244,GO:0006259,GO:0006278,GO:0006281,GO:0006282,GO:0006284,GO:0006285,GO:0006289,GO:0006301,GO:0006304,GO:0006355,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0006954,GO:0006974,GO:0006979,GO:0006996,GO:0007004,GO:0007568,GO:0007584,GO:0008017,GO:0008092,GO:0008150,GO:0008152,GO:0008534,GO:0009056,GO:0009058,GO:0009059,GO:0009117,GO:0009166,GO:0009219,GO:0009223,GO:0009262,GO:0009264,GO:0009314,GO:0009394,GO:0009416,GO:0009605,GO:0009628,GO:0009636,GO:0009719,GO:0009725,GO:0009889,GO:0009892,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010243,GO:0010468,GO:0010556,GO:0010605,GO:0010833,GO:0010941,GO:0014070,GO:0015631,GO:0016043,GO:0016363,GO:0016604,GO:0016607,GO:0016787,GO:0016788,GO:0016798,GO:0016799,GO:0016829,GO:0016835,GO:0018130,GO:0019104,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0019637,GO:0019692,GO:0019985,GO:0031323,GO:0031324,GO:0031326,GO:0031518,GO:0031667,GO:0031974,GO:0031981,GO:0032200,GO:0032355,GO:0032356,GO:0032357,GO:0032502,GO:0032991,GO:0033273,GO:0033554,GO:0033683,GO:0033993,GO:0034039,GO:0034399,GO:0034404,GO:0034599,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0042221,GO:0042493,GO:0042592,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044270,GO:0044271,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045007,GO:0045008,GO:0045471,GO:0045738,GO:0045934,GO:0046386,GO:0046434,GO:0046483,GO:0046677,GO:0046686,GO:0046700,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051252,GO:0051276,GO:0051593,GO:0051716,GO:0055086,GO:0060249,GO:0060255,GO:0060548,GO:0065007,GO:0065008,GO:0070013,GO:0070887,GO:0070987,GO:0071241,GO:0071248,GO:0071276,GO:0071704,GO:0071840,GO:0071897,GO:0072527,GO:0072529,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090305,GO:0097159,GO:0097305,GO:0098687,GO:0140078,GO:0140097,GO:1901135,GO:1901136,GO:1901291,GO:1901292,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901698,GO:1901700,GO:1903506,GO:2000112,GO:2000779,GO:2000780,GO:2001020,GO:2001021,GO:2001141
EggNOG free text desc.8-oxo-7,8-dihydroguanine DNA N-glycosylase activity
EggNOG OGsCOG0122@1,KOG2875@2759
Ec32 ortholog descriptionendonuclease III/similar to 8-oxoguanine DNA glycosylase isoform 1b
Ec32 orthologEc-20_000660.1
EC3.1.3.64,3.1.3.95,4.2.99.18,5.3.1.8
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko02000,ko03036,ko03400,ko04131
Hectar predicted targeting categoryother localisation
Exons5
Model size792
Cds size792
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig9176.16632.1prot_H-elongata_contig9176.16632.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig9176 106..2059 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931315.5132797-CDS-H-elongata_contig9176:105..2661622931315.5132797-CDS-H-elongata_contig9176:105..266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9176 106..266 -
1691679786.2325268-CDS-H-elongata_contig9176:105..2661691679786.2325268-CDS-H-elongata_contig9176:105..266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9176 106..266 -
1622931315.5265698-CDS-H-elongata_contig9176:437..5431622931315.5265698-CDS-H-elongata_contig9176:437..543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9176 438..543 -
1691679786.2450101-CDS-H-elongata_contig9176:437..5431691679786.2450101-CDS-H-elongata_contig9176:437..543Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9176 438..543 -
1622931315.544005-CDS-H-elongata_contig9176:722..8911622931315.544005-CDS-H-elongata_contig9176:722..891Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9176 723..891 -
1691679786.2548628-CDS-H-elongata_contig9176:722..8911691679786.2548628-CDS-H-elongata_contig9176:722..891Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9176 723..891 -
1622931315.562028-CDS-H-elongata_contig9176:1174..13961622931315.562028-CDS-H-elongata_contig9176:1174..1396Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9176 1175..1396 -
1691679786.2725205-CDS-H-elongata_contig9176:1174..13961691679786.2725205-CDS-H-elongata_contig9176:1174..1396Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9176 1175..1396 -
1622931315.5738502-CDS-H-elongata_contig9176:1925..20591622931315.5738502-CDS-H-elongata_contig9176:1925..2059Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9176 1926..2059 -
1691679786.2805114-CDS-H-elongata_contig9176:1925..20591691679786.2805114-CDS-H-elongata_contig9176:1925..2059Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig9176 1926..2059 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig9176.16632.1

>prot_H-elongata_contig9176.16632.1 ID=prot_H-elongata_contig9176.16632.1|Name=mRNA_H-elongata_contig9176.16632.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=264bp
WVDLCVPPEELRPAFSLTIGQCFNWRQAAANCWVGVLGRDVIAIRQTPRT
TLFRSLSMSLTKNSEKEDVKRSASAKVAAKLRDYFFLSEPLMPLYQRWSE
GDMRMAAVATALPGVRVVRQDPVECIFSFICSSNNNIPRITLMLDKLRHA
YGELLLRVGEEGLAATDLLGNDSILIPELEDWTRKPLEFHSFPTVEALAQ
HATEANLREMGFGYRAKYIVESAKHMIDGGGAEWALRMRATGRDDVRDQL
VTLKGVGPKVCCK*
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mRNA from alignment at H-elongata_contig9176:106..2059-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig9176.16632.1 ID=mRNA_H-elongata_contig9176.16632.1|Name=mRNA_H-elongata_contig9176.16632.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1954bp|location=Sequence derived from alignment at H-elongata_contig9176:106..2059- (Himanthalia elongata Himel1 dioecious)
TGGGTAGACCTGTGTGTCCCGCCTGAGGAGCTTCGACCGGCTTTCTCCCT CACGATCGGGCAGTGTTTCAACTGGCGCCAGGCTGCTGCCAACTGTTGGG TAGGCGTCCTTGGTCGTGACGTCATCGCCATCAGGTGCGGGCAATACCCT CGATGATGCCAACAGAGCCTTCCGCGAGCCTCAATAATACTGTACCCTAG AAGGCCTGTTAATAAAGGTTTTAAACGAGTTTTTTGCTATGTTACCATTC GAAACAAAACATGTACGGTGGGTGAGACGTAAGCTGTAGAAAACATCCCC GGCCCCGGTCGAAACATTCCTGGAGTGCTATTTAAGGGGAAGGGGAATGT GGTATTCAACGTGACCTCAAAGCCTGCCTTCTTGTGGACTTCCACGGGGT GTTACATCGGACTATAATATACCAGTAGTCCTAATATATTGGAAACCCAC ATGGTAGGTACCTGGTACGTTAGATCCTAGCTGTTGGTTAGCACTCTTCC TTGAGAGAAGAAAATATTGAAATTGTTCGTGAGATGAAAACATGTTGCCT CGAACCTCGAGTTTTGTTGTCATCACATCTAGTCTAACGTCCGATACTTT CATTAATTTTGCCTATGTTAATGGATATAGCTCGATGTATTCAACGTGTA CCAATTCTCGCAGGCAGACGCCGCGCACCACCCTATTCCGCAGCCTCAGC ATGAGCCTTACCAAGAATAGCGAGAAGGAAGACGTGAAACGTTCAGCATC AGCCAAGGTGGCAGCCAAGCTCCGAGATTACTTCTTCCTTTCAGAACCCT TAATGCCTTTGTATCAGAGATGGTCTGAGGGCGACATGCGGATGGCAGCA GTAGCCACCGCCCTTCCCGGAGTCCGAGTAGTGAGGTGAGGCTCGATATT GTTTTATCCCAGCATTGCATGTTCCGTGGGGTCTTACTCCTGCAGAGTGA TCGGTTGATGTCACCAGGCATCCGACGACGCAGCTGGCCACATCAGAGGG CTATCCTTCTATCTCCCACGAAGAGTGAAATTACTATAACTCGTGGCTGA TTGTTCAAAAGAAAGAGTAGGCCTGCTTGGTGCGTTGCGAGTGAACGAAC AATGTGGGCTTTATTTGCGCTTCTCGGGATTAATTTTTTAATAGTCCAAC CGCGTCCAACTATTGTAGGCAAGACCCTGTGGAGTGCATCTTCAGCTTCA TCTGCTCGTCAAACAACAATATCCCCCGCATCACCCTTATGCTTGATAAG CTTCGACACGCCTACGGTGAACTTCTTTTGCGCGTCGGGGAGGAAGGACT AGCTGCTACTGACCTGTTGGGTAACGACAGCATTTTGGTGAGAGCAGGAC GGGAAGACCCGAACCCCGTGATAGTCGACGTTCTTGCGGTGATGTCTACA GTACAGTATCTCTATTACTATTACCGATTACTATTATTCGCCCCGCGCCC ATGTAGAGGTGTTATATTTCTGAACACCTGCCGGTTACTTGGTGTGATCA TCCCTGTCATTATCAGATTCCAGAGTTAGAGGACTGGACGAGGAAACCGC TGGAATTTCACTCATTCCCCACTGTCGAAGCGCTAGCACAACATGCTACG GAGGCAAACCTTCGAGAGATGGGTGAGTGATTGAGTAGACTAGACCCACT GATACTATTCATACTTCATGCTGTCTCTTGGGATGGAAGCCACTGCACAA CCACACGGTCTTCAGCCGTCAAAACCTGACGACCTTGCTTGTTGTTGACG TATGTCATCATGTCATCACGGTATCATGCCATCATGTTATCAGGGTTCGG CTACCGTGCCAAGTATATCGTTGAAAGCGCCAAGCATATGATCGACGGGG GTGGCGCAGAGTGGGCCTTACGAATGAGGGCCACGGGGAGGGATGACGTG CGCGATCAGCTGGTCACTCTCAAGGGAGTTGGTCCCAAGGTGTGCTGCAA ATAG
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Coding sequence (CDS) from alignment at H-elongata_contig9176:106..2059-

>mRNA_H-elongata_contig9176.16632.1 ID=mRNA_H-elongata_contig9176.16632.1|Name=mRNA_H-elongata_contig9176.16632.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1584bp|location=Sequence derived from alignment at H-elongata_contig9176:106..2059- (Himanthalia elongata Himel1 dioecious)
TGGGTAGACCTGTGTGTCCCGCCTGAGGAGCTTCGACCGGCTTTCTCCCT
CACGATCGGGCAGTGTTTCAACTGGCGCCAGGCTGCTGCCAACTGTTGGG
TAGGCGTCCTTGGTCGTGACGTCATCGCCATCAGTGGGTAGACCTGTGTG
TCCCGCCTGAGGAGCTTCGACCGGCTTTCTCCCTCACGATCGGGCAGTGT
TTCAACTGGCGCCAGGCTGCTGCCAACTGTTGGGTAGGCGTCCTTGGTCG
TGACGTCATCGCCATCAGGCAGACGCCGCGCACCACCCTATTCCGCAGCC
TCAGCATGAGCCTTACCAAGAATAGCGAGAAGGAAGACGTGAAACGTTCA
GCATCAGCCAAGGTGGCAGCCAAGCTCCGAGATTACTTCTTCCTTTCAGA
ACCCTTAATGCCTTTGTATCAGAGATGGTCTGAGGGCGACATGCGGATGG
CAGCAGTAGCCACCGCCCTTCCCGGAGTCCGAGTAGTGAGGCAGACGCCG
CGCACCACCCTATTCCGCAGCCTCAGCATGAGCCTTACCAAGAATAGCGA
GAAGGAAGACGTGAAACGTTCAGCATCAGCCAAGGTGGCAGCCAAGCTCC
GAGATTACTTCTTCCTTTCAGAACCCTTAATGCCTTTGTATCAGAGATGG
TCTGAGGGCGACATGCGGATGGCAGCAGTAGCCACCGCCCTTCCCGGAGT
CCGAGTAGTGAGGCAAGACCCTGTGGAGTGCATCTTCAGCTTCATCTGCT
CGTCAAACAACAATATCCCCCGCATCACCCTTATGCTTGATAAGCTTCGA
CACGCCTACGGTGAACTTCTTTTGCGCGTCGGGGAGGAAGGACTAGCTGC
TACTGACCTGTTGGGTAACGACAGCATTTTGGCAAGACCCTGTGGAGTGC
ATCTTCAGCTTCATCTGCTCGTCAAACAACAATATCCCCCGCATCACCCT
TATGCTTGATAAGCTTCGACACGCCTACGGTGAACTTCTTTTGCGCGTCG
GGGAGGAAGGACTAGCTGCTACTGACCTGTTGGGTAACGACAGCATTTTG
ATTCCAGAGTTAGAGGACTGGACGAGGAAACCGCTGGAATTTCACTCATT
CCCCACTGTCGAAGCGCTAGCACAACATGCTACGGAGGCAAACCTTCGAG
AGATGGATTCCAGAGTTAGAGGACTGGACGAGGAAACCGCTGGAATTTCA
CTCATTCCCCACTGTCGAAGCGCTAGCACAACATGCTACGGAGGCAAACC
TTCGAGAGATGGGGTTCGGCTACCGTGCCAAGTATATCGTTGAAAGCGCC
AAGCATATGATCGACGGGGGTGGCGCAGAGTGGGCCTTACGAATGAGGGC
CACGGGGAGGGATGACGTGCGCGATCAGCTGGTCACTCTCAAGGGAGTTG
GTCCCAAGGTGTGCTGCAAATAGGGTTCGGCTACCGTGCCAAGTATATCG
TTGAAAGCGCCAAGCATATGATCGACGGGGGTGGCGCAGAGTGGGCCTTA
CGAATGAGGGCCACGGGGAGGGATGACGTGCGCGATCAGCTGGTCACTCT
CAAGGGAGTTGGTCCCAAGGTGTGCTGCAAATAG
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