mRNA_H-elongata_contig9176.16632.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig9176.16632.1 vs. uniprot
Match: D7G4R5_ECTSI (DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4R5_ECTSI) HSP 1 Score: 353 bits (907), Expect = 3.170e-118 Identity = 184/260 (70.77%), Postives = 201/260 (77.31%), Query Frame = 1
Query: 1 WVDLCVPPEELRPAFSLTIGQCFNWRQAAANCWVGVLGRDVIAIRQTPRTTLFRSLSMSLTKNSEKEDVKRSASAKVAAKLRDYFFLSEPLMPLYQRWSEGDMRMAAVATALPGVRVVRQDPVECIFSFICSSNNNIPRITLMLDKLRHAYGELLLRVGEEGLAATDLLGNDSILIPELEDWTRKPLEFHSFPTVEALAQHATEANLREMGFGYRAKYIVESAKHMIDGGGAEWALRMRATGRDDVRDQLVTLKGVGPKV 780
W DLCVPPEELRP +LT+GQCFNWRQA A+CWVGVLGR+VIAIRQTP TTLFRSLS T K +A +A LR+YFFL PL PLYQRWSEGD RMAAVA ++ GVRVVRQDPVECIFSFICSSNNNIPRIT ML KLR YG+LLL VG+ GLAAT LGN I E E+W + PLE HSFPTV+ALA ATEA+LR MGFGYRAKYIV+SAK M GGA WAL MR RD+VR QLVTL GVGPKV
Sbjct: 38 WHDLCVPPEELRPDSTLTVGQCFNWRQAGADCWVGVLGREVIAIRQTPCTTLFRSLSAVTTDGDAK------VAAALATTLREYFFLRTPLAPLYQRWSEGDPRMAAVACSISGVRVVRQDPVECIFSFICSSNNNIPRITGMLGKLRRTYGDLLLNVGKGGLAATGALGN----ITECEEWAKLPLELHSFPTVDALATRATEADLRAMGFGYRAKYIVDSAKLMHSNGGAGWALDMRNKDRDEVRSQLVTLCGVGPKV 287
BLAST of mRNA_H-elongata_contig9176.16632.1 vs. uniprot
Match: A0A4D9CXL3_9STRA (DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CXL3_9STRA) HSP 1 Score: 213 bits (542), Expect = 2.760e-60 Identity = 124/291 (42.61%), Postives = 160/291 (54.98%), Query Frame = 1
Query: 1 WVDLCVPPEELRPAFSLTIGQCFNWRQAA---------------------------ANC---WVGVLGRDVIAIRQTPRTTLFRSLSMSLTKNSEKEDVKRSASAKVA-AKLRDYFFLSEPLMPLYQRWSEGDMRMAAVATALPGVRVVRQDPVECIFSFICSSNNNIPRITLMLDKLRHAYGELLLRVGEEGLAATDLLGNDSILIPELEDWTRKPLEFHSFPTVEALAQHATEANLREMGFGYRAKYIVESAKHMIDGGGAEWALRMRATGRDDVRDQLVTLKGVGPKV 780
W+DL VPP ELRP FSLT+GQCFNWR+ C W+GVL R V+ IRQTP TTL R + S+ + + + KV A+L+DYF ++ L PLY W+EGD+RM VA LPGVRV+RQDPVEC+FSFICSSNNNIPRI LMLD+LR YGE L + +H+FP + +LA A+E LR +G GYRA++I +A ++D GG EW + +R R++ + L T GVG KV
Sbjct: 24 WMDLDVPPHELRPEFSLTMGQCFNWRRQGLETQAKVAVGEGEEGGREXXXXXXXXGGGCDKVWIGVLDRHVLEIRQTPTTTLVRRVGASVDEGRVEGGREGEVEDKVLMARLQDYFQVNTSLRPLYHCWAEGDVRMKTVAEHLPGVRVLRQDPVECLFSFICSSNNNIPRIALMLDRLRKTYGEPLGK------------------------------GYHAFPPLSSLAS-ASEEELRGLGLGYRARFIKLTASQLLDLGGREWLMSLREKSREEAQQALCTFPGVGRKV 283
BLAST of mRNA_H-elongata_contig9176.16632.1 vs. uniprot
Match: B5YNS8_THAPS (DNA-(apurinic or apyrimidinic site) lyase (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YNS8_THAPS) HSP 1 Score: 197 bits (502), Expect = 6.240e-59 Identity = 114/265 (43.02%), Postives = 155/265 (58.49%), Query Frame = 1
Query: 1 WVDLCVPPEELRPAFSLTIGQCFNWRQAA-ANCWVGVLGRDVIAIRQTPRTTLFRSLSMSLTKNSEKEDVKRSASAKVAAKLRDYFFLSEPLMPLYQRWSEGDMRMAAVATALPGVRVVRQDPVECIFSFICSSNNNIPRITLMLDKLRHAYGELLLRVGE---EGLAATDLLGNDSILIPELEDWTRKPLEFHSFPTVEALAQHATEANLREMGFGYRAKYIVESAKHMIDGGGAEWALRMRA-TGRDDVRDQLVTLKGVGPKV 780
WVDL V PEELRP+ +LT GQCFNW A W+G LG V++I++TP TTLFR + ++E L+ YF L L PLY+ WS+ D R++ +ATA+PGVR++RQ+PVEC+FSFICSSNNNIPRIT ML R YG ++ V EG+A ++FPT+E+L++ ATE LR MG GYR+KYI E+ ++ GG E+ + +R+ T V+D+L G+G KV
Sbjct: 5 WVDLKVAPEELRPSSTLTNGQCFNWMSHHDAKEWIGPLGNRVLSIKETPTTTLFRIVHGPTEGSTEY--------------LQQYFRLETALSPLYKEWSKADDRLSKIATAIPGVRILRQEPVECMFSFICSSNNNIPRITKMLAAFREKYGTFMIDVPSQNGEGIA------------------------LYTFPTIESLSE-ATEDELRGMGLGYRSKYITETRDLLVKSGGEEYLIGLRSLTDAQVVQDELTKFSGIGRKV 230
BLAST of mRNA_H-elongata_contig9176.16632.1 vs. uniprot
Match: A0A7S1CUH0_9STRA (DNA-(apurinic or apyrimidinic site) lyase (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S1CUH0_9STRA) HSP 1 Score: 198 bits (503), Expect = 2.110e-58 Identity = 120/283 (42.40%), Postives = 162/283 (57.24%), Query Frame = 1
Query: 1 WVDLCVPPEELRPAFSLTIGQCFNW---------------RQAAANC-----WVGVLGRDVIAIRQTPRTTLFRSLSMSLTKNSEKEDVKRSASAKVAAKLRDYFFLSEPLMPLYQRWSEGDMRMAAVATALPGVRVVRQDPVECIFSFICSSNNNIPRITLMLDKLRHAYGELLLRVGEEGLAATDLLGNDSILIPELEDWTRKPLEFHSFPTVEALAQHATEANLREMGFGYRAKYIVESAKHMIDGGGAEWALRMRATGRDD---VRDQLVTLKGVGPKV 780
W+DL VPP+ELRP+ +LT GQCFNW RQ+A WVG LG V++I++TP TTLFR L + E K L+ YF L PL PLY+ WS+ D R+ +A A+PGVR++RQ P+EC+FSFICSSNNNIPRIT ML R YG ++ + AA D +DS+ I SFPT+++LA +A+E +LR MG GYRAK+I+ + + GG E+ L +R+ DD V+D+L+ G+G KV
Sbjct: 9 WIDLDVPPQELRPSSTLTNGQCFNWMVVETEESPDAINSPRQSAWGTHDGKEWVGPLGDRVLSIKETPTTTLFRVL------HGPTEGTKEY--------LQQYFRLETPLSPLYEEWSKADTRLKKIAAAIPGVRILRQAPLECMFSFICSSNNNIPRITKMLSSFRETYGSFMMDIPISSSAAND---DDSLSI-------------FSFPTLDSLA-NASEGDLRAMGLGYRAKFIIGTRDLLQTSGGEEFLLNLRSN--DDCQAVQDELIKFSGIGRKV 258
BLAST of mRNA_H-elongata_contig9176.16632.1 vs. uniprot
Match: A0A7S3Q6L0_9STRA (DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q6L0_9STRA) HSP 1 Score: 201 bits (512), Expect = 4.600e-58 Identity = 119/290 (41.03%), Postives = 164/290 (56.55%), Query Frame = 1
