mRNA_H-elongata_contig89686.16466.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig89686.16466.1 vs. uniprot
Match: A0A6H5KFV9_9PHAE (Lipid_desat domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFV9_9PHAE) HSP 1 Score: 355 bits (912), Expect = 2.180e-119 Identity = 172/246 (69.92%), Postives = 200/246 (81.30%), Query Frame = 1
Query: 40 RRKGTEPELL-EGDRLENTPKMIFLTYASLGLNALYLLQALTTISSPWQAFWTAAAALAGVVIADLVSGVFHWSVDNYGDGNTPVFGTVIEAFQGHHASPWTITHRPFENNVHKITYAVLPLLALLAWANPGPVGAALGVNFLVGSLMSQECHRYAHMTKPPELVQVLQDLGIMVSRREHGQHHASPFEEN-----GVCNGPLDSLQIFRFLERVVYQVYGVEPIAWRLDTAVKEKSLSTGWLPFA 759
RR G PE++ EGD L NTPKMI L ++SL LNA+YLLQAL+T++SP +A WTAA A G IADLVSGVFHWSVDNYGD +TPVFG VIEAFQGHH SPWTIT+RPFENNVHKI YAVLPLLALL NPGP G ALGV FLVGSLMS E HR+AHMT PP LV+ LQ G+ VSR+EHG+HH+SPFEE G+CNGPLD ++FRF+ERVVY++ GVEPIAW+LD +VKE +L+T WLPF+
Sbjct: 145 RRPGKAPEVVVEGDLLGNTPKMIVLVWSSLALNAIYLLQALSTVTSPLEALWTAAGAFVGYTIADLVSGVFHWSVDNYGDDSTPVFGAVIEAFQGHHGSPWTITYRPFENNVHKIAYAVLPLLALLRLVNPGPAGVALGVTFLVGSLMSNEFHRFAHMTSPPPLVRALQKFGVTVSRKEHGRHHSSPFEEKYCIVTGICNGPLDHFRVFRFMERVVYELNGVEPIAWKLDPSVKEVALATRWLPFS 390
BLAST of mRNA_H-elongata_contig89686.16466.1 vs. uniprot
Match: D7G5G4_ECTSI (Lipid_desat domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G4_ECTSI) HSP 1 Score: 338 bits (867), Expect = 5.560e-115 Identity = 160/225 (71.11%), Postives = 186/225 (82.67%), Query Frame = 1
Query: 100 MIFLTYASLGLNALYLLQALTTISSPWQAFWTAAAALAGVVIADLVSGVFHWSVDNYGDGNTPVFGTVIEAFQGHHASPWTITHRPFENNVHKITYAVLPLLALLAWANPGPVGAALGVNFLVGSLMSQECHRYAHMTKPPELVQVLQDLGIMVSRREHGQHHASPFEEN-----GVCNGPLDSLQIFRFLERVVYQVYGVEPIAWRLDTAVKEKSLSTGWLPFA 759
MI L ++SL LNA+Y LQAL+T++SP +A WTAA A G IADLVSGVFHWSVDNYGDG+TPVFG VIEAFQGHH SPWTIT+RPFENNVHKI YAVLPLLALL NPGP G ALGV FLVGSLMS E HR+AHMT PP +V+ LQ G+ VSR+EHG+HH+SPFEE GVCNGPLD ++FRF+ERVVY++ GVEPIAW+LD +VKE +L+TGWLPF+
Sbjct: 1 MIALVWSSLALNAIYFLQALSTVTSPLEALWTAAGAFVGYTIADLVSGVFHWSVDNYGDGSTPVFGAVIEAFQGHHGSPWTITYRPFENNVHKIAYAVLPLLALLRLVNPGPAGVALGVAFLVGSLMSNEFHRFAHMTSPPPIVRALQKFGVTVSRKEHGRHHSSPFEEKYCIVTGVCNGPLDHFRVFRFMERVVYELNGVEPIAWKLDPSVKEVALATGWLPFS 225
BLAST of mRNA_H-elongata_contig89686.16466.1 vs. uniprot
