mRNA_H-elongata_contig89643.16462.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig89643.16462.1 vs. uniprot
Match: D8LSR1_ECTSI (ANAPC4_WD40 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSR1_ECTSI) HSP 1 Score: 142 bits (358), Expect = 2.490e-39 Identity = 66/79 (83.54%), Postives = 72/79 (91.14%), Query Frame = 1
Query: 1 ELAPVHSLEGHRLGVLSIRAFNKGKEAVTSSLDSCMRFWDLESGELTAAEEPGPVEAWTLDVSKDDRLLAGGTQKGSIN 237
ELAPVHSL GHRLGVLS+RAFN GKEAV+SS+DSC+RFWDLESGE TA EEPGPVEAWTL VS DD+LLA GTQKGS+N
Sbjct: 42 ELAPVHSLNGHRLGVLSVRAFNHGKEAVSSSIDSCIRFWDLESGEQTAVEEPGPVEAWTLAVSTDDKLLASGTQKGSVN 120
BLAST of mRNA_H-elongata_contig89643.16462.1 vs. uniprot
Match: A0A7S2B7M3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B7M3_9STRA) HSP 1 Score: 118 bits (296), Expect = 6.240e-30 Identity = 59/123 (47.97%), Postives = 82/123 (66.67%), Query Frame = 1
Query: 19 SLEGHRLGVLSIRAFNKGKEAVTSSLDSCMRFWDLESGELTAAEEPGPVEAWTLDVSKDDRLLAGGTQKGSINLWALDGHKKARSLSH-TRDKFVMSVAFSP--DGKWVASGGLDGLVNIFDV 378
S EGHRLGV+S+ +G SS+DS +RFWDLE+GE +A+ + G +EAW+L +S D+ LA G Q+G++N+W + KK SL+H +R FVMSVAFSP D VA DG + ++DV
Sbjct: 61 SFEGHRLGVVSVAVNTEGTWCACSSIDSVIRFWDLETGETSASIDEGALEAWSLALSPHDKFLATGAQRGAVNIWDAEAKKKMASLTHGSRGSFVMSVAFSPLVDQLQVAGSSKDGSIAVYDV 183
BLAST of mRNA_H-elongata_contig89643.16462.1 vs. uniprot
Match: A0A4U1EMH1_MONMO (Uncharacterized protein n=1 Tax=Monodon monoceros TaxID=40151 RepID=A0A4U1EMH1_MONMO) HSP 1 Score: 112 bits (280), Expect = 2.560e-27 Identity = 59/144 (40.97%), Postives = 87/144 (60.42%), Query Frame = 1
Query: 19 SLEGHRLGVLSIRAFNKGKEAVTSSLDSCMRFWDLESGELTAAEEPGPVEAWTLDVSKDDRLLAGGTQKGSINLWALDGHKKARSLSHTRDKFVMSVAF------------------------SPDGKWVASGGLDGLVNIFDV 378
SLEGH+LGV+S+ + A +SSLD+ +R WDLE+G+ + + GPV+AWTL S D + LA GT G +N++ ++ KK SL TR KF++S+A+ SPDGK++ASG +DG++NIFD+
Sbjct: 108 SLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD-TRGKFILSIAYVRKRCSFFLSLILSVYSSSPLYSLSPDGKYLASGAIDGIINIFDI 250
BLAST of mRNA_H-elongata_contig89643.16462.1 vs. uniprot
Match: A0A2C9JG02_BIOGL (Uncharacterized protein n=1 Tax=Biomphalaria glabrata TaxID=6526 RepID=A0A2C9JG02_BIOGL) HSP 1 Score: 106 bits (265), Expect = 1.300e-25 Identity = 56/134 (41.79%), Postives = 80/134 (59.70%), Query Frame = 1
Query: 16 HSLEGHRLGVLSIRAFNKGKEAVTSSLDSCMRFWDLESGELTAAEEPGPVEAWTLDVSKDDRLLAGGTQKG-----SINLWALDGHKKARSLSHTRDKFVMSV--------AFSPDGKWVASGGLDGLVNIFDV 378
H+LEGH+LGV+S+ + G A +SSLDS +R WDLESG++ + + GPV+AWT+ S D R LA G+ G ++W+ K R S + S+ SPDGK++ASG LDG+VN+FD+
