mRNA_H-elongata_contig8976.16472.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8976.16472.1
Unique NamemRNA_H-elongata_contig8976.16472.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig8976.16472.1 vs. uniprot
Match: D7FXD3_ECTSI (DDE-1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXD3_ECTSI)

HSP 1 Score: 338 bits (867), Expect = 9.090e-115
Identity = 167/234 (71.37%), Postives = 191/234 (81.62%), Query Frame = 3
Query:   57 VFAERNPCASDELPMNGEELSSEQLESVTAEVFQELGNMDQTPVQHEMPVETTLEKRGAKDDRISTGGKEKELFTLCLAAMVDGRKVPLRIIFKGTPFNPPNKPGKGKRTQLRKGSIATEVDPGNRTKFGHPAAGISFGVQENSWCDARERTLWISESWRLRPNNGSIITQRPSIMVLDDFKCHCDEAFMADLRKR*NTSVILIPGGLTPLLQPLDRMLNKQMKWLLRGKYTAY 758
            ++A RNP A  E P+ GE+L+SEQLESVTAEVF ELGNMDQTPVQHEMPVET+LEK GAKD RI+TGGKEKE FTLCLA   D +KVPLR IFKGTP  PP++PGKGK TQ RK SIA E+ P NR+K G+P  G+SFGVQE SWCD RE  LWI  SW LRPNNGS++ QRP I+VLDDFKCH D+ F+A+L+++ NT VI IPGGLTPLLQPLDRMLNK+MK LLRG YT Y
Sbjct:   20 IYARRNPPAPGESPIKGEDLTSEQLESVTAEVFVELGNMDQTPVQHEMPVETSLEKTGAKDARIATGGKEKERFTLCLAVTGDCKKVPLRTIFKGTPLIPPDRPGKGKATQPRKNSIAWEMLPENRSKNGYPVGGMSFGVQEKSWCDLRECKLWIKHSWTLRPNNGSLVKQRPCILVLDDFKCHKDDTFIAELKRQANTIVIFIPGGLTPLLQPLDRMLNKRMKRLLRGMYTNY 253          
BLAST of mRNA_H-elongata_contig8976.16472.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 332 bits (851), Expect = 5.300e-110
Identity = 168/234 (71.79%), Postives = 187/234 (79.91%), Query Frame = 3
Query:   57 VFAERNPCASDELPMNGEELSSEQLESVTAEVFQELGNMDQTPVQHEMPVETTLEKRGAKDDRISTGGKEKELFTLCLAAMVDGRKVPLRIIFKGTPFNPPNKPGKGKRTQLRKGSIATEVDPGNRTKFGHPAAGISFGVQENSWCDARERTLWISESWRLRPNNGSIITQRPSIMVLDDFKCHCDEAFMADLRKR*NTSVILIPGGLTPLLQPLDRMLNKQMKWLLRGKYTAY 758
            ++A R+P A DE P+ GE+L+ EQL SV AEVF+ELGNMDQTPVQHEMPVETTLEK GAKD RISTGGKEKE FTL LA M DG+KV  RIIFKGTPF PP   GKGK T  RK S+A E+ P NR K  HPA G+SFGVQE SW D RE   WIS SW+LRPNNGSI+ QRP I+VLDDFKCH DE ++A L++  NT VI+IPGGLTPLLQPLDRMLNKQMK LLRGKYTAY
Sbjct:   82 IYARRHPPAPDESPIKGEDLTFEQLASVEAEVFKELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAWEIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAY 315          
BLAST of mRNA_H-elongata_contig8976.16472.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 332 bits (852), Expect = 1.660e-109
Identity = 168/234 (71.79%), Postives = 186/234 (79.49%), Query Frame = 3
Query:   57 VFAERNPCASDELPMNGEELSSEQLESVTAEVFQELGNMDQTPVQHEMPVETTLEKRGAKDDRISTGGKEKELFTLCLAAMVDGRKVPLRIIFKGTPFNPPNKPGKGKRTQLRKGSIATEVDPGNRTKFGHPAAGISFGVQENSWCDARERTLWISESWRLRPNNGSIITQRPSIMVLDDFKCHCDEAFMADLRKR*NTSVILIPGGLTPLLQPLDRMLNKQMKWLLRGKYTAY 758
            ++A R+P A DE P+ GE+L+SEQL SV AEVF+ELGNMDQTPVQHE+PVETTLEK GAKD RISTGGKEKE FTL LA M DG+KV  RIIFKGTPF PP   GKGK T  RK S+A E+ P NR K GHPA G+SFGVQE SW D RE   WIS SW+LRPNNGSI+ QRP I+VLDDFKCH DE F+A L++  NT VI IPG LTPLLQPLDRMLNKQMK LLR KYTAY
Sbjct:   82 IYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEIPVETTLEKTGAKDARISTGGKEKERFTLVLAVMADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYTAY 315          
BLAST of mRNA_H-elongata_contig8976.16472.1 vs. uniprot
Match: A0A6H5KII4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII4_9PHAE)

HSP 1 Score: 326 bits (835), Expect = 2.300e-107
Identity = 164/234 (70.09%), Postives = 184/234 (78.63%), Query Frame = 3
Query:   57 VFAERNPCASDELPMNGEELSSEQLESVTAEVFQELGNMDQTPVQHEMPVETTLEKRGAKDDRISTGGKEKELFTLCLAAMVDGRKVPLRIIFKGTPFNPPNKPGKGKRTQLRKGSIATEVDPGNRTKFGHPAAGISFGVQENSWCDARERTLWISESWRLRPNNGSIITQRPSIMVLDDFKCHCDEAFMADLRKR*NTSVILIPGGLTPLLQPLDRMLNKQMKWLLRGKYTAY 758
            ++A R+P A DE P+ GE+L+SEQL SV AEVF++LGNMDQTPVQHEMPVETTLEK GAKD R+STGG+EKE FTL LA   DG+KV LRIIF GTPF PP   GKGK T  RK S+A E+ P NR K GHPA G+SFGVQE SW D RE   W S SW+LRPNNGSI+ QRP I+VLDDFKCH DE F+A L++  NT VI IPGGLTPLLQPLDRMLNKQ K LLR KYTAY
Sbjct:   16 IYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEDLGNMDQTPVQHEMPVETTLEKTGAKDARVSTGGEEKERFTLVLAVTADGKKVSLRIIFMGTPFIPPTVSGKGKSTLPRKNSVAWEMHPTNRAKHGHPANGMSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQTKRLLRSKYTAY 249          
BLAST of mRNA_H-elongata_contig8976.16472.1 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE)

HSP 1 Score: 333 bits (854), Expect = 2.740e-103
Identity = 166/234 (70.94%), Postives = 186/234 (79.49%), Query Frame = 3
Query:   57 VFAERNPCASDELPMNGEELSSEQLESVTAEVFQELGNMDQTPVQHEMPVETTLEKRGAKDDRISTGGKEKELFTLCLAAMVDGRKVPLRIIFKGTPFNPPNKPGKGKRTQLRKGSIATEVDPGNRTKFGHPAAGISFGVQENSWCDARERTLWISESWRLRPNNGSIITQRPSIMVLDDFKCHCDEAFMADLRKR*NTSVILIPGGLTPLLQPLDRMLNKQMKWLLRGKYTAY 758
            ++A+R P A  E P+ GE+LSS QLE VT E+F+ELGNMDQTPVQHEMPVETTLE  GAKD RI+TGGKEKE FTLCLA   DG+KVPLRIIFKGTPF PP  PGKGK TQ RK SIA EV P NR+K G P  G+SFGVQE SWCD RE  LWI +SW+LRPNNGSI+ QR  I+VLDDFKCH D+ F+A L++  NT VI IPGGL PL QPLDRMLNKQMK LLRG YTA+
Sbjct:  236 IYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHEMPVETTLENTGAKDARIATGGKEKERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLIPLFQPLDRMLNKQMKRLLRGMYTAH 469          
BLAST of mRNA_H-elongata_contig8976.16472.1 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 320 bits (819), Expect = 3.340e-103
Identity = 166/260 (63.85%), Postives = 188/260 (72.31%), Query Frame = 3
Query:   57 VFAERNPCASDELPMNGEELSSEQLESVTAEVFQELGNMDQTPVQHEMPVETTLEKRGAKDDRISTG--------------------------GKEKELFTLCLAAMVDGRKVPLRIIFKGTPFNPPNKPGKGKRTQLRKGSIATEVDPGNRTKFGHPAAGISFGVQENSWCDARERTLWISESWRLRPNNGSIITQRPSIMVLDDFKCHCDEAFMADLRKR*NTSVILIPGGLTPLLQPLDRMLNKQMKWLLRGKYTAY 758
            ++A+R P A  E P+ GE+LSS QLE VT E+F++LGNMDQTPVQ+EMPVETTLEK GAKD RI+TG                          GKEKE FTLCLA   DG KVPLRIIFKGTPF PP  PGKGK TQ RK SIA EV P NR+K G P  G+SFGVQE SWCD RE  LWI +SW+LRPNNGS++ QR  I+VLDDFKCH D+ F+A L++  NT VI IPGGLTPLLQPLDRMLNKQMK LLRG YTA+
Sbjct:  169 IYAQRYPPAPGESPIRGEDLSSSQLELVTDELFKDLGNMDQTPVQYEMPVETTLEKTGAKDARIATGAGVCCIRTILKPLPYPPTSCILPPPPGKEKERFTLCLAVSADGTKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVRQRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTAH 428          
BLAST of mRNA_H-elongata_contig8976.16472.1 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE)

HSP 1 Score: 322 bits (826), Expect = 4.730e-103
Identity = 164/235 (69.79%), Postives = 185/235 (78.72%), Query Frame = 3
Query:   57 VFAERNPCASDELPMNGEELSSEQLESVTAEVFQELGNMDQTPVQHEMPVETTLEKRGAKDDRISTGG-KEKELFTLCLAAMVDGRKVPLRIIFKGTPFNPPNKPGKGKRTQLRKGSIATEVDPGNRTKFGHPAAGISFGVQENSWCDARERTLWISESWRLRPNNGSIITQRPSIMVLDDFKCHCDEAFMADLRKR*NTSVILIPGGLTPLLQPLDRMLNKQMKWLLRGKYTAY 758
            ++A R+P A DE P+ GE+L+SEQL SV AEVF+E+GNMDQ PVQHEMPVETTL+K GAKD RISTGG  EKE FTL LA   DG+KV  RIIF+GTPF PP   GKGK T+ RK  +A E+ P NR K GHPA G+SFGVQE SW D RE   WIS SW+LRPNNGSI+ QRP I+VLDDFKCH DE F+A L++  NT VI IPGGLTPLLQPLDRMLNKQMK LLRGKYTAY
Sbjct:  276 IYARRHPPAPDESPIKGEDLNSEQLASVEAEVFEEVGNMDQMPVQHEMPVETTLDKTGAKDARISTGGGNEKERFTLVLAVTADGKKVSPRIIFEGTPFIPPTVSGKGKSTRPRKNPVAWEMHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPRILVLDDFKCHNDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAY 510          
BLAST of mRNA_H-elongata_contig8976.16472.1 vs. uniprot
Match: A0A6H5K583_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K583_9PHAE)

HSP 1 Score: 326 bits (835), Expect = 9.810e-101
Identity = 162/229 (70.74%), Postives = 187/229 (81.66%), Query Frame = 3
Query:   57 VFAERNPCASDELPMNGEELSSEQLESVTAEVFQELGNMDQTPVQHEMPVETTLEKRGAKDDRISTGGKEKELFTLCLAAMVDGRKVPLRIIFKGTPFNPPNKPGKGKRTQLRKGSIATEVDPGNRTKFGHPAAGISFGVQENSWCDARERTLWISESWRLRPNNGSIITQRPSIMVLDDFKCHCDEAFMADLRKR*NTSVILIPGGLTPLLQPLDRMLNKQMKWLLRG 743
            ++A RNP AS E P+ G++L+  QLESV A+VF+ELGNMDQTPVQ EMPVETTLEKRG KD RISTGGKEK+ FT CLA M DG KVP RIIFKG PF PP+  G+ K TQ RKG IA EV   NRTKFG+P +G+ F VQE SWCDARE TLW+SESWR RPN+GS+I QR SI+VLDDF+CH  E+F+ DLR+R NT+VILIPGGLTPLLQPLDRMLNK+MK L+RG
Sbjct:  151 IYARRNPPASGESPIKGKDLTPAQLESVAAKVFEELGNMDQTPVQQEMPVETTLEKRGVKDARISTGGKEKDRFTPCLAVMADGGKVPQRIIFKGKPFIPPSTAGREKNTQTRKGYIAAEVLLANRTKFGYPVSGMFFVVQEKSWCDARECTLWLSESWRFRPNHGSVIKQRHSILVLDDFRCHRSESFVKDLRRRTNTTVILIPGGLTPLLQPLDRMLNKEMKRLMRG 379          
BLAST of mRNA_H-elongata_contig8976.16472.1 vs. uniprot