Match: A0A835ZEB7_9STRA (Kua-ubiquitin conjugating enzyme hybrid localization domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEB7_9STRA) HSP 1 Score: 219 bits (559), Expect = 3.570e-67 Identity = 105/187 (56.15%), Postives = 133/187 (71.12%), Query Frame = 1
Query: 199 AAALAGVVIADLVSGVFHWSVDNYGDGNTPVFGTVIEAFQGHHASPWTITHRPFENNVHKITYAVLPLLALLAWANPGPVGAALGVNFLVGSLMSQECHRYAHMTKPPELVQVLQDLGIMVSRREHGQHHASPFEEN-----GVCNGPLDSLQIFRFLERVVYQVYGVEPIAWRLDTAVKEKSLSTG 744
AA +AG++ +D +GVFHWSVDNYG+ TPV G VI AFQGHH SPWTIT+R F NNVHK+ Y VLPLL LLA ++PGP G GV+ L+G LM QE H+Y+HM +PP+ V LQ GI++S++EHG HH SPFE G CN +DS ++R LERVVY+ GVEP W+LDT + K+ + G
Sbjct: 126 AATVAGILFSDAFTGVFHWSVDNYGNLQTPVLGPVIAAFQGHHESPWTITYRNFANNVHKVAYGVLPLLGLLALSHPGPAGTMFGVSALMGLLMCQELHKYSHMVRPPQWVARLQQSGIILSKKEHGLHHTSPFEGKYCIVTGHCNEIMDSTNLYRHLERVVYERTGVEPNCWKLDTTGEIKAAALG 312
BLAST of mRNA_H-elongata_contig89686.16466.1 vs. uniprot
Match: A0A6S9FHC8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9FHC8_HETAK) HSP 1 Score: 213 bits (542), Expect = 1.090e-64 Identity = 118/240 (49.17%), Postives = 157/240 (65.42%), Query Frame = 1
Query: 40 RRKGTEPEL-LEGDRLENTPKMIFLTYASLGLNALYLLQALTTISSPWQAFWTAAAALAGVVIADLVSGVFHWSVDNYGDGNTPVFGTVIEAFQGHHASPWTITHRPFENNVHKITYAVLPLLALLAWANPGPVGAAL-GVNFLVGSLMSQECHRYAHMTKPPELVQVLQDLGIMVSRREHGQHHASPFEEN-----GVCNGPLDSLQIFRFLERVVYQVYGVEPIAWRLDTAVKEKSLS 738
RRKG EPEL +EGD LE++P I +T A L + + I +P +A A L V +D SGVFHWSVDNYG+G TP+ G+VIEAFQGHH++PWTIT+RPF NNVHKI +P+ AL+A A P + A L V +L ++SQE H+ +HM PP QVLQ+ +++SR+ HG HH+SPFE N G CN LD ++FR LE++VY+ GVEP W+LD VK ++L+
Sbjct: 69 RRKGPEPELAIEGDSLEDSPVTIGITAAFWVLAFSLIGSYIMAIQTPAEAITMGATFLFSTVFSDFFSGVFHWSVDNYGNGKTPLLGSVIEAFQGHHSAPWTITYRPFANNVHKICKVAIPI-ALIANALPLALPAKLFTVLWLCFQVLSQEFHKLSHMVNPPAWAQVLQEKNVIISRKVHGLHHSSPFEGNYCILTGWCNQALDQSRLFRGLEKLVYEWNGVEPNCWKLDPKVKAEALA 307
BLAST of mRNA_H-elongata_contig89686.16466.1 vs. uniprot
Match: A0A7S2W8D5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W8D5_9STRA) HSP 1 Score: 201 bits (511), Expect = 1.010e-59 Identity = 108/240 (45.00%), Postives = 145/240 (60.42%), Query Frame = 1
Query: 46 KGTEPEL-LEGDRLENTPKMIFLTYASLGLNALYLLQALT---TISSPWQAFWTAAAALAGVVIADLVSGVFHWSVDNYGDGNTPVFGTVIEAFQGHHASPWTITHRPFENNVHKITYAVLPLLALLAWANPGPVGAALGVNFLVGSLMSQECHRYAHMTKPPELVQVLQDLGIMVSRREHGQHHASPFEEN-----GVCNGPLDSLQIFRFLERVVYQVYGVEPIAWRLDTAVKEKSLS 738