Sbjct: 21 HTLEGHQLGVVSVDINSDGSLAASSSLDSHVRIWDLESGKMAKSIDAGPVDAWTIAFSPDSRFLASGSHTGCKITHEDSIWSCAFGKNERDPSGSETIVTGSIDDYVKVWKCQSPDGKFIASGALDGIVNVFDI 154
BLAST of mRNA_H-elongata_contig89643.16462.1 vs. uniprot
Match: A0A3S3QAI8_9ACAR (WD repeat-containing protein 61-like protein n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3QAI8_9ACAR) HSP 1 Score: 103 bits (257), Expect = 3.620e-24 Identity = 54/118 (45.76%), Postives = 77/118 (65.25%), Query Frame = 1
Query: 25 EGHRLGVLSIRAFNKGKEAVTSSLDSCMRFWDLESGELTAAEEPGPVEAWTLDVSKDDRLLAGGTQKGSINLWALDGHKKARSLSHTRDKFVMSVAFSPDGKWVASGGLDGLVNIFDV 378
EGH LGV+S+ ++G A +SSLDS +RFWDL SG + + GPV+AWT+ S D +L+A G+ G INL+ + + L T+ KF +++AF +GK VASG DG++ IFDV
Sbjct: 74 EGHALGVVSVDINSEGTIAASSSLDSHIRFWDLNSGTQVQSIDAGPVDAWTVCFSPDSKLIATGSYSGKINLYNTETGTREAQLD-TKGKFPLTIAFV-NGKSVASGATDGMIKIFDV 189
BLAST of mRNA_H-elongata_contig89643.16462.1 vs. uniprot
Match: A0A836CKX9_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKX9_9STRA) HSP 1 Score: 100 bits (249), Expect = 3.670e-23 Identity = 46/77 (59.74%), Postives = 61/77 (79.22%), Query Frame = 1
Query: 4 LAPVHSLEGHRLGVLSIRAFNKGKEAVTSSLDSCMRFWDLESGELTAAEEPGPVEAWTLDVSKDDRLLAGGTQKGSI 234
L+P H L GHRLGV+SI+A +G AVTSS+DSC+RFWDLESG T + GPVEAW++D+S + +LLA GTQ+G++
Sbjct: 43 LSPGHVLGGHRLGVVSIKADAEGSVAVTSSVDSCLRFWDLESGTKTNTIDAGPVEAWSVDMSPNGKLLAAGTQQGAV 119
BLAST of mRNA_H-elongata_contig89643.16462.1 vs. uniprot
Match: A0A183MSN5_9TREM (WD_REPEATS_REGION domain-containing protein n=1 Tax=Schistosoma margrebowiei TaxID=48269 RepID=A0A183MSN5_9TREM) HSP 1 Score: 96.7 bits (239), Expect = 2.250e-22 Identity = 50/126 (39.68%), Postives = 77/126 (61.11%), Query Frame = 1
Query: 1 ELAPVHSLEGHRLGVLSIRAFNKGKEAVTSSLDSCMRFWDLESGELTAAEEPGPVEAWTLDVSKDDRLLAGGTQKGSINLWALDGHKKARSLSHTRDKFVMSVAFSPDGKWVASGGLDGLVNIFDV 378
+L ++ EGHRLGV+S+ + G A +SSLDS + WDLE+G+LT + P + WT+ S D R LA G+ G +N+ + +K S+ KFV S+A+ DG +A+G ++GLV+I D+
Sbjct: 48 QLKCLYQFEGHRLGVISVDINSTGTLAASSSLDSQILLWDLETGKLTKTYDGDPADTWTVAFSPDSRFLATGSHTGCVNMINVQTAQKEGSIQ-LEGKFVYSLAYISDGSKLAAGTINGLVSICDL 172
BLAST of mRNA_H-elongata_contig89643.16462.1 vs. uniprot
Match: UPI00158B79C4 (WD repeat-containing protein 61 n=3 Tax=Braconidae TaxID=7402 RepID=UPI00158B79C4) HSP 1 Score: 97.4 bits (241), Expect = 8.710e-22 Identity = 46/121 (38.02%), Postives = 68/121 (56.20%), Query Frame = 1
Query: 16 HSLEGHRLGVLSIRAFNKGKEAVTSSLDSCMRFWDLESGELTAAEEPGPVEAWTLDVSKDDRLLAGGTQKGSINLWALDGHKKARSLSHTRDKFVMSVAFSPDGKWVASGGLDGLVNIFDV 378