Query: 1 WVDLCVPPEELRPAFSLTIGQCFNWR---------------------QAAANCW--------VGVLGRDVIAIRQTPRTTLFRSLSMSLTKNSEKEDVKRSASAKVAAKLRDYFFLSEPLMPLYQRWSEGDMRMAAVATALPGVRVVRQDPVECIFSFICSSNNNIPRITLMLDKLRHAYGELLLRVGEEGLAATDLLGNDSILIPELEDWTRKPLEFHSFPTVEALAQHATEANLREMGFGYRAKYIVESAKHMIDGGGAEWALRMRATGRDD-VRDQLVTLKGVGPKV 780
W+DL VPP ELRP+ +LT GQCFNW A+A+ W VG + +++I++TP TT++R L S T DV ++ L DYF L L+PLYQ WS+ D R++ +A +PG+R++RQDPVEC+FSFICSSNNNIPRIT ML R YGE ++ + LL D + + LE + +SFPT+E L + +TE LREMG GYRAKYI+E+ +ID GG E+ L +R V+++L+ G+G KV
Sbjct: 119 WIDLKVPPHELRPSATLTTGQCFNWNVVHDDIRIRMMEENKDMDILTSASASAWGTFNETEWVGPISNMILSIKETPDTTMYRILYQSPTC-----DVNHINMSEF---LTDYFQLETALLPLYQSWSQNDERLSQIAAVIPGLRIIRQDPVECLFSFICSSNNNIPRITKMLSSFRETYGEKMMDL------PVRLLECDGLSLEPLE----LTMAIYSFPTLEEL-KSSTEKELREMGLGYRAKYIIETRDMLIDFGGKEYLLSLRKQSDSKAVQEELIQFSGIGRKV 389
BLAST of mRNA_H-elongata_contig9176.16632.1 vs. uniprot
Match: A0A6U6FTQ8_9STRA (DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6FTQ8_9STRA) HSP 1 Score: 194 bits (492), Expect = 1.760e-54 Identity = 120/287 (41.81%), Postives = 159/287 (55.40%), Query Frame = 1
Query: 1 WVDLCVPPEELRPAFSLTIGQCFNW----------------------RQAA-----ANCWVGVLGRDVIAIRQTPRTTLFRSLSMSLTKNSEKEDVKRSASAKVAAKLRDYFFLSEPLMPLYQRWSEGDMRMAAVATALPGVRVVRQDPVECIFSFICSSNNNIPRITLMLDKLRHAYGELLLRVGEEGLAATDLLGNDSILIPELEDWTRKPLEFHSFPTVEALAQHATEANLREMGFGYRAKYIVESAKHMIDGGGAEWALRMRATGRDDVRDQLVTLKGVGPKV 780
W DL + P+ELRP+ +LT GQCFNW +++A A WVG L V IR+T TTLFR L K +E+ LR YF L L+PLY WSE D R++ +A A+PGVRVVRQDP EC+FSFICSSNNNIPRITLML +LR YG L+ V L + +L + + L+ +SFPT+ ALA AT+ +LR MG GYRAKYI E+ K + + GG ++ +R + V+++L+ G+G KV
Sbjct: 201 WTDLRISPDELRPSATLTTGQCFNWIVVQSDRNGLPSGDDGGVANMAQKSAWGTHDATEWVGPLRDWVFCIRETSTTTLFRVLH-GTPKGAEEY-------------LRRYFQLETQLVPLYNLWSESDSRLSKIAAAIPGVRVVRQDPKECLFSFICSSNNNIPRITLMLSRLREKYGVHLMEVPARTLDSGGVLRSG------------EKLKIYSFPTLAALAP-ATDIDLRAMGLGYRAKYIAETTKLLNEVGGEDFLFSLRKSNASFVQEELIKFSGIGRKV 460
BLAST of mRNA_H-elongata_contig9176.16632.1 vs. uniprot
Match: A0A7V1M6K3_9BACT (ENDO3c domain-containing protein n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7V1M6K3_9BACT) HSP 1 Score: 185 bits (470), Expect = 5.330e-54 Identity = 107/260 (41.15%), Postives = 142/260 (54.62%), Query Frame = 1
Query: 1 WVDLCVPPEELRPAFSLTIGQCFNWRQAAANCWVGVLGRDVIAIRQTPRTTLFRSLSMSLTKNSEKEDVKRSASAKVAAKLRDYFFLSEPLMPLYQRWSEGDMRMAAVATALPGVRVVRQDPVECIFSFICSSNNNIPRITLMLDKLRHAYGELLLRVGEEGLAATDLLGNDSILIPELEDWTRKPLEFHSFPTVEALAQHATEANLREMGFGYRAKYIVESAKHMIDGGGAEWALRMRATGRDDVRDQLVTLKGVGPKV 780
W L VPPEELR +L GQ F W+ A N W GV+G V+ +RQT + S+ ++A LRDYF L PL PLY++W+E D R A +A A PG+RV+R DPVEC+FSF+CSS NNIPRIT M+D L YGE L+ V +G+A +H FPTV ALA A+E L +GFGYRA+ +V++A+ + D G +W R+R ++ L TL G G K+
Sbjct: 2 WRSLGVPPEELRCDVTLVCGQSFRWKPVAENEWRGVIGSWVVTLRQTAGEVFYHSIP----------------DDEIAPLLRDYFQLHIPLAPLYRQWAEADARFARIAPAFPGLRVLRTDPVECLFSFLCSSANNIPRITRMIDALCQRYGEKLVEV--DGIA------------------------YHRFPTVSALAG-ASEQELFALGFGYRARLVVKAARELSDRG-EDWLYRLRRVPYEEAHRALTTLPGAGHKI 217
BLAST of mRNA_H-elongata_contig9176.16632.1 vs. uniprot
Match: A0A7S2DRB9_9STRA (DNA-(apurinic or apyrimidinic site) lyase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DRB9_9STRA) HSP 1 Score: 187 bits (474), Expect = 9.150e-53 Identity = 114/294 (38.78%), Postives = 159/294 (54.08%), Query Frame = 1
Query: 1 WVDLCVPPEELRPAFSLTIGQCFNWR------------------QAAANC-----------WVGVLGRDVIAIRQTPRTTLFRSLSMSLTKNSEKEDVKRSASAKVAAKLRDYFFLSEPLMPLYQRWSEGDMRMAAVATALPGVRVVRQDPVECIFSFICSSNNNIPRITLMLDKLRHAYGELLLRVG--EEGLAATDLLGNDSILIPELEDWTRKPLEFHSFPTVEALAQHATEANLREMGFGYRAKYIVESAKHMIDGGGAEWALRMR---ATGRDDVRDQLVTLKGVGPKV 780
W DL PPEELR SL GQCFNWR AN WVGV+G V+A+R+T + F L+ ++ K+ ++ ++L D F L PL LY WS D R+A VA A+PG+RV+RQDPVEC+F+FICSSNNNIPRITLM++++R AYG L+ + +G + +D I + + + F+SFP VE +A+ A E R +G GYRA+++ ESA ++ GG W + +R A R+ V ++L GVG KV
Sbjct: 47 WYDLSTPPEELRVTASLATGQCFNWRPIKLPLVSTEKRPTTCASSPPANAIGLEKSDIDFDWVGVVGDRVVALRETGGSVHFACLN--------NKNAKKDQETELRSELEDMFQLEVPLKGLYHSWSRADDRLARVAEAIPGLRVLRQDPVECLFAFICSSNNNIPRITLMMNRIRAAYGTHLMDIAVVSDGGSTKSSSTDDPTRIAQPDTVVHR---FYSFPDVEVMAR-AREEEYRHLGLGYRARFVRESAGSLLSLGGRPWLVGLRDRDAYSREAVLEELKKFTGVGSKV 328
BLAST of mRNA_H-elongata_contig9176.16632.1 vs. uniprot
Match: A0A7S1DH58_HEMAN (DNA-(apurinic or apyrimidinic site) lyase (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DH58_HEMAN) HSP 1 Score: 176 bits (445), Expect = 4.220e-50 Identity = 102/260 (39.23%), Postives = 139/260 (53.46%), Query Frame = 1
Query: 1 WVDLCVPPEELRPAFSLTIGQCFNWRQAAANCWVGVLGRDVIAIRQTPRTTLFRSLSMSLTKNSEKEDVKRSASAKVAAKLRDYFFLSEPLMPLYQRWSEGDMRMAAVATALPGVRVVRQDPVECIFSFICSSNNNIPRITLMLDKLRHAYGELLLRVGEEGLAATDLLGNDSILIPELEDWTRKPLEFHSFPTVEALAQHATEANLREMGFGYRAKYIVESAKHMIDGGGAEWALRMRATGRDDVRDQLVTLKGVGPKV 780
W L P ELR +L GQ F WR N W GV+ ++++RQTP K + S ++ A + D F L PL+PLY+ WS+ D + +A PG+RV+RQDPVEC+FSFICSSNNNI RITLM++++ YGE L G G G+ F+ FPTVEAL++ +E LR +G GYRAK+IV++A ++D GG W + +R + R+ L L GVG KV
Sbjct: 30 WAPLGAAPAELRLDVTLVCGQNFRWRATGDNEWTGVVADTMVSVRQTPTDVYVTEWGAGGRKG--------APSKELMASVADLFHLKVPLVPLYETWSKADPKCELLAVGYPGLRVMRQDPVECLFSFICSSNNNIARITLMIERISEKYGEAL---GTHG-------GHS----------------FYKFPTVEALSK-VSEEELRALGMGYRAKFIVKTAAILLDKGGRGWLMGLRELPHMEAREALEELHGVGSKV 254
BLAST of mRNA_H-elongata_contig9176.16632.1 vs. uniprot
Match: A0A7R9U9U2_9STRA (DNA-(apurinic or apyrimidinic site) lyase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U9U2_9STRA) HSP 1 Score: 178 bits (451), Expect = 8.710e-50 Identity = 115/279 (41.22%), Postives = 152/279 (54.48%), Query Frame = 1
Query: 7 DLCVPPEELRPAFSLTIGQCFNWRQAAA--------------------NCWVGVLGRDVIAIRQTPRTTLFRSLSMSLTKNSEKEDVKRSASAKVAAKLRDYFFLSEP-LMPLYQRWSEGDMRMAAVATALPGVRVVRQDPVECIFSFICSSNNNIPRITLMLDKLRHAYGELLLRVGEEGLAATDLLGNDSILIPELEDWTRKPLEFHSFPTVEALAQHATEANLREMGFGYRAKYIVESAKHMIDGGGAEWALRMRATGRDDVRDQLVTLKGVGPKV 780
DL V PEELR L GQ F+WR A + W+GV+ DV +++TP TTL L+ + T A+ KLRDY L + L LY WS D R+AAVA LPG+RV+RQDP+EC+ SFICSSNNNI RI LML +LR G R+G + ++P+ + +E HSFPTV+ +++ TE LREMGFGYRAKYIV + + + + GG E R+R+ R +V+ QL+ GVGPKV
Sbjct: 57 DLQVAPEELRINDVLPTGQVFHWRPLPATAAVDKSAAEDAGAKGSEVVDAWIGVVDLDVFVLKETPETTLAACLTSADT-------------ARWRRKLRDYLNLEKGRLRELYALWSSVDDRLAAVAACLPGIRVLRQDPLECLLSFICSSNNNIARIQLMLGRLREECGT---RLG-------------TFMLPDGNE-----VEMHSFPTVQQMSK-LTEQRLREMGFGYRAKYIVGTVQMLSEQGGTEHLTRLRSMPRPEVKSQLLEYPGVGPKV 300 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig9176.16632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig9176.16632.1 >prot_H-elongata_contig9176.16632.1 ID=prot_H-elongata_contig9176.16632.1|Name=mRNA_H-elongata_contig9176.16632.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=264bp WVDLCVPPEELRPAFSLTIGQCFNWRQAAANCWVGVLGRDVIAIRQTPRTback to top mRNA from alignment at H-elongata_contig9176:106..2059- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig9176.16632.1 ID=mRNA_H-elongata_contig9176.16632.1|Name=mRNA_H-elongata_contig9176.16632.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1954bp|location=Sequence derived from alignment at H-elongata_contig9176:106..2059- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig9176:106..2059- >mRNA_H-elongata_contig9176.16632.1 ID=mRNA_H-elongata_contig9176.16632.1|Name=mRNA_H-elongata_contig9176.16632.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1584bp|location=Sequence derived from alignment at H-elongata_contig9176:106..2059- (Himanthalia elongata Himel1 dioecious)back to top |