KG P L L GD LE PK + L ++ ++ + L L + SP Q +A+ALA ++ +DL SG+FHW DNYG+G TP+ G VIEAFQGHH +PWTITHR F NNVHKI A +PL L+ P V F ++SQE H+ +H PP LQ +++SR+EHG HH+SPFE + G+CN PLD ++R LE +VY+V GVEP W+ D ++K+ SLS
Sbjct: 90 KGPSPVLVLGGDTLETRPKHVALVTSAWLVSFIALKPVLDLWMSSPSPEQLVSVSASALASMIFSDLFSGLFHWVADNYGNGRTPILGGVIEAFQGHHVNPWTITHRSFFNNVHKIAQAAIPLTLLVCVLTTSPEARLFWVIFFNAQILSQEFHKLSHTVNPPPWASWLQARNVILSRKEHGLHHSSPFESHYCILTGMCNKPLDRFNVWRRLEAIVYRVNGVEPNCWKEDPSLKKFSLS 329
BLAST of mRNA_H-elongata_contig89686.16466.1 vs. uniprot
Match: A0A7S2B321_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B321_9STRA) HSP 1 Score: 197 bits (502), Expect = 9.460e-59 Identity = 109/232 (46.98%), Postives = 138/232 (59.48%), Query Frame = 1
Query: 67 LEGDRLENTPKMIFLTYAS--LGLNALY-LLQALTTISSPWQAFWTAAAALAGVVIADLVSGVFHWSVDNYGDGNTPVFGTVIEAFQGHHASPWTITHRPFENNVHKITYAVLPLLALLAWANPGPVGAALGVNFLVGSLMSQECHRYAHMTKPPELVQVLQDLGIMVSRREHGQHHASPFEEN-----GVCNGPLDSLQIFRFLERVVYQVYGVEPIAWRLDTAVKEKSLS 738
+EGD LE TP M+ L S + L AL L AL SP Q A +A VV +D SGVFHWS DNYG+G TPVFGTVI AFQGHH++PWTITHR F NNVHKI +V+PLL L P V FL MSQE H+ +HM KP VQ +Q + +S+ H HH+SPFE + GVCN LD ++R +E ++Y++ GVEP WR + + K+ +
Sbjct: 61 VEGDTLETTPMMVGLVAGSWVVSLMALQPLFAALAAGPSPLQLIQLAFTFVATVVFSDFFSGVFHWSTDNYGNGKTPVFGTVIAAFQGHHSTPWTITHRSFFNNVHKIARSVIPLLMLAMLCTSSPCARLFWVIFLNSQTMSQEFHKLSHMPKPSPFVQWMQRNNLAISKEIHMAHHSSPFEAHYCILTGVCNKALDDANVWRRMEAIIYKINGVEPNCWREEGGEELKAFA 292
BLAST of mRNA_H-elongata_contig89686.16466.1 vs. uniprot
Match: A0A0G4F217_VITBC (Lipid_desat domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4F217_VITBC) HSP 1 Score: 196 bits (497), Expect = 1.960e-57 Identity = 110/249 (44.18%), Postives = 154/249 (61.85%), Query Frame = 1
Query: 7 AAANVPPQRRNRRKGTEPELL-EGDRLENTPKMIFLTYASLGLNALYLLQALTTISSPWQAFWTAAAALAGVVIADLVSGVFHWSVDNYGDGNTPVFGTVIEAFQGHHASPWTITHRPFENNVHKITYAVLPLLALLAWANPGPVGAALGVNFLVGSLMSQECHRYAHMTKPPELVQVLQDLGIMVSRREHGQHHASPFEEN-----GVCNGPLDSLQIFRFLERVVYQVYGVEPIAWRLDTAVKEKSL 735
+AA P+RR R +P+L+ EGD + TP +TY +L L + QAL + +S A + A ++ DL SGVFHW+VDNYG+ NTPVFG+VIE FQGHH PWTIT+RPF NNV+KI Y VL ++A P F + +M+QE H+Y+HMTKPP +VQ LQ +G+M+ R+EHG HH+ PFE + G N LD Q+FR +ER +Y+ G P +W+LD ++++ +