Match: A0A6H5JTG5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTG5_9PHAE)

HSP 1 Score: 313 bits (802), Expect = 3.340e-100
Identity = 164/242 (67.77%), Postives = 180/242 (74.38%), Query Frame = 3
Query:   57 VFAERNPCASDELPMNGEELSSEQLESVTAEVFQELGNMDQTPVQHEMPVETTLEKRGAKDDRISTGGKEKELFTLCLAAMVDGRKVPLRIIFKGTPFNPPNKPGKGKRTQLRKGSIATEVDPGNRTKFGHPAAGISFGVQENSWCDARERTLWISESWRL--------RPNNGSIITQRPSIMVLDDFKCHCDEAFMADLRKR*NTSVILIPGGLTPLLQPLDRMLNKQMKWLLRGKYTAY 758
            ++A R+P A DE P+ GE+L+SEQ  SV AEVF+ELGNMDQTPVQHEMPVETTLE  G KD RISTGGKEKE FTL LA M DG+ V   IIFKGTPF PP   GKGK T  RK S+A EV P NR K GHPA G+SFGVQE SW   +E   WI  SW+L        RPNNGSI+ QRP I+VLDDFKCH DE F+A L +  NT VI IPGGLTPLLQPLDRMLNKQMK LLRGKYTAY
Sbjct:  236 IYARRHPPAPDESPIKGEDLTSEQPASVEAEVFEELGNMDQTPVQHEMPVETTLEDTGGKDARISTGGKEKERFTLVLAVMADGKMVSPCIIFKGTPFIPPTVSGKGKSTLPRKNSVAWEVHPANRAKHGHPANGMSFGVQEKSWSGQQECNGWIPGSWKLCPNNGSMXRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALNRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAY 477          
BLAST of mRNA_H-elongata_contig8976.16472.1 vs. uniprot
Match: A0A6H5JQM5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM5_9PHAE)

HSP 1 Score: 306 bits (784), Expect = 1.090e-97
Identity = 158/234 (67.52%), Postives = 180/234 (76.92%), Query Frame = 3
Query:   57 VFAERNPCASDELPMNGEELSSEQLESVTAEVFQELGNMDQTPVQHEMPVETTLEKRGAKDDRISTGGKEKELFTLCLAAMVDGRKVPLRIIFKGTPFNPPNKPGKGKRTQLRKGSIATEVDPGNRTKFGHPAAGISFGVQENSWCDARERTLWISESWRLRPNNGSIITQRPSIMVLDDFKCHCDEAFMADLRKR*NTSVILIPGGLTPLLQPLDRMLNKQMKWLLRGKYTAY 758
            ++A RNP AS E P+ G++LS  QLESV  EVF+ELGNMDQTPVQ EMPVETTLEK GAKD RISTGGKEKE FTLCLA M DG KVPLRIIFKG PF PP+   +GK TQ RKGSIA EV P N+T FG+P +G+SFGVQE SW DA E TLW+SESW  RPN+GS+I QR SI+VLDDF+               NT+VILIPGGLTPLLQPLDRML+K+MK L+R +YT Y
Sbjct:  255 IYARRNPPASGESPIKGKDLSPAQLESVATEVFEELGNMDQTPVQQEMPVETTLEKGGAKDARISTGGKEKERFTLCLAVMADGGKVPLRIIFKGKPFIPPSTARRGKNTQPRKGSIAAEVLPANQTNFGYPVSGMSFGVQERSWYDACECTLWLSESWGFRPNHGSVIKQRHSILVLDDFRT--------------NTTVILIPGGLTPLLQPLDRMLDKEMKRLMRRRYTQY 474          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8976.16472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXD3_ECTSI9.090e-11571.37DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JUK2_9PHAE5.300e-11071.79DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K6L9_9PHAE1.660e-10971.79DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KII4_9PHAE2.300e-10770.09DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K8Y4_9PHAE2.740e-10370.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE45_9PHAE3.340e-10363.85DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JHT8_9PHAE4.730e-10369.