mRNA_H-elongata_contig89511.16451.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig89511.16451.1 vs. uniprot
Match: D7FVU1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVU1_ECTSI) HSP 1 Score: 134 bits (338), Expect = 5.900e-37 Identity = 76/121 (62.81%), Postives = 98/121 (80.99%), Query Frame = 1
Query: 1 LNINSLERPVYKVSKTICLDGIKAELREYEPYLIAESMATGDTMRDATSKGFRNVAGYIFGDNYGSQLSEDGRMEPQKVAMTAPVRTEQXXXXXXXXXXXXX--LRENVRDMTVSFMMPRK 357
++++ LERP Y VSKT+ + + AE+R+YEPYLIAES+ +G+TMR+ T+KGF NVAGYIFGDN G ++SEDG +EP +VAMTAPVRTEQ XXXXXXXXX L+ N R+M VSF+MP+K
Sbjct: 35 VSVSRLERPTYTVSKTVRVGRLAAEVRDYEPYLIAESVVSGETMREGTTKGFMNVAGYIFGDNAGGRVSEDGEVEPAQVAMTAPVRTEQPQKAXXXXXXXXXXXLKSNFRNMKVSFVMPKK 155
BLAST of mRNA_H-elongata_contig89511.16451.1 vs. uniprot
Match: R1D2V2_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D2V2_EMIHU) HSP 1 Score: 72.4 bits (176), Expect = 5.200e-13 Identity = 41/83 (49.40%), Postives = 50/83 (60.24%), Query Frame = 1
Query: 10 NSLERPVYKVSKTICLDGIKAELREYEPYLIAESMATGDTMRDATSKGFRNVAGYIFGDNYGSQLSEDGRMEPQKVAMTAPVR 258
N+LERP Y V + + G ELR Y PYLIAE+ D+MR+A+ KGFR VAGY+FG N K+AMTAPVR
Sbjct: 33 NALERPSYSVVRQL---GGGVELRRYSPYLIAETSVRADSMREASGKGFREVAGYVFGKN----------RPATKMAMTAPVR 102
BLAST of mRNA_H-elongata_contig89511.16451.1 vs. uniprot
Match: A0A7S2QS82_9EUKA (Hypothetical protein n=1 Tax=Norrisiella sphaerica TaxID=552664 RepID=A0A7S2QS82_9EUKA) HSP 1 Score: 68.9 bits (167), Expect = 6.130e-12 Identity = 35/65 (53.85%), Postives = 45/65 (69.23%), Query Frame = 1
Query: 73 ELREYEPYLIAESMATGDTMRDATSKGFRNVAGYIFGDNYGSQLSEDGRME-PQKVAMTAPVRTE 264
ELR+Y PY++AE + D+M+ ATS GFR VAGYIFG N S + + P+K+ MTAPVRTE
Sbjct: 1 ELRKYSPYIVAEVRSNSDSMKKATSSGFRQVAGYIFGKNKERSKSFFSKSDTPRKMRMTAPVRTE 65
BLAST of mRNA_H-elongata_contig89511.16451.1 vs. uniprot
Match: A0A7S2KEE6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KEE6_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 4.560e-11 Identity = 41/81 (50.62%), Postives = 52/81 (64.20%), Query Frame = 1
Query: 16 LERPVYKVSKTICLDGIKAELREYEPYLIAESMATGDTMRDATSKGFRNVAGYIFGDNYGSQLSEDGRMEPQKVAMTAPVR 258
LE+PVY V + + G+ ELR+YEPY+IAE+ G R+ TS GFR AGYIFG N + DG +K+AMTAPVR
Sbjct: 55 LEKPVYTVIQKLP-GGV--ELRQYEPYMIAETTVDGVGFREPTSSGFRACAGYIFGKNKPRRGMADG----EKMAMTAPVR 128
BLAST of mRNA_H-elongata_contig89511.16451.1 vs. uniprot
Match: A0A7S3UFV7_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UFV7_9CHLO) HSP 1 Score: 66.2 bits (160), Expect = 9.360e-11 Identity = 45/118 (38.14%), Postives = 58/118 (49.15%), Query Frame = 1
Query: 7 INSLERPVYKVSKTICLDGIKAELREYEPYLIAESMAT-GDTMRDATSKGFRNVAGYIFGDNYGSQLSEDGRMEPQKVAMTAPVRTEQXXXXXXXXXXXXXLRENVRDMTVSFMMPRK 357
+ LE+P Y+V KT+ K E+R YEPY++AE A G M +A S GFR +AGYIF + QK+AMT+PVR E E VSF+MP K
Sbjct: 24 VKKLEKPKYRVVKTLLGKKNKVEIRTYEPYVVAEYEAKEGTDMDNALSGGFRAIAGYIF-------ARDQPETTKQKIAMTSPVRLEM---------------EGGEKHKVSFVMPSK 119
BLAST of mRNA_H-elongata_contig89511.16451.1 vs. uniprot
Match: A0A7S2C2M5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C2M5_9STRA) HSP 1 Score: 66.2 bits (160), Expect = 1.140e-10 Identity = 41/86 (47.67%), Postives = 51/86 (59.30%), Query Frame = 1
Query: 10 NSLERPVYKVSKTICLDGIKAELREYEPYLIAE-SMATGDTMRDATSKGFRNVAGYIFGDNYGSQLSEDGRMEP-QKVAMTAPVRT 261
N LE+P Y V + + E+REYE Y +AE + DTM+ T+KGFR VAGYIFG N EP +K+AMTAPVRT
Sbjct: 33 NRLEKPKYTVVQRLARG---VEVREYEAYNVAEITFKRPDTMKAGTAKGFRGVAGYIFGKNRARGRRAAALSEPSEKMAMTAPVRT 115