H L GH LGV+S+ + G + +SSLDS +R WDLESGE + E GPV+ WT+ S DD + G+ G I+++ + K+ ++L KF +SVA+ ++NIFDV
Sbjct: 76 HKLSGHSLGVVSVAINSDGTKCASSSLDSSLRLWDLESGEKISTIEVGPVDIWTVVFSPDDEFIVSGSHAGKIHMYRTESCKQEQTLDTRAGKFTLSVAYXXXXXXXXXXXXXXIINIFDV 196
BLAST of mRNA_H-elongata_contig89643.16462.1 vs. uniprot
Match: A0A0L0HKJ6_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HKJ6_SPIPD) HSP 1 Score: 96.3 bits (238), Expect = 1.570e-21 Identity = 51/103 (49.51%), Postives = 67/103 (65.05%), Query Frame = 1
Query: 10 PVHSLEGHRLGVLSIRAFNKGKEAVTSSLDSCMRFWDLESGELTAAE--EPGPVEAWTLDVSKDDRLLAGGTQKGSINLWALDGHKKARSLSHTRDKFVMSVA 312
P+H+ EGH+LGV+SI G A ++SLDS +RFWDL T + E GPVEAWT S D R +A G+ G++N+W+++ KK R L TR KFVMSVA
Sbjct: 47 PLHTFEGHQLGVISIDISPDGSTAASTSLDSQIRFWDLIHHTKTDDKTIEAGPVEAWTAVYSPDGRHVATGSHNGNVNIWSVEERKKERPLE-TRGKFVMSVA 148
BLAST of mRNA_H-elongata_contig89643.16462.1 vs. uniprot
Match: A0A6V1M8K3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1M8K3_HETAK) HSP 1 Score: 95.5 bits (236), Expect = 2.530e-21 Identity = 40/87 (45.98%), Postives = 63/87 (72.41%), Query Frame = 1
Query: 1 ELAPVHSLEGHRLGVLSIRAFNKGKEAVTSSLDSCMRFWDLESGELTAAEEPGPVEAWTLDVSKDDRLLAGGTQKGSINLWALDGHK 261
+L +H+ GHRLGV+S++ + G AVTSS+DS +RFWDL++G+ + + GPVEAW+ +S D L+A G+Q+G++NLW + G +
Sbjct: 32 DLQALHTFGGHRLGVISVQTNSTGTGAVTSSIDSVLRFWDLDNGQEDGSIDAGPVEAWSCALSPTDELVAAGSQRGAVNLWRVAGRE 118 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89643.16462.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig89643.16462.1 >prot_H-elongata_contig89643.16462.1 ID=prot_H-elongata_contig89643.16462.1|Name=mRNA_H-elongata_contig89643.16462.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp ELAPVHSLEGHRLGVLSIRAFNKGKEAVTSSLDSCMRFWDLESGELTAAEback to top mRNA from alignment at H-elongata_contig89643:686..2559- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig89643.16462.1 ID=mRNA_H-elongata_contig89643.16462.1|Name=mRNA_H-elongata_contig89643.16462.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1874bp|location=Sequence derived from alignment at H-elongata_contig89643:686..2559- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig89643:686..2559- >mRNA_H-elongata_contig89643.16462.1 ID=mRNA_H-elongata_contig89643.16462.1|Name=mRNA_H-elongata_contig89643.16462.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=756bp|location=Sequence derived from alignment at H-elongata_contig89643:686..2559- (Himanthalia elongata Himel1 dioecious)back to top |