mRNA_H-elongata_contig89686.16466.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig89686.16466.1
Unique NamemRNA_H-elongata_contig89686.16466.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig89686.16466.1 vs. uniprot
Match: A0A6H5KFV9_9PHAE (Lipid_desat domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFV9_9PHAE)

HSP 1 Score: 355 bits (912), Expect = 2.180e-119
Identity = 172/246 (69.92%), Postives = 200/246 (81.30%), Query Frame = 1
Query:   40 RRKGTEPELL-EGDRLENTPKMIFLTYASLGLNALYLLQALTTISSPWQAFWTAAAALAGVVIADLVSGVFHWSVDNYGDGNTPVFGTVIEAFQGHHASPWTITHRPFENNVHKITYAVLPLLALLAWANPGPVGAALGVNFLVGSLMSQECHRYAHMTKPPELVQVLQDLGIMVSRREHGQHHASPFEEN-----GVCNGPLDSLQIFRFLERVVYQVYGVEPIAWRLDTAVKEKSLSTGWLPFA 759
            RR G  PE++ EGD L NTPKMI L ++SL LNA+YLLQAL+T++SP +A WTAA A  G  IADLVSGVFHWSVDNYGD +TPVFG VIEAFQGHH SPWTIT+RPFENNVHKI YAVLPLLALL   NPGP G ALGV FLVGSLMS E HR+AHMT PP LV+ LQ  G+ VSR+EHG+HH+SPFEE      G+CNGPLD  ++FRF+ERVVY++ GVEPIAW+LD +VKE +L+T WLPF+
Sbjct:  145 RRPGKAPEVVVEGDLLGNTPKMIVLVWSSLALNAIYLLQALSTVTSPLEALWTAAGAFVGYTIADLVSGVFHWSVDNYGDDSTPVFGAVIEAFQGHHGSPWTITYRPFENNVHKIAYAVLPLLALLRLVNPGPAGVALGVTFLVGSLMSNEFHRFAHMTSPPPLVRALQKFGVTVSRKEHGRHHSSPFEEKYCIVTGICNGPLDHFRVFRFMERVVYELNGVEPIAWKLDPSVKEVALATRWLPFS 390          
BLAST of mRNA_H-elongata_contig89686.16466.1 vs. uniprot
Match: D7G5G4_ECTSI (Lipid_desat domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G4_ECTSI)

HSP 1 Score: 338 bits (867), Expect = 5.560e-115
Identity = 160/225 (71.11%), Postives = 186/225 (82.67%), Query Frame = 1
Query:  100 MIFLTYASLGLNALYLLQALTTISSPWQAFWTAAAALAGVVIADLVSGVFHWSVDNYGDGNTPVFGTVIEAFQGHHASPWTITHRPFENNVHKITYAVLPLLALLAWANPGPVGAALGVNFLVGSLMSQECHRYAHMTKPPELVQVLQDLGIMVSRREHGQHHASPFEEN-----GVCNGPLDSLQIFRFLERVVYQVYGVEPIAWRLDTAVKEKSLSTGWLPFA 759
            MI L ++SL LNA+Y LQAL+T++SP +A WTAA A  G  IADLVSGVFHWSVDNYGDG+TPVFG VIEAFQGHH SPWTIT+RPFENNVHKI YAVLPLLALL   NPGP G ALGV FLVGSLMS E HR+AHMT PP +V+ LQ  G+ VSR+EHG+HH+SPFEE      GVCNGPLD  ++FRF+ERVVY++ GVEPIAW+LD +VKE +L+TGWLPF+
Sbjct:    1 MIALVWSSLALNAIYFLQALSTVTSPLEALWTAAGAFVGYTIADLVSGVFHWSVDNYGDGSTPVFGAVIEAFQGHHGSPWTITYRPFENNVHKIAYAVLPLLALLRLVNPGPAGVALGVAFLVGSLMSNEFHRFAHMTSPPPIVRALQKFGVTVSRKEHGRHHSSPFEEKYCIVTGVCNGPLDHFRVFRFMERVVYELNGVEPIAWKLDPSVKEVALATGWLPFS 225          
BLAST of mRNA_H-elongata_contig89686.16466.1 vs. uniprot
Match: A0A835ZEB7_9STRA (Kua-ubiquitin conjugating enzyme hybrid localization domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEB7_9STRA)

HSP 1 Score: 219 bits (559), Expect = 3.570e-67
Identity = 105/187 (56.15%), Postives = 133/187 (71.12%), Query Frame = 1
Query:  199 AAALAGVVIADLVSGVFHWSVDNYGDGNTPVFGTVIEAFQGHHASPWTITHRPFENNVHKITYAVLPLLALLAWANPGPVGAALGVNFLVGSLMSQECHRYAHMTKPPELVQVLQDLGIMVSRREHGQHHASPFEEN-----GVCNGPLDSLQIFRFLERVVYQVYGVEPIAWRLDTAVKEKSLSTG 744
            AA +AG++ +D  +GVFHWSVDNYG+  TPV G VI AFQGHH SPWTIT+R F NNVHK+ Y VLPLL LLA ++PGP G   GV+ L+G LM QE H+Y+HM +PP+ V  LQ  GI++S++EHG HH SPFE       G CN  +DS  ++R LERVVY+  GVEP  W+LDT  + K+ + G
Sbjct:  126 AATVAGILFSDAFTGVFHWSVDNYGNLQTPVLGPVIAAFQGHHESPWTITYRNFANNVHKVAYGVLPLLGLLALSHPGPAGTMFGVSALMGLLMCQELHKYSHMVRPPQWVARLQQSGIILSKKEHGLHHTSPFEGKYCIVTGHCNEIMDSTNLYRHLERVVYERTGVEPNCWKLDTTGEIKAAALG 312          
BLAST of mRNA_H-elongata_contig89686.16466.1 vs. uniprot
Match: A0A6S9FHC8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FHC8_HETAK)

HSP 1 Score: 213 bits (542), Expect = 1.090e-64
Identity = 118/240 (49.17%), Postives = 157/240 (65.42%), Query Frame = 1
Query:   40 RRKGTEPEL-LEGDRLENTPKMIFLTYASLGLNALYLLQALTTISSPWQAFWTAAAALAGVVIADLVSGVFHWSVDNYGDGNTPVFGTVIEAFQGHHASPWTITHRPFENNVHKITYAVLPLLALLAWANPGPVGAAL-GVNFLVGSLMSQECHRYAHMTKPPELVQVLQDLGIMVSRREHGQHHASPFEEN-----GVCNGPLDSLQIFRFLERVVYQVYGVEPIAWRLDTAVKEKSLS 738
            RRKG EPEL +EGD LE++P  I +T A   L    +   +  I +P +A    A  L   V +D  SGVFHWSVDNYG+G TP+ G+VIEAFQGHH++PWTIT+RPF NNVHKI    +P+ AL+A A P  + A L  V +L   ++SQE H+ +HM  PP   QVLQ+  +++SR+ HG HH+SPFE N     G CN  LD  ++FR LE++VY+  GVEP  W+LD  VK ++L+
Sbjct:   69 RRKGPEPELAIEGDSLEDSPVTIGITAAFWVLAFSLIGSYIMAIQTPAEAITMGATFLFSTVFSDFFSGVFHWSVDNYGNGKTPLLGSVIEAFQGHHSAPWTITYRPFANNVHKICKVAIPI-ALIANALPLALPAKLFTVLWLCFQVLSQEFHKLSHMVNPPAWAQVLQEKNVIISRKVHGLHHSSPFEGNYCILTGWCNQALDQSRLFRGLEKLVYEWNGVEPNCWKLDPKVKAEALA 307          
BLAST of mRNA_H-elongata_contig89686.16466.1 vs. uniprot
Match: A0A7S2W8D5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W8D5_9STRA)

HSP 1 Score: 201 bits (511), Expect = 1.010e-59
Identity = 108/240 (45.00%), Postives = 145/240 (60.42%), Query Frame = 1
Query:   46 KGTEPEL-LEGDRLENTPKMIFLTYASLGLNALYLLQALT---TISSPWQAFWTAAAALAGVVIADLVSGVFHWSVDNYGDGNTPVFGTVIEAFQGHHASPWTITHRPFENNVHKITYAVLPLLALLAWANPGPVGAALGVNFLVGSLMSQECHRYAHMTKPPELVQVLQDLGIMVSRREHGQHHASPFEEN-----GVCNGPLDSLQIFRFLERVVYQVYGVEPIAWRLDTAVKEKSLS 738
            KG  P L L GD LE  PK + L  ++  ++ + L   L    +  SP Q    +A+ALA ++ +DL SG+FHW  DNYG+G TP+ G VIEAFQGHH +PWTITHR F NNVHKI  A +PL  L+      P      V F    ++SQE H+ +H   PP     LQ   +++SR+EHG HH+SPFE +     G+CN PLD   ++R LE +VY+V GVEP  W+ D ++K+ SLS
Sbjct:   90 KGPSPVLVLGGDTLETRPKHVALVTSAWLVSFIALKPVLDLWMSSPSPEQLVSVSASALASMIFSDLFSGLFHWVADNYGNGRTPILGGVIEAFQGHHVNPWTITHRSFFNNVHKIAQAAIPLTLLVCVLTTSPEARLFWVIFFNAQILSQEFHKLSHTVNPPPWASWLQARNVILSRKEHGLHHSSPFESHYCILTGMCNKPLDRFNVWRRLEAIVYRVNGVEPNCWKEDPSLKKFSLS 329          
BLAST of mRNA_H-elongata_contig89686.16466.1 vs. uniprot
Match: A0A7S2B321_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B321_9STRA)

HSP 1 Score: 197 bits (502), Expect = 9.460e-59
Identity = 109/232 (46.98%), Postives = 138/232 (59.48%), Query Frame = 1
Query:   67 LEGDRLENTPKMIFLTYAS--LGLNALY-LLQALTTISSPWQAFWTAAAALAGVVIADLVSGVFHWSVDNYGDGNTPVFGTVIEAFQGHHASPWTITHRPFENNVHKITYAVLPLLALLAWANPGPVGAALGVNFLVGSLMSQECHRYAHMTKPPELVQVLQDLGIMVSRREHGQHHASPFEEN-----GVCNGPLDSLQIFRFLERVVYQVYGVEPIAWRLDTAVKEKSLS 738
            +EGD LE TP M+ L   S  + L AL  L  AL    SP Q    A   +A VV +D  SGVFHWS DNYG+G TPVFGTVI AFQGHH++PWTITHR F NNVHKI  +V+PLL L       P      V FL    MSQE H+ +HM KP   VQ +Q   + +S+  H  HH+SPFE +     GVCN  LD   ++R +E ++Y++ GVEP  WR +   + K+ +
Sbjct:   61 VEGDTLETTPMMVGLVAGSWVVSLMALQPLFAALAAGPSPLQLIQLAFTFVATVVFSDFFSGVFHWSTDNYGNGKTPVFGTVIAAFQGHHSTPWTITHRSFFNNVHKIARSVIPLLMLAMLCTSSPCARLFWVIFLNSQTMSQEFHKLSHMPKPSPFVQWMQRNNLAISKEIHMAHHSSPFEAHYCILTGVCNKALDDANVWRRMEAIIYKINGVEPNCWREEGGEELKAFA 292          
BLAST of mRNA_H-elongata_contig89686.16466.1 vs. uniprot
Match: A0A0G4F217_VITBC (Lipid_desat domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F217_VITBC)

HSP 1 Score: 196 bits (497), Expect = 1.960e-57
Identity = 110/249 (44.18%), Postives = 154/249 (61.85%), Query Frame = 1
Query:    7 AAANVPPQRRNRRKGTEPELL-EGDRLENTPKMIFLTYASLGLNALYLLQALTTISSPWQAFWTAAAALAGVVIADLVSGVFHWSVDNYGDGNTPVFGTVIEAFQGHHASPWTITHRPFENNVHKITYAVLPLLALLAWANPGPVGAALGVNFLVGSLMSQECHRYAHMTKPPELVQVLQDLGIMVSRREHGQHHASPFEEN-----GVCNGPLDSLQIFRFLERVVYQVYGVEPIAWRLDTAVKEKSL 735
            +AA   P+RR R    +P+L+ EGD  + TP    +TY +L L    + QAL + +S   A  +     A ++  DL SGVFHW+VDNYG+ NTPVFG+VIE FQGHH  PWTIT+RPF NNV+KI Y VL ++A        P        F +  +M+QE H+Y+HMTKPP +VQ LQ +G+M+ R+EHG HH+ PFE +     G  N  LD  Q+FR +ER +Y+  G  P +W+LD  ++++ +
Sbjct:   96 SAAPAAPKRR-RPLSKDPQLIVEGDSTQVTPYQQLVTYGTLALALAAIAQALVSDASN-PALMSLMVPFA-LLFGDLFSGVFHWAVDNYGNKNTPVFGSVIEGFQGHHKYPWTITYRPFANNVYKICYGVLLIMATTFILQAPPAVRVFMTVFGLSQVMAQEFHKYSHMTKPPIIVQRLQGMGLMLPRKEHGLHHSEPFEGHYSILFGWFNPLLDHSQVFRLMERAIYKWNGHMPNSWKLDERLRQEQV 341          
BLAST of mRNA_H-elongata_contig89686.16466.1 vs. uniprot
Match: A0A0G4GQ94_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GQ94_9ALVE)

HSP 1 Score: 196 bits (497), Expect = 2.070e-57
Identity = 110/243 (45.27%), Postives = 148/243 (60.91%), Query Frame = 1
Query:   31 RRNRRKGTEPELL-EGDRLENTPKMIFLTYASLGLNALYLLQALTTISSPWQ---AFWTAAAALAGVVIADLVSGVFHWSVDNYGDGNTPVFGTVIEAFQGHHASPWTITHRPFENNVHKITYAVLPLLALLAWANPG-PVGAALGVNFLVGSLMSQECHRYAHMTKPPELVQVLQDLGIMVSRREHGQHHASPFEEN-----GVCNGPLDSLQIFRFLERVVYQVYGVEPIAWRLDTAVKEK 729
            R  + KG  P L+ EGD +++TP    + +++L L    L ++  ++SS          A   L  +V  D  SG+FHW  DNYG+G+TPVFG VIE FQGHH +PWTIT+R FENN  KI YA   ++AL      G P        F V    +QE H+Y+HMT PP LV+ LQD G+++SR+EHGQHH SPFE +     G CN PLDS+  FRFLER V  + G EP +W+LD +++E+
Sbjct:  100 REGKGKGKAPVLVVEGDSVKSTPWQKGVVWSTLLLALFSLTKSAISVSSAQSLAGGLDIALGFLCALVFGDFFSGLFHWVADNYGNGSTPVFGGVIEGFQGHHKAPWTITYRDFENNTFKICYAAGAIVALSFLLLGGSPFWQTFWTVFAVSQAFAQEFHKYSHMTNPPALVRRLQDAGLILSRKEHGQHHNSPFEGHYCILFGFCNRPLDSIGFFRFLERRVVALGGHEPNSWKLDESLREE 342          
BLAST of mRNA_H-elongata_contig89686.16466.1 vs. uniprot
Match: K8YWU6_NANGC (Lipid_desat domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YWU6_NANGC)

HSP 1 Score: 191 bits (485), Expect = 8.100e-57
Identity = 97/203 (47.78%), Postives = 125/203 (61.58%), Query Frame = 1
Query:  172 SPWQAFWTAAAALAGVVIADLVSGVFHWSVDNYGDGNTPVFGTVIEAFQGHHASPWTITHRPFENNVHKITYAVLP-LLALLAWANPGPVGAALGVNFLVGSLMSQECHRYAHMTKPPELVQVLQDLGIMVSRREHGQHHASPFEEN-----GVCNGPLDSLQIFRFLERVVYQVYGVEPIAWRLDTAVKEKSLSTGWLPFAD 762
            +P      AA     V+ +D  SG+FHWSVDNYG+G TPV GTVIEAFQGHH +PWTIT+R F NNVHKIT   +P +LA++A     P+       F    ++SQE H+ +H++KPP     LQDLG+++SR+EHGQHH+SPFE N     G CN  LD    FRFLE+ VY V GV P  W+  ++     +  G    AD
Sbjct:   43 TPGDLTMLAATTAFSVLFSDFFSGIFHWSVDNYGNGKTPVLGTVIEAFQGHHDAPWTITYRQFSNNVHKITKITIPAMLAVVALHPSSPLVTLFATLFFNLQVLSQEFHKLSHLSKPPAWAVRLQDLGLIISRKEHGQHHSSPFESNYCILTGTCNRMLDESGFFRFLEKAVYDVTGVMPNCWKQGSSEFRAEMLVGRRGGAD 245          
BLAST of mRNA_H-elongata_contig89686.16466.1 vs. uniprot
Match: W7U0R7_9STRA (Kua-ubiquitin conjugating enzyme hybrid, localization n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U0R7_9STRA)

HSP 1 Score: 193 bits (491), Expect = 2.360e-56
Identity = 110/262 (41.98%), Postives = 154/262 (58.78%), Query Frame = 1
Query:   28 QRRNRRKGTEPELL--EGDRLENTPKMIFLTYASLGLNALYLLQALTTISS---------PWQAFWTAAAALAGVVIADLVSGVFHWSVDNYGDGNTPVFGTVIEAFQGHHASPWTITHRPFENNVHKITYAVLP-LLALLAWANPGPVGAALGVNFLVGSLMSQECHRYAHMTKPPELVQVLQDLGIMVSRREHGQHHASPFEEN-----GVCNGPLDSLQIFRFLERVVYQVYGVEPIAWRLDTAVKEKSLSTGWLPFAD 762
            +++++R+G  P ++  +GD LE++   I  +Y +   + L  L A+  ++S         P      AA     V+ +D  SG+FHWSVDNYG+G TPV GTVIEAFQGHH +PWTIT+R F NNVHKIT   +P +LA++A     P+       F    ++SQE H+ +H++KPP     LQDLG+++SR+EHGQHH+SPFE N     G CN  LD    FRFLE+ VY V GV P  W+  ++     +  G    AD
Sbjct:  100 EKKSKRRGPPPPVMVADGDVLESS--WIHRSYVA--THYLVTLAAMQQVASTYAGNGGVTPGDLTMLAATTAFSVLFSDFFSGIFHWSVDNYGNGKTPVLGTVIEAFQGHHDAPWTITYRQFSNNVHKITKITIPAMLAIVALHPSSPLVTLFATLFFNLQVLSQEFHKLSHLSKPPAWAVRLQDLGLIISRKEHGQHHSSPFESNYCILTGTCNRMLDESGFFRFLEKAVYDVTGVMPNCWKQGSSEFRAEMLVGRRGGAD 357          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89686.16466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KFV9_9PHAE2.180e-11969.92Lipid_desat domain-containing protein n=1 Tax=Ecto... [more]
D7G5G4_ECTSI5.560e-11571.11Lipid_desat domain-containing protein n=1 Tax=Ecto... [more]
A0A835ZEB7_9STRA3.570e-6756.15Kua-ubiquitin conjugating enzyme hybrid localizati... [more]
A0A6S9FHC8_HETAK1.090e-6449.17Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2W8D5_9STRA1.010e-5945.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2B321_9STRA9.460e-5946.98Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A0G4F217_VITBC1.960e-5744.18Lipid_desat domain-containing protein n=2 Tax=Vitr... [more]
A0A0G4GQ94_9ALVE2.070e-5745.27Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
K8YWU6_NANGC8.100e-5747.78Lipid_desat domain-containing protein n=2 Tax=Mono... [more]
W7U0R7_9STRA2.360e-5641.98Kua-ubiquitin conjugating enzyme hybrid, localizat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig89686contigH-elongata_contig89686:1609..2388 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score339.7
Seed ortholog evalue1.2e-90
Seed eggNOG ortholog2880.D7G5G4
Preferred nameTMEM189
KEGG koko:K10704,ko:K20417,ko:K20656
KEGG Pathwayko04624,map04624
GOsGO:0000151,GO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006082,GO:0006464,GO:0006508,GO:0006511,GO:0006629,GO:0006631,GO:0006633,GO:0006636,GO:0006644,GO:0006650,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0008610,GO:0009056,GO:0009057,GO:0009058,GO:0009507,GO:0009526,GO:0009536,GO:0009628,GO:0009941,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0012505,GO:0016020,GO:0016021,GO:0016053,GO:0016491,GO:0016567,GO:0016705,GO:0016740,GO:0019538,GO:0019637,GO:0019752,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0030433,GO:0031090,GO:0031224,GO:0031371,GO:0031625,GO:0031967,GO:0031969,GO:0031975,GO:0032446,GO:0032787,GO:0032991,GO:0033554,GO:0033559,GO:0034976,GO:0035370,GO:0036211,GO:0036503,GO:0042170,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043436,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044281,GO:0044283,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0046471,GO:0046486,GO:0050896,GO:0051603,GO:0051716,GO:0052637,GO:0055114,GO:0061630,GO:0061659,GO:0070534,GO:0070647,GO:0071704,GO:0072330,GO:0080132,GO:0080167,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901576,GO:1901698,GO:1902494,GO:1990234
EggNOG free text desc.protein ubiquitination
EggNOG OGsKOG3011@1,KOG3011@2759
EC1.14.19.43
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionB-domain containing protein Kua
Ec32 orthologEc-22_000510.1
Exons1
Model size780
Cds size780
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931297.4588501-CDS-H-elongata_contig89686:1608..23881622931297.4588501-CDS-H-elongata_contig89686:1608..2388Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89686 1609..2388 +
1691679778.4858937-CDS-H-elongata_contig89686:1608..23881691679778.4858937-CDS-H-elongata_contig89686:1608..2388Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89686 1609..2388 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig89686.16466.1prot_H-elongata_contig89686.16466.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig89686 1609..2388 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig89686.16466.1

>prot_H-elongata_contig89686.16466.1 ID=prot_H-elongata_contig89686.16466.1|Name=mRNA_H-elongata_contig89686.16466.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=260bp
AGAAANVPPQRRNRRKGTEPELLEGDRLENTPKMIFLTYASLGLNALYLL
QALTTISSPWQAFWTAAAALAGVVIADLVSGVFHWSVDNYGDGNTPVFGT
VIEAFQGHHASPWTITHRPFENNVHKITYAVLPLLALLAWANPGPVGAAL
GVNFLVGSLMSQECHRYAHMTKPPELVQVLQDLGIMVSRREHGQHHASPF
EENGVCNGPLDSLQIFRFLERVVYQVYGVEPIAWRLDTAVKEKSLSTGWL
PFADRASPE*
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mRNA from alignment at H-elongata_contig89686:1609..2388+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig89686.16466.1 ID=mRNA_H-elongata_contig89686.16466.1|Name=mRNA_H-elongata_contig89686.16466.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=780bp|location=Sequence derived from alignment at H-elongata_contig89686:1609..2388+ (Himanthalia elongata Himel1 dioecious)