BLAST of mRNA_H-elongata_contig89511.16451.1 vs. uniprot
Match: UPI001F16B749 (heme-binding protein n=2 Tax=Polynucleobacter TaxID=44013 RepID=UPI001F16B749) HSP 1 Score: 63.2 bits (152), Expect = 1.440e-9 Identity = 38/84 (45.24%), Postives = 45/84 (53.57%), Query Frame = 1
Query: 13 SLERPVYKVSKTICLDGIKAELREYEPYLIAESMATGDTMRDATSKGFRNVAGYIFGDNYGSQLSEDGRMEPQKVAMTAPVRTE 264
+LE P Y T+ ELR+Y P +IAE GD M DA SKGFR +AGYIFG N D +K+AMT PV E
Sbjct: 23 ALEEPKY----TVIESAAPFELRQYAPMIIAEVTVDGD-MSDAGSKGFRLIAGYIFGKNQTKANRSDDAKSNEKIAMTVPVTME 101
BLAST of mRNA_H-elongata_contig89511.16451.1 vs. uniprot
Match: A0A0M0JBS8_9EUKA (Soul heme-binding protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JBS8_9EUKA) HSP 1 Score: 63.5 bits (153), Expect = 1.460e-9 Identity = 41/83 (49.40%), Postives = 49/83 (59.04%), Query Frame = 1
Query: 10 NSLERPVYKVSKTICLDGIKAELREYEPYLIAESMATGDTMRDATSKGFRNVAGYIFGDNYGSQLSEDGRMEPQKVAMTAPVR 258
N LERP Y V + + G+ ELR Y PY IAE+ +MR+A+S GFR VAGYIFG N SQ K+ MTAPVR
Sbjct: 43 NVLERPDYTVIRKLP-GGV--ELRRYAPYTIAETAVKTSSMREASSTGFRTVAGYIFGKNKPSQ----------KMKMTAPVR 112
BLAST of mRNA_H-elongata_contig89511.16451.1 vs. uniprot
Match: A0A355Q4C3_9DELT (Heme-binding protein n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A355Q4C3_9DELT) HSP 1 Score: 62.8 bits (151), Expect = 2.400e-9 Identity = 36/93 (38.71%), Postives = 53/93 (56.99%), Query Frame = 1
Query: 1 LNINSLERPVYKVSKTICLDGIKAELREYEPYLIAESMATGDTMRDATSKGFRNVAGYIFGDNYGS----QLSEDGRMEPQKVAMTAPVRTEQ 267
+ + + E P Y+ T DG K E+REY+PYL+AE G+ A+ GFR +A YIFG+N Q++ E + +AMTAPV+ +Q
Sbjct: 42 VGVRAWEEPAYQ---TKLHDG-KFEIREYQPYLVAEVYMEGEDFEQASGDGFRILADYIFGNNLSRSSAVQMAGKAEKESESIAMTAPVQMDQ 130
BLAST of mRNA_H-elongata_contig89511.16451.1 vs. uniprot
Match: A0Y8M3_9GAMM (Uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2143 TaxID=247633 RepID=A0Y8M3_9GAMM) HSP 1 Score: 62.4 bits (150), Expect = 2.450e-9 Identity = 55/115 (47.83%), Postives = 72/115 (62.61%), Query Frame = 1
Query: 7 INSLERPVYKVSKTICLDGIKAELREYEPYLIAESMATGDTMRDATSKGFRNVAGYIFGDNYGSQLSEDGRMEPQKVAMTAPVRTEQXXXXXXXXXXXXXLRENVRDMTVSFMMP 351
I ++E P Y+V + ELR Y P ++AE++ G +M DA+S+GFR +AGYIFGDN S+ G +E KV MTAPV T Q XXXXXXXXXXL+E + F+MP
Sbjct: 18 IMAIEEPKYEVLEVAG----DFELRAYNPMIVAETIVDG-SMDDASSQGFRRIAGYIFGDN----TSKAGEIE--KVNMTAPV-TIQPKAXXXXXXXXXXLKEEKGSWRIHFVMP 120 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89511.16451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig89511.16451.1 >prot_H-elongata_contig89511.16451.1 ID=prot_H-elongata_contig89511.16451.1|Name=mRNA_H-elongata_contig89511.16451.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp LNINSLERPVYKVSKTICLDGIKAELREYEPYLIAESMATGDTMRDATSKback to top mRNA from alignment at H-elongata_contig89511:13..1317- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig89511.16451.1 ID=mRNA_H-elongata_contig89511.16451.1|Name=mRNA_H-elongata_contig89511.16451.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1305bp|location=Sequence derived from alignment at H-elongata_contig89511:13..1317- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig89511:13..1317- >mRNA_H-elongata_contig89511.16451.1 ID=mRNA_H-elongata_contig89511.16451.1|Name=mRNA_H-elongata_contig89511.16451.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig89511:13..1317- (Himanthalia elongata Himel1 dioecious)back to top |