mRNA_H-elongata_contig89511.16451.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig89511.16451.1
Unique NamemRNA_H-elongata_contig89511.16451.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig89511.16451.1 vs. uniprot
Match: D7FVU1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVU1_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 5.900e-37
Identity = 76/121 (62.81%), Postives = 98/121 (80.99%), Query Frame = 1
Query:    1 LNINSLERPVYKVSKTICLDGIKAELREYEPYLIAESMATGDTMRDATSKGFRNVAGYIFGDNYGSQLSEDGRMEPQKVAMTAPVRTEQXXXXXXXXXXXXX--LRENVRDMTVSFMMPRK 357
            ++++ LERP Y VSKT+ +  + AE+R+YEPYLIAES+ +G+TMR+ T+KGF NVAGYIFGDN G ++SEDG +EP +VAMTAPVRTEQ    XXXXXXXXX  L+ N R+M VSF+MP+K
Sbjct:   35 VSVSRLERPTYTVSKTVRVGRLAAEVRDYEPYLIAESVVSGETMREGTTKGFMNVAGYIFGDNAGGRVSEDGEVEPAQVAMTAPVRTEQPQKAXXXXXXXXXXXLKSNFRNMKVSFVMPKK 155          
BLAST of mRNA_H-elongata_contig89511.16451.1 vs. uniprot
Match: R1D2V2_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D2V2_EMIHU)

HSP 1 Score: 72.4 bits (176), Expect = 5.200e-13
Identity = 41/83 (49.40%), Postives = 50/83 (60.24%), Query Frame = 1
Query:   10 NSLERPVYKVSKTICLDGIKAELREYEPYLIAESMATGDTMRDATSKGFRNVAGYIFGDNYGSQLSEDGRMEPQKVAMTAPVR 258
            N+LERP Y V + +   G   ELR Y PYLIAE+    D+MR+A+ KGFR VAGY+FG N              K+AMTAPVR
Sbjct:   33 NALERPSYSVVRQL---GGGVELRRYSPYLIAETSVRADSMREASGKGFREVAGYVFGKN----------RPATKMAMTAPVR 102          
BLAST of mRNA_H-elongata_contig89511.16451.1 vs. uniprot
Match: A0A7S2QS82_9EUKA (Hypothetical protein n=1 Tax=Norrisiella sphaerica TaxID=552664 RepID=A0A7S2QS82_9EUKA)

HSP 1 Score: 68.9 bits (167), Expect = 6.130e-12
Identity = 35/65 (53.85%), Postives = 45/65 (69.23%), Query Frame = 1
Query:   73 ELREYEPYLIAESMATGDTMRDATSKGFRNVAGYIFGDNYGSQLSEDGRME-PQKVAMTAPVRTE 264
            ELR+Y PY++AE  +  D+M+ ATS GFR VAGYIFG N     S   + + P+K+ MTAPVRTE
Sbjct:    1 ELRKYSPYIVAEVRSNSDSMKKATSSGFRQVAGYIFGKNKERSKSFFSKSDTPRKMRMTAPVRTE 65          
BLAST of mRNA_H-elongata_contig89511.16451.1 vs. uniprot
Match: A0A7S2KEE6_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KEE6_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 4.560e-11
Identity = 41/81 (50.62%), Postives = 52/81 (64.20%), Query Frame = 1
Query:   16 LERPVYKVSKTICLDGIKAELREYEPYLIAESMATGDTMRDATSKGFRNVAGYIFGDNYGSQLSEDGRMEPQKVAMTAPVR 258
            LE+PVY V + +   G+  ELR+YEPY+IAE+   G   R+ TS GFR  AGYIFG N   +   DG    +K+AMTAPVR
Sbjct:   55 LEKPVYTVIQKLP-GGV--ELRQYEPYMIAETTVDGVGFREPTSSGFRACAGYIFGKNKPRRGMADG----EKMAMTAPVR 128          
BLAST of mRNA_H-elongata_contig89511.16451.1 vs. uniprot
Match: A0A7S3UFV7_9CHLO (Hypothetical protein n=1 Tax=Picocystis salinarum TaxID=88271 RepID=A0A7S3UFV7_9CHLO)

HSP 1 Score: 66.2 bits (160), Expect = 9.360e-11
Identity = 45/118 (38.14%), Postives = 58/118 (49.15%), Query Frame = 1
Query:    7 INSLERPVYKVSKTICLDGIKAELREYEPYLIAESMAT-GDTMRDATSKGFRNVAGYIFGDNYGSQLSEDGRMEPQKVAMTAPVRTEQXXXXXXXXXXXXXLRENVRDMTVSFMMPRK 357
            +  LE+P Y+V KT+     K E+R YEPY++AE  A  G  M +A S GFR +AGYIF         +      QK+AMT+PVR E                E      VSF+MP K
Sbjct:   24 VKKLEKPKYRVVKTLLGKKNKVEIRTYEPYVVAEYEAKEGTDMDNALSGGFRAIAGYIF-------ARDQPETTKQKIAMTSPVRLEM---------------EGGEKHKVSFVMPSK 119          
BLAST of mRNA_H-elongata_contig89511.16451.1 vs. uniprot
Match: A0A7S2C2M5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C2M5_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.140e-10
Identity = 41/86 (47.67%), Postives = 51/86 (59.30%), Query Frame = 1
Query:   10 NSLERPVYKVSKTICLDGIKAELREYEPYLIAE-SMATGDTMRDATSKGFRNVAGYIFGDNYGSQLSEDGRMEP-QKVAMTAPVRT 261
            N LE+P Y V + +       E+REYE Y +AE +    DTM+  T+KGFR VAGYIFG N           EP +K+AMTAPVRT
Sbjct:   33 NRLEKPKYTVVQRLARG---VEVREYEAYNVAEITFKRPDTMKAGTAKGFRGVAGYIFGKNRARGRRAAALSEPSEKMAMTAPVRT 115          
BLAST of mRNA_H-elongata_contig89511.16451.1 vs. uniprot
Match: UPI001F16B749 (heme-binding protein n=2 Tax=Polynucleobacter TaxID=44013 RepID=UPI001F16B749)

HSP 1 Score: 63.2 bits (152), Expect = 1.440e-9
Identity = 38/84 (45.24%), Postives = 45/84 (53.57%), Query Frame = 1
Query:   13 SLERPVYKVSKTICLDGIKAELREYEPYLIAESMATGDTMRDATSKGFRNVAGYIFGDNYGSQLSEDGRMEPQKVAMTAPVRTE 264
            +LE P Y    T+       ELR+Y P +IAE    GD M DA SKGFR +AGYIFG N       D     +K+AMT PV  E
Sbjct:   23 ALEEPKY----TVIESAAPFELRQYAPMIIAEVTVDGD-MSDAGSKGFRLIAGYIFGKNQTKANRSDDAKSNEKIAMTVPVTME 101          
BLAST of mRNA_H-elongata_contig89511.16451.1 vs. uniprot
Match: A0A0M0JBS8_9EUKA (Soul heme-binding protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JBS8_9EUKA)

HSP 1 Score: 63.5 bits (153), Expect = 1.460e-9
Identity = 41/83 (49.40%), Postives = 49/83 (59.04%), Query Frame = 1
Query:   10 NSLERPVYKVSKTICLDGIKAELREYEPYLIAESMATGDTMRDATSKGFRNVAGYIFGDNYGSQLSEDGRMEPQKVAMTAPVR 258
            N LERP Y V + +   G+  ELR Y PY IAE+     +MR+A+S GFR VAGYIFG N  SQ          K+ MTAPVR
Sbjct:   43 NVLERPDYTVIRKLP-GGV--ELRRYAPYTIAETAVKTSSMREASSTGFRTVAGYIFGKNKPSQ----------KMKMTAPVR 112          
BLAST of mRNA_H-elongata_contig89511.16451.1 vs. uniprot
Match: A0A355Q4C3_9DELT (Heme-binding protein n=2 Tax=Proteobacteria TaxID=1224 RepID=A0A355Q4C3_9DELT)

HSP 1 Score: 62.8 bits (151), Expect = 2.400e-9
Identity = 36/93 (38.71%), Postives = 53/93 (56.99%), Query Frame = 1
Query:    1 LNINSLERPVYKVSKTICLDGIKAELREYEPYLIAESMATGDTMRDATSKGFRNVAGYIFGDNYGS----QLSEDGRMEPQKVAMTAPVRTEQ 267
            + + + E P Y+   T   DG K E+REY+PYL+AE    G+    A+  GFR +A YIFG+N       Q++     E + +AMTAPV+ +Q
Sbjct:   42 VGVRAWEEPAYQ---TKLHDG-KFEIREYQPYLVAEVYMEGEDFEQASGDGFRILADYIFGNNLSRSSAVQMAGKAEKESESIAMTAPVQMDQ 130          
BLAST of mRNA_H-elongata_contig89511.16451.1 vs. uniprot
Match: A0Y8M3_9GAMM (Uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2143 TaxID=247633 RepID=A0Y8M3_9GAMM)

HSP 1 Score: 62.4 bits (150), Expect = 2.450e-9
Identity = 55/115 (47.83%), Postives = 72/115 (62.61%), Query Frame = 1
Query:    7 INSLERPVYKVSKTICLDGIKAELREYEPYLIAESMATGDTMRDATSKGFRNVAGYIFGDNYGSQLSEDGRMEPQKVAMTAPVRTEQXXXXXXXXXXXXXLRENVRDMTVSFMMP 351
            I ++E P Y+V +         ELR Y P ++AE++  G +M DA+S+GFR +AGYIFGDN     S+ G +E  KV MTAPV T Q   XXXXXXXXXXL+E      + F+MP
Sbjct:   18 IMAIEEPKYEVLEVAG----DFELRAYNPMIVAETIVDG-SMDDASSQGFRRIAGYIFGDN----TSKAGEIE--KVNMTAPV-TIQPKAXXXXXXXXXXLKEEKGSWRIHFVMP 120          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig89511.16451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVU1_ECTSI5.900e-3762.81Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
R1D2V2_EMIHU5.200e-1349.40Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A7S2QS82_9EUKA6.130e-1253.85Hypothetical protein n=1 Tax=Norrisiella sphaerica... [more]
A0A7S2KEE6_9STRA4.560e-1150.62Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S3UFV7_9CHLO9.360e-1138.14Hypothetical protein n=1 Tax=Picocystis salinarum ... [more]
A0A7S2C2M5_9STRA1.140e-1047.67Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
UPI001F16B7491.440e-945.24heme-binding protein n=2 Tax=Polynucleobacter TaxI... [more]
A0A0M0JBS8_9EUKA1.460e-949.40Soul heme-binding protein n=1 Tax=Chrysochromulina... [more]
A0A355Q4C3_9DELT2.400e-938.71Heme-binding protein n=2 Tax=Proteobacteria TaxID=... [more]
A0Y8M3_9GAMM2.450e-947.83Uncharacterized protein n=1 Tax=marine gamma prote... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig89511contigH-elongata_contig89511:13..1317 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.7
Seed ortholog evalue7.3e-30
Seed eggNOG ortholog2880.D7FVU1
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009507,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0010287,GO:0016020,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035
EggNOG free text desc.SOUL heme-binding protein
EggNOG OGs2CY9I@1,2S2YK@2759
Ec32 ortholog descriptionSOUL haem-binding protein
Ec32 orthologEc-01_002130.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size375
Cds size375
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931295.3454149-CDS-H-elongata_contig89511:12..2171622931295.3454149-CDS-H-elongata_contig89511:12..217Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89511 13..217 -
1691679777.7366114-CDS-H-elongata_contig89511:12..2171691679777.7366114-CDS-H-elongata_contig89511:12..217Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89511 13..217 -
1622931295.3605304-CDS-H-elongata_contig89511:1147..13171622931295.3605304-CDS-H-elongata_contig89511:1147..1317Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89511 1148..1317 -
1691679777.749317-CDS-H-elongata_contig89511:1147..13171691679777.749317-CDS-H-elongata_contig89511:1147..1317Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig89511 1148..1317 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig89511.16451.1prot_H-elongata_contig89511.16451.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig89511 13..1317 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig89511.16451.1

>prot_H-elongata_contig89511.16451.1 ID=prot_H-elongata_contig89511.16451.1|Name=mRNA_H-elongata_contig89511.16451.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=125bp
LNINSLERPVYKVSKTICLDGIKAELREYEPYLIAESMATGDTMRDATSK
GFRNVAGYIFGDNYGSQLSEDGRMEPQKVAMTAPVRTEQPQKVPMTSPVR
TELRENVRDMTVSFMMPRKVQHSC*
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mRNA from alignment at H-elongata_contig89511:13..1317-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig89511.16451.1 ID=mRNA_H-elongata_contig89511.16451.1|Name=mRNA_H-elongata_contig89511.16451.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1305bp|location=Sequence derived from alignment at H-elongata_contig89511:13..1317- (Himanthalia elongata Himel1 dioecious)
TTGAATATCAACAGCCTGGAGCGACCAGTCTACAAGGTGTCGAAAACCAT TTGTCTGGACGGCATCAAGGCCGAGCTGAGGGAGTACGAGCCCTACTTGA TCGCAGAATCCATGGCGACCGGCGATACCATGAGAGACGCCACCTCGAAA GGATTCAGAAACGTGGCCGGGTACAATGCTCGTTTGGATTCTAGCTATCC TGCTACTAATAGAGCTTTATTATTGTTTTTGATTCCCAATTTCAGCGCAT TGTGTTAACGGTACGACGGCAGGTATACGATACTGTTTTGTGACTGTAAG TGTATCGCACATGCCCACTCTACTAATAGTGGATGTGGGAAAAGAGAGGC GTACAATAATTGGTCCATGGAGTTACCTGAAAAGGCTGCACCAGTTACTC AAGCTACCTTGACGACTGCTGGCTCAGTGTCGGTGGACTCTCGGTGGTAA ACGCCATCGGGACGCAATTGCGTGACCTGATGAAATCGGGACCGATGGCG GTTTGACGGTAGAGATGGACGCTGTCGCGGAAAACGAGGGGATCGTGGGA GTACGCACCATATTCAGCCTACGTTGAGAGAGTGAGCAAGCTGACGCGGG ACGGGACGGGACTGCCGAACCCGTCTCGCGAGACCAAATTCTCAGGCGCG AACGGGTACAGGGTTAAGTCATTTTCCTTGTTCAGCTGACCGCAAGCