mRNA_H-elongata_contig8976.16472.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig8976.16472.1 vs. uniprot
Match: D7FXD3_ECTSI (DDE-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXD3_ECTSI) HSP 1 Score: 338 bits (867), Expect = 9.090e-115 Identity = 167/234 (71.37%), Postives = 191/234 (81.62%), Query Frame = 3
Query: 57 VFAERNPCASDELPMNGEELSSEQLESVTAEVFQELGNMDQTPVQHEMPVETTLEKRGAKDDRISTGGKEKELFTLCLAAMVDGRKVPLRIIFKGTPFNPPNKPGKGKRTQLRKGSIATEVDPGNRTKFGHPAAGISFGVQENSWCDARERTLWISESWRLRPNNGSIITQRPSIMVLDDFKCHCDEAFMADLRKR*NTSVILIPGGLTPLLQPLDRMLNKQMKWLLRGKYTAY 758
++A RNP A E P+ GE+L+SEQLESVTAEVF ELGNMDQTPVQHEMPVET+LEK GAKD RI+TGGKEKE FTLCLA D +KVPLR IFKGTP PP++PGKGK TQ RK SIA E+ P NR+K G+P G+SFGVQE SWCD RE LWI SW LRPNNGS++ QRP I+VLDDFKCH D+ F+A+L+++ NT VI IPGGLTPLLQPLDRMLNK+MK LLRG YT Y
Sbjct: 20 IYARRNPPAPGESPIKGEDLTSEQLESVTAEVFVELGNMDQTPVQHEMPVETSLEKTGAKDARIATGGKEKERFTLCLAVTGDCKKVPLRTIFKGTPLIPPDRPGKGKATQPRKNSIAWEMLPENRSKNGYPVGGMSFGVQEKSWCDLRECKLWIKHSWTLRPNNGSLVKQRPCILVLDDFKCHKDDTFIAELKRQANTIVIFIPGGLTPLLQPLDRMLNKRMKRLLRGMYTNY 253
BLAST of mRNA_H-elongata_contig8976.16472.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE) HSP 1 Score: 332 bits (851), Expect = 5.300e-110 Identity = 168/234 (71.79%), Postives = 187/234 (79.91%), Query Frame = 3
Query: 57 VFAERNPCASDELPMNGEELSSEQLESVTAEVFQELGNMDQTPVQHEMPVETTLEKRGAKDDRISTGGKEKELFTLCLAAMVDGRKVPLRIIFKGTPFNPPNKPGKGKRTQLRKGSIATEVDPGNRTKFGHPAAGISFGVQENSWCDARERTLWISESWRLRPNNGSIITQRPSIMVLDDFKCHCDEAFMADLRKR*NTSVILIPGGLTPLLQPLDRMLNKQMKWLLRGKYTAY 758
++A R+P A DE P+ GE+L+ EQL SV AEVF+ELGNMDQTPVQHEMPVETTLEK GAKD RISTGGKEKE FTL LA M DG+KV RIIFKGTPF PP GKGK T RK S+A E+ P NR K HPA G+SFGVQE SW D RE WIS SW+LRPNNGSI+ QRP I+VLDDFKCH DE ++A L++ NT VI+IPGGLTPLLQPLDRMLNKQMK LLRGKYTAY
Sbjct: 82 IYARRHPPAPDESPIKGEDLTFEQLASVEAEVFKELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAWEIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAY 315
BLAST of mRNA_H-elongata_contig8976.16472.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE) HSP 1 Score: 332 bits (852), Expect = 1.660e-109 Identity = 168/234 (71.79%), Postives = 186/234 (79.49%), Query Frame = 3
Query: 57 VFAERNPCASDELPMNGEELSSEQLESVTAEVFQELGNMDQTPVQHEMPVETTLEKRGAKDDRISTGGKEKELFTLCLAAMVDGRKVPLRIIFKGTPFNPPNKPGKGKRTQLRKGSIATEVDPGNRTKFGHPAAGISFGVQENSWCDARERTLWISESWRLRPNNGSIITQRPSIMVLDDFKCHCDEAFMADLRKR*NTSVILIPGGLTPLLQPLDRMLNKQMKWLLRGKYTAY 758
++A R+P A DE P+ GE+L+SEQL SV AEVF+ELGNMDQTPVQHE+PVETTLEK GAKD RISTGGKEKE FTL LA M DG+KV RIIFKGTPF PP GKGK T RK S+A E+ P NR K GHPA G+SFGVQE SW D RE WIS SW+LRPNNGSI+ QRP I+VLDDFKCH DE F+A L++ NT VI IPG LTPLLQPLDRMLNKQMK LLR KYTAY