GCTGGAGCGGCGGCAAACGTACCGCCGCAACGACGAAACCGTAGGAAGGG CACGGAACCCGAGCTCCTGGAAGGGGATCGCCTGGAGAACACGCCCAAGA TGATCTTCCTCACGTATGCCTCCCTTGGACTAAACGCTCTTTATTTGCTT CAGGCTTTGACAACGATATCGTCGCCGTGGCAAGCGTTCTGGACGGCCGC TGCGGCCCTCGCGGGGGTGGTGATCGCCGACCTGGTGAGCGGAGTGTTCC ATTGGTCGGTCGACAACTACGGCGATGGAAACACGCCCGTGTTTGGGACG GTAATCGAGGCATTCCAGGGTCACCACGCGTCACCTTGGACCATCACCCA TCGACCGTTCGAGAACAATGTCCACAAGATTACCTACGCGGTGCTTCCTC TCCTGGCGCTCCTCGCATGGGCGAACCCTGGGCCGGTCGGGGCGGCCCTG GGGGTGAATTTTCTCGTGGGATCGCTCATGTCCCAGGAATGCCACCGTTA CGCGCACATGACAAAGCCGCCGGAGCTCGTGCAGGTTCTGCAGGACTTGG GGATCATGGTCAGCCGCAGGGAACATGGGCAGCACCACGCGAGCCCTTTC GAGGAGAACGGAGTTTGCAACGGTCCCTTGGACTCCTTACAAATATTCCG TTTCTTGGAACGGGTCGTTTATCAGGTGTACGGTGTGGAGCCGATCGCTT GGCGGCTGGACACGGCCGTCAAGGAGAAGTCTCTGTCAACGGGGTGGCTA CCGTTCGCGGACCGAGCGTCTCCGGAGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig89686:1609..2388+

>mRNA_H-elongata_contig89686.16466.1 ID=mRNA_H-elongata_contig89686.16466.1|Name=mRNA_H-elongata_contig89686.16466.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1560bp|location=Sequence derived from alignment at H-elongata_contig89686:1609..2388+ (Himanthalia elongata Himel1 dioecious)
GCTGGAGCGGCGGCAAACGTACCGCCGCAACGACGAAACCGTAGGAAGGG
CACGGAACCCGAGCTCCTGGAAGGGGATCGCCTGGAGAACACGCCCAAGA
TGATCTTCCTCACGTATGCCTCCCTTGGACTAAACGCTCTTTATTTGCTT
CAGGCTTTGACAACGATATCGTCGCCGTGGCAAGCGTTCTGGACGGCCGC
TGCGGCCCTCGCGGGGGTGGTGATCGCCGACCTGGTGAGCGGAGTGTTCC
ATTGGTCGGTCGACAACTACGGCGATGGAAACACGCCCGTGTTTGGGACG
GTAATCGAGGCATTCCAGGGTCACCACGCGTCACCTTGGACCATCACCCA
TCGACCGTTCGAGAACAATGTCCACAAGATTACCTACGCGGTGCTTCCTC
TCCTGGCGCTCCTCGCATGGGCGAACCCTGGGCCGGTCGGGGCGGCCCTG
GGGGTGAATTTTCTCGTGGGATCGCTCATGTCCCAGGAATGCCACCGTTA
CGCGCACATGACAAAGCCGCCGGAGCTCGTGCAGGTTCTGCAGGACTTGG
GGATCATGGTCAGCCGCAGGGAACATGGGCAGCACCACGCGAGCCCTTTC
GAGGAGAACGGAGTTTGCAACGGTCCCTTGGACTCCTTACAAATATTCCG
TTTCTTGGAACGGGTCGTTTATCAGGTGTACGGTGTGGAGCCGATCGCTT
GGCGGCTGGACACGGCCGTCAAGGAGAAGTCTCTGTCAACGGGGTGGCTA
CCGTTCGCGGACCGAGCGTCTCCGGAGTAGGCTGGAGCGGCGGCAAACGT
ACCGCCGCAACGACGAAACCGTAGGAAGGGCACGGAACCCGAGCTCCTGG
AAGGGGATCGCCTGGAGAACACGCCCAAGATGATCTTCCTCACGTATGCC
TCCCTTGGACTAAACGCTCTTTATTTGCTTCAGGCTTTGACAACGATATC
GTCGCCGTGGCAAGCGTTCTGGACGGCCGCTGCGGCCCTCGCGGGGGTGG
TGATCGCCGACCTGGTGAGCGGAGTGTTCCATTGGTCGGTCGACAACTAC
GGCGATGGAAACACGCCCGTGTTTGGGACGGTAATCGAGGCATTCCAGGG
TCACCACGCGTCACCTTGGACCATCACCCATCGACCGTTCGAGAACAATG
TCCACAAGATTACCTACGCGGTGCTTCCTCTCCTGGCGCTCCTCGCATGG
GCGAACCCTGGGCCGGTCGGGGCGGCCCTGGGGGTGAATTTTCTCGTGGG
ATCGCTCATGTCCCAGGAATGCCACCGTTACGCGCACATGACAAAGCCGC
CGGAGCTCGTGCAGGTTCTGCAGGACTTGGGGATCATGGTCAGCCGCAGG
GAACATGGGCAGCACCACGCGAGCCCTTTCGAGGAGAACGGAGTTTGCAA
CGGTCCCTTGGACTCCTTACAAATATTCCGTTTCTTGGAACGGGTCGTTT
ATCAGGTGTACGGTGTGGAGCCGATCGCTTGGCGGCTGGACACGGCCGTC
AAGGAGAAGTCTCTGTCAACGGGGTGGCTACCGTTCGCGGACCGAGCGTC
TCCGGAGTAG
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