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K583_9PHAE9.810e-10170.74Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JTG5_9PHAE3.340e-10067.77DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JQM5_9PHAE1.090e-9767.52DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8976contigH-elongata_contig8976:5581..6564 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size758
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8976.16472.1prot_H-elongata_contig8976.16472.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8976 5673..6327 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931297.9077713-UTR-H-elongata_contig8976:5580..56721622931297.9077713-UTR-H-elongata_contig8976:5580..5672Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8976 5581..5672 -
1691679778.6463182-UTR-H-elongata_contig8976:5580..56721691679778.6463182-UTR-H-elongata_contig8976:5580..5672Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8976 5581..5672 -
1622931297.968484-UTR-H-elongata_contig8976:6327..65641622931297.968484-UTR-H-elongata_contig8976:6327..6564Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8976 6328..6564 -
1691679778.6702287-UTR-H-elongata_contig8976:6327..65641691679778.6702287-UTR-H-elongata_contig8976:6327..6564Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig8976 6328..6564 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931297.9237392-CDS-H-elongata_contig8976:5672..60801622931297.9237392-CDS-H-elongata_contig8976:5672..6080Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8976 5673..6080 -
1691679778.6540775-CDS-H-elongata_contig8976:5672..60801691679778.6540775-CDS-H-elongata_contig8976:5672..6080Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8976 5673..6080 -
1622931297.9472876-CDS-H-elongata_contig8976:6306..63271622931297.9472876-CDS-H-elongata_contig8976:6306..6327Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8976 6307..6327 -
1691679778.6617723-CDS-H-elongata_contig8976:6306..63271691679778.6617723-CDS-H-elongata_contig8976:6306..6327Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8976 6307..6327 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8976.16472.1

>prot_H-elongata_contig8976.16472.1 ID=prot_H-elongata_contig8976.16472.1|Name=mRNA_H-elongata_contig8976.16472.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=143bp
MIASAQEVRRRSSSLSVLLPWWTAGRFRYASSSKARRSTRRTSRGRAREL
SCGRGPSQQRLTLGIVPSSGTPRRAFRLVCRRIAGVTRGSAPFGSRRAGG
FAPTTEASSRSARASWCWTISSATVMRPSWLTSGRGETPASS*