Sbjct: 82 IYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEIPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYTAY 315
BLAST of mRNA_H-elongata_contig8976.16472.1 vs. uniprot
Match: A0A6H5KII4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII4_9PHAE) HSP 1 Score: 326 bits (835), Expect = 2.300e-107 Identity = 164/234 (70.09%), Postives = 184/234 (78.63%), Query Frame = 3
Query: 57 VFAERNPCASDELPMNGEELSSEQLESVTAEVFQELGNMDQTPVQHEMPVETTLEKRGAKDDRISTGGKEKELFTLCLAAMVDGRKVPLRIIFKGTPFNPPNKPGKGKRTQLRKGSIATEVDPGNRTKFGHPAAGISFGVQENSWCDARERTLWISESWRLRPNNGSIITQRPSIMVLDDFKCHCDEAFMADLRKR*NTSVILIPGGLTPLLQPLDRMLNKQMKWLLRGKYTAY 758
++A R+P A DE P+ GE+L+SEQL SV AEVF++LGNMDQTPVQHEMPVETTLEK GAKD R+STGG+EKE FTL LA DG+KV LRIIF GTPF PP GKGK T RK S+A E+ P NR K GHPA G+SFGVQE SW D RE W S SW+LRPNNGSI+ QRP I+VLDDFKCH DE F+A L++ NT VI IPGGLTPLLQPLDRMLNKQ K LLR KYTAY
Sbjct: 16 IYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEDLGNMDQTPVQHEMPVETTLEKTGAKDARVSTGGEEKERFTLVLAVTADGKKVSLRIIFMGTPFIPPTVSGKGKSTLPRKNSVAWEMHPTNRAKHGHPANGMSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQTKRLLRSKYTAY 249
BLAST of mRNA_H-elongata_contig8976.16472.1 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE) HSP 1 Score: 333 bits (854), Expect = 2.740e-103 Identity = 166/234 (70.94%), Postives = 186/234 (79.49%), Query Frame = 3
Query: 57 VFAERNPCASDELPMNGEELSSEQLESVTAEVFQELGNMDQTPVQHEMPVETTLEKRGAKDDRISTGGKEKELFTLCLAAMVDGRKVPLRIIFKGTPFNPPNKPGKGKRTQLRKGSIATEVDPGNRTKFGHPAAGISFGVQENSWCDARERTLWISESWRLRPNNGSIITQRPSIMVLDDFKCHCDEAFMADLRKR*NTSVILIPGGLTPLLQPLDRMLNKQMKWLLRGKYTAY 758
++A+R P A E P+ GE+LSS QLE VT E+F+ELGNMDQTPVQHEMPVETTLE GAKD RI+TGGKEKE FTLCLA DG+KVPLRIIFKGTPF PP PGKGK TQ RK SIA EV P NR+K G P G+SFGVQE SWCD RE LWI +SW+LRPNNGSI+ QR I+VLDDFKCH D+ F+A L++ NT VI IPGGL PL QPLDRMLNKQMK LLRG YTA+
Sbjct: 236 IYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHEMPVETTLENTGAKDARIATGGKEKERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLIPLFQPLDRMLNKQMKRLLRGMYTAH 469
BLAST of mRNA_H-elongata_contig8976.16472.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE) HSP 1 Score: 320 bits (819), Expect = 3.340e-103 Identity = 166/260 (63.85%), Postives = 188/260 (72.31%), Query Frame = 3
Query: 57 VFAERNPCASDELPMNGEELSSEQLESVTAEVFQELGNMDQTPVQHEMPVETTLEKRGAKDDRISTG--------------------------GKEKELFTLCLAAMVDGRKVPLRIIFKGTPFNPPNKPGKGKRTQLRKGSIATEVDPGNRTKFGHPAAGISFGVQENSWCDARERTLWISESWRLRPNNGSIITQRPSIMVLDDFKCHCDEAFMADLRKR*NTSVILIPGGLTPLLQPLDRMLNKQMKWLLRGKYTAY 758
++A+R P A E P+ GE+LSS QLE VT E+F++LGNMDQTPVQ+EMPVETTLEK GAKD RI+TG GKEKE FTLCLA DG KVPLRIIFKGTPF PP PGKGK TQ RK SIA EV P NR+K G P G+SFGVQE SWCD RE LWI +SW+LRPNNGS++ QR I+VLDDFKCH D+ F+A L++ NT VI IPGGLTPLLQPLDRMLNKQMK LLRG YTA+
Sbjct: 169 IYAQRYPPAPGESPIRGEDLSSSQLELVTDELFKDLGNMDQTPVQYEMPVETTLEKTGAKDARIATGAGVCCIRTILKPLPYPPTSCILPPPPGKEKERFTLCLAVSADGTKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAH 428
BLAST of mRNA_H-elongata_contig8976.16472.1 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE) HSP 1 Score: 322 bits (826), Expect = 4.730e-103 Identity = 164/235 (69.79%), Postives = 185/235 (78.72%), Query Frame = 3
Query: 57 VFAERNPCASDELPMNGEELSSEQLESVTAEVFQELGNMDQTPVQHEMPVETTLEKRGAKDDRISTGG-KEKELFTLCLAAMVDGRKVPLRIIFKGTPFNPPNKPGKGKRTQLRKGSIATEVDPGNRTKFGHPAAGISFGVQENSWCDARERTLWISESWRLRPNNGSIITQRPSIMVLDDFKCHCDEAFMADLRKR*NTSVILIPGGLTPLLQPLDRMLNKQMKWLLRGKYTAY 758
++A R+P A DE P+ GE+L+SEQL SV AEVF+E+GNMDQ PVQHEMPVETTL+K GAKD RISTGG EKE FTL LA DG+KV RIIF+GTPF PP GKGK T+ RK +A E+ P NR K GHPA G+SFGVQE SW D RE WIS SW+LRPNNGSI+ QRP I+VLDDFKCH DE F+A L++ NT VI IPGGLTPLLQPLDRMLNKQMK LLRGKYTAY
Sbjct: 276 IYARRHPPAPDESPIKGEDLNSEQLASVEAEVFEEVGNMDQMPVQHEMPVETTLDKTGAKDARISTGGGNEKERFTLVLAVTADGKKVSPRIIFEGTPFIPPTVSGKGKSTRPRKNPVAWEMHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPRILVLDDFKCHNDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAY 510
BLAST of mRNA_H-elongata_contig8976.16472.1 vs. uniprot
Match: A0A6H5K583_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K583_9PHAE) HSP 1 Score: 326 bits (835), Expect = 9.810e-101 Identity = 162/229 (70.74%), Postives = 187/229 (81.66%), Query Frame = 3
Query: 57 VFAERNPCASDELPMNGEELSSEQLESVTAEVFQELGNMDQTPVQHEMPVETTLEKRGAKDDRISTGGKEKELFTLCLAAMVDGRKVPLRIIFKGTPFNPPNKPGKGKRTQLRKGSIATEVDPGNRTKFGHPAAGISFGVQENSWCDARERTLWISESWRLRPNNGSIITQRPSIMVLDDFKCHCDEAFMADLRKR*NTSVILIPGGLTPLLQPLDRMLNKQMKWLLRG 743
++A RNP AS E P+ G++L+ QLESV A+VF+ELGNMDQTPVQ EMPVETTLEKRG KD RISTGGKEK+ FT CLA M DG KVP RIIFKG PF PP+ G+ K TQ RKG IA EV NRTKFG+P +G+ F VQE SWCDARE TLW+SESWR RPN+GS+I QR SI+VLDDF+CH E+F+ DLR+R NT+VILIPGGLTPLLQPLDRMLNK+MK L+RG
Sbjct: 151 IYARRNPPASGESPIKGKDLTPAQLESVAAKVFEELGNMDQTPVQQEMPVETTLEKRGVKDARISTGGKEKDRFTPCLAVMADGGKVPQRIIFKGKPFIPPSTAGREKNTQTRKGYIAAEVLLANRTKFGYPVSGMFFVVQEKSWCDARECTLWLSESWRFRPNHGSVIKQRHSILVLDDFRCHRSESFVKDLRRRTNTTVILIPGGLTPLLQPLDRMLNKEMKRLMRG 379
BLAST of mRNA_H-elongata_contig8976.16472.1 vs. uniprot
Match: A0A6H5JTG5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTG5_9PHAE) HSP 1 Score: 313 bits (802), Expect = 3.340e-100 Identity = 164/242 (67.77%), Postives = 180/242 (74.38%), Query Frame = 3
Query: 57 VFAERNPCASDELPMNGEELSSEQLESVTAEVFQELGNMDQTPVQHEMPVETTLEKRGAKDDRISTGGKEKELFTLCLAAMVDGRKVPLRIIFKGTPFNPPNKPGKGKRTQLRKGSIATEVDPGNRTKFGHPAAGISFGVQENSWCDARERTLWISESWRL--------RPNNGSIITQRPSIMVLDDFKCHCDEAFMADLRKR*NTSVILIPGGLTPLLQPLDRMLNKQMKWLLRGKYTAY 758