Sbjct: 96 SAAPAAPKRR-RPLSKDPQLIVEGDSTQVTPYQQLVTYGTLALALAAIAQALVSDASN-PALMSLMVPFA-LLFGDLFSGVFHWAVDNYGNKNTPVFGSVIEGFQGHHKYPWTITYRPFANNVYKICYGVLLIMATTFILQAPPAVRVFMTVFGLSQVMAQEFHKYSHMTKPPIIVQRLQGMGLMLPRKEHGLHHSEPFEGHYSILFGWFNPLLDHSQVFRLMERAIYKWNGHMPNSWKLDERLRQEQV 341
BLAST of mRNA_H-elongata_contig89686.16466.1 vs. uniprot
Match: A0A0G4GQ94_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4GQ94_9ALVE) HSP 1 Score: 196 bits (497), Expect = 2.070e-57 Identity = 110/243 (45.27%), Postives = 148/243 (60.91%), Query Frame = 1
Query: 31 RRNRRKGTEPELL-EGDRLENTPKMIFLTYASLGLNALYLLQALTTISSPWQ---AFWTAAAALAGVVIADLVSGVFHWSVDNYGDGNTPVFGTVIEAFQGHHASPWTITHRPFENNVHKITYAVLPLLALLAWANPG-PVGAALGVNFLVGSLMSQECHRYAHMTKPPELVQVLQDLGIMVSRREHGQHHASPFEEN-----GVCNGPLDSLQIFRFLERVVYQVYGVEPIAWRLDTAVKEK 729
R + KG P L+ EGD +++TP + +++L L L ++ ++SS A L +V D SG+FHW DNYG+G+TPVFG VIE FQGHH +PWTIT+R FENN KI YA ++AL G P F V +QE H+Y+HMT PP LV+ LQD G+++SR+EHGQHH SPFE + G CN PLDS+ FRFLER V + G EP +W+LD +++E+
Sbjct: 100 REGKGKGKAPVLVVEGDSVKSTPWQKGVVWSTLLLALFSLTKSAISVSSAQSLAGGLDIALGFLCALVFGDFFSGLFHWVADNYGNGSTPVFGGVIEGFQGHHKAPWTITYRDFENNTFKICYAAGAIVALSFLLLGGSPFWQTFWTVFAVSQAFAQEFHKYSHMTNPPALVRRLQDAGLILSRKEHGQHHNSPFEGHYCILFGFCNRPLDSIGFFRFLERRVVALGGHEPNSWKLDESLREE 342
BLAST of mRNA_H-elongata_contig89686.16466.1 vs. uniprot
Match: K8YWU6_NANGC (Lipid_desat domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YWU6_NANGC) HSP 1 Score: 191 bits (485), Expect = 8.100e-57 Identity = 97/203 (47.78%), Postives = 125/203 (61.58%), Query Frame = 1
Query: 172 SPWQAFWTAAAALAGVVIADLVSGVFHWSVDNYGDGNTPVFGTVIEAFQGHHASPWTITHRPFENNVHKITYAVLP-LLALLAWANPGPVGAALGVNFLVGSLMSQECHRYAHMTKPPELVQVLQDLGIMVSRREHGQHHASPFEEN-----GVCNGPLDSLQIFRFLERVVYQVYGVEPIAWRLDTAVKEKSLSTGWLPFAD 762
+P AA V+ +D SG+FHWSVDNYG+G TPV GTVIEAFQGHH +PWTIT+R F NNVHKIT +P +LA++A P+ F ++SQE H+ +H++KPP LQDLG+++SR+EHGQHH+SPFE N G CN LD FRFLE+ VY V GV P W+ ++ + G AD
Sbjct: 43 TPGDLTMLAATTAFSVLFSDFFSGIFHWSVDNYGNGKTPVLGTVIEAFQGHHDAPWTITYRQFSNNVHKITKITIPAMLAVVALHPSSPLVTLFATLFFNLQVLSQEFHKLSHLSKPPAWAVRLQDLGLIISRKEHGQHHSSPFESNYCILTGTCNRMLDESGFFRFLEKAVYDVTGVMPNCWKQGSSEFRAEMLVGRRGGAD 245
BLAST of mRNA_H-elongata_contig89686.16466.1 vs. uniprot
Match: W7U0R7_9STRA (Kua-ubiquitin conjugating enzyme hybrid, localization n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U0R7_9STRA) HSP 1 Score: 193 bits (491), Expect = 2.360e-56 Identity = 110/262 (41.98%), Postives = 154/262 (58.78%), Query Frame = 1
Query: 28 QRRNRRKGTEPELL--EGDRLENTPKMIFLTYASLGLNALYLLQALTTISS---------PWQAFWTAAAALAGVVIADLVSGVFHWSVDNYGDGNTPVFGTVIEAFQGHHASPWTITHRPFENNVHKITYAVLP-LLALLAWANPGPVGAALGVNFLVGSLMSQECHRYAHMTKPPELVQVLQDLGIMVSRREHGQHHASPFEEN-----GVCNGPLDSLQIFRFLERVVYQVYGVEPIAWRLDTAVKEKSLSTGWLPFAD 762
+++++R+G P ++ +GD LE++ I +Y + + L L A+ ++S P AA V+ +D SG+FHWSVDNYG+G TPV GTVIEAFQGHH +PWTIT+R F NNVHKIT +P +LA++A P+ F ++SQE H+ +H++KPP LQDLG+++SR+EHGQHH+SPFE N G CN LD FRFLE+ VY V GV P W+ ++ + G AD
Sbjct: 100 EKKSKRRGPPPPVMVADGDVLESS--WIHRSYVA--THYLVTLAAMQQVASTYAGNGGVTPGDLTMLAATTAFSVLFSDFFSGIFHWSVDNYGNGKTPVLGTVIEAFQGHHDAPWTITYRQFSNNVHKITKITIPAMLAIVALHPSSPLVTLFATLFFNLQVLSQEFHKLSHLSKPPAWAVRLQDLGLIISRKEHGQHHSSPFESNYCILTGTCNRMLDESGFFRFLEKAVYDVTGVMPNCWKQGSSEFRAEMLVGRRGGAD 357 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89686.16466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig89686.16466.1 >prot_H-elongata_contig89686.16466.1 ID=prot_H-elongata_contig89686.16466.1|Name=mRNA_H-elongata_contig89686.16466.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=260bp AGAAANVPPQRRNRRKGTEPELLEGDRLENTPKMIFLTYASLGLNALYLLback to top mRNA from alignment at H-elongata_contig89686:1609..2388+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig89686.16466.1 ID=mRNA_H-elongata_contig89686.16466.1|Name=mRNA_H-elongata_contig89686.16466.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=780bp|location=Sequence derived from alignment at H-elongata_contig89686:1609..2388+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig89686:1609..2388+ >mRNA_H-elongata_contig89686.16466.1 ID=mRNA_H-elongata_contig89686.16466.1|Name=mRNA_H-elongata_contig89686.16466.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1560bp|location=Sequence derived from alignment at H-elongata_contig89686:1609..2388+ (Himanthalia elongata Himel1 dioecious)back to top |