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mRNA from alignment at H-elongata_contig8976:5581..6564-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8976.16472.1 ID=mRNA_H-elongata_contig8976.16472.1|Name=mRNA_H-elongata_contig8976.16472.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=984bp|location=Sequence derived from alignment at H-elongata_contig8976:5581..6564- (Himanthalia elongata Himel1 dioecious)
ATGGCGTTTGGAACAGTGAAGAAGCTTCGGAAGACTCTCCTGGAGCGCGC TGGATTGTTTTTGCTGAGCGCAACCCATGTGCTTCTGATGAGCTCCCCAT GAACGGGGAGGAGCTGAGTTCCGAGCAGCTGGAGTCGGTAACGGCGGAGG TTTTCCAAGAACTCGGCAATATGGACCAGACACCCGTCCAGCACGAGATG CCGGTGGAAACAACTTTGGAGAAGCGTGGTGCGAAGGATGATCGCATCAG CACAGGAGGTTAGAATATTACGGCTGCGTGCTTGTCGATAGTATGTATTT TGCATCGTTTTAATGTTTTTATTGTACGGTTGCTGCTGCTGCTGCCACAA CGCGATTTTTTTCTCTCTTGATGATAGGTATTTTTGGCACCGTAAAATGA CCCCGCATCGTTAATACAAAGCATAAATCAAAACATGAAACTTTAACCCC CTCCCGCCCTCTTTTTGTGTCGACTACCCCGTAGGTAAGGAGAAGGAGCT CTTCACTCTCTGTCTTGCTGCCATGGTGGACGGCAGGAAGGTTCCGCTAC GCATCATCTTCAAAGGCACGCCGTTCAACCCGCCGAACAAGCCGGGGAAG GGCAAGAGAACTCAGCTGCGGAAGGGGTCCATCGCAACAGAGGTTGACCC TGGGAATCGTACCAAGTTCGGGCACCCCGCGGCGGGCATTTCGTTTGGTG TGCAGGAGAATAGCTGGTGTGACGCGCGGGAGCGCACCCTTTGGATCTCG GAGAGCTGGAGGCTTCGCCCCAACAACGGAAGCATCATCACGCAGCGCCC GAGCATCATGGTGTTGGACGATTTCAAGTGCCACTGTGATGAGGCCTTCA TGGCTGACCTCCGGAAGAGGTGAAACACCAGCGTCATCCTGATCCCGGGC GGGTTGACTCCTCTCCTCCAGCCGCTGGACCGCATGCTCAACAAGCAGAT GAAGTGGCTACTGCGGGGGAAGTACACCGCCTAC
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Coding sequence (CDS) from alignment at H-elongata_contig8976:5581..6564-

>mRNA_H-elongata_contig8976.16472.1 ID=mRNA_H-elongata_contig8976.16472.1|Name=mRNA_H-elongata_contig8976.16472.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=858bp|location=Sequence derived from alignment at H-elongata_contig8976:5581..6564- (Himanthalia elongata Himel1 dioecious)
ATGATCGCATCAGCACAGGAGATGATCGCATCAGCACAGGAGGTAAGGAG
AAGGAGCTCTTCACTCTCTGTCTTGCTGCCATGGTGGACGGCAGGAAGGT
TCCGCTACGCATCATCTTCAAAGGCACGCCGTTCAACCCGCCGAACAAGC
CGGGGAAGGGCAAGAGAACTCAGCTGCGGAAGGGGTCCATCGCAACAGAG
GTTGACCCTGGGAATCGTACCAAGTTCGGGCACCCCGCGGCGGGCATTTC
GTTTGGTGTGCAGGAGAATAGCTGGTGTGACGCGCGGGAGCGCACCCTTT
GGATCTCGGAGAGCTGGAGGCTTCGCCCCAACAACGGAAGCATCATCACG
CAGCGCCCGAGCATCATGGTGTTGGACGATTTCAAGTGCCACTGTGATGA
GGCCTTCATGGCTGACCTCCGGAAGAGGTGAAACACCAGCGTCATCCTGA
GTAAGGAGAAGGAGCTCTTCACTCTCTGTCTTGCTGCCATGGTGGACGGC
AGGAAGGTTCCGCTACGCATCATCTTCAAAGGCACGCCGTTCAACCCGCC
GAACAAGCCGGGGAAGGGCAAGAGAACTCAGCTGCGGAAGGGGTCCATCG
CAACAGAGGTTGACCCTGGGAATCGTACCAAGTTCGGGCACCCCGCGGCG
GGCATTTCGTTTGGTGTGCAGGAGAATAGCTGGTGTGACGCGCGGGAGCG
CACCCTTTGGATCTCGGAGAGCTGGAGGCTTCGCCCCAACAACGGAAGCA
TCATCACGCAGCGCCCGAGCATCATGGTGTTGGACGATTTCAAGTGCCAC
TGTGATGAGGCCTTCATGGCTGACCTCCGGAAGAGGTGAAACACCAGCGT
CATCCTGA
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