++A R+P A DE P+ GE+L+SEQ SV AEVF+ELGNMDQTPVQHEMPVETTLE G KD RISTGGKEKE FTL LA M DG+ V IIFKGTPF PP GKGK T RK S+A EV P NR K GHPA G+SFGVQE SW +E WI SW+L RPNNGSI+ QRP I+VLDDFKCH DE F+A L + NT VI IPGGLTPLLQPLDRMLNKQMK LLRGKYTAY
Sbjct: 236 IYARRHPPAPDESPIKGEDLTSEQPASVEAEVFEELGNMDQTPVQHEMPVETTLEDTGGKDARISTGGKEKERFTLVLAVMADGKMVSPCIIFKGTPFIPPTVSGKGKSTLPRKNSVAWEVHPANRAKHGHPANGMSFGVQEKSWSGQQECNGWIPGSWKLCPNNGSMXRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALNRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAY 477
BLAST of mRNA_H-elongata_contig8976.16472.1 vs. uniprot
Match: A0A6H5JQM5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM5_9PHAE) HSP 1 Score: 306 bits (784), Expect = 1.090e-97 Identity = 158/234 (67.52%), Postives = 180/234 (76.92%), Query Frame = 3
Query: 57 VFAERNPCASDELPMNGEELSSEQLESVTAEVFQELGNMDQTPVQHEMPVETTLEKRGAKDDRISTGGKEKELFTLCLAAMVDGRKVPLRIIFKGTPFNPPNKPGKGKRTQLRKGSIATEVDPGNRTKFGHPAAGISFGVQENSWCDARERTLWISESWRLRPNNGSIITQRPSIMVLDDFKCHCDEAFMADLRKR*NTSVILIPGGLTPLLQPLDRMLNKQMKWLLRGKYTAY 758
++A RNP AS E P+ G++LS QLESV EVF+ELGNMDQTPVQ EMPVETTLEK GAKD RISTGGKEKE FTLCLA M DG KVPLRIIFKG PF PP+ +GK TQ RKGSIA EV P N+T FG+P +G+SFGVQE SW DA E TLW+SESW RPN+GS+I QR SI+VLDDF+ NT+VILIPGGLTPLLQPLDRML+K+MK L+R +YT Y
Sbjct: 255 IYARRNPPASGESPIKGKDLSPAQLESVATEVFEELGNMDQTPVQQEMPVETTLEKGGAKDARISTGGKEKERFTLCLAVMADGGKVPLRIIFKGKPFIPPSTARRGKNTQPRKGSIAAEVLPANQTNFGYPVSGMSFGVQERSWYDACECTLWLSESWGFRPNHGSVIKQRHSILVLDDFRT--------------NTTVILIPGGLTPLLQPLDRMLDKEMKRLMRRRYTQY 474 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8976.16472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig8976.16472.1 >prot_H-elongata_contig8976.16472.1 ID=prot_H-elongata_contig8976.16472.1|Name=mRNA_H-elongata_contig8976.16472.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=143bp MIASAQEVRRRSSSLSVLLPWWTAGRFRYASSSKARRSTRRTSRGRARELback to top mRNA from alignment at H-elongata_contig8976:5581..6564- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig8976.16472.1 ID=mRNA_H-elongata_contig8976.16472.1|Name=mRNA_H-elongata_contig8976.16472.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=984bp|location=Sequence derived from alignment at H-elongata_contig8976:5581..6564- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig8976:5581..6564- >mRNA_H-elongata_contig8976.16472.1 ID=mRNA_H-elongata_contig8976.16472.1|Name=mRNA_H-elongata_contig8976.16472.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=858bp|location=Sequence derived from alignment at H-elongata_contig8976:5581..6564- (Himanthalia elongata Himel1 dioecious)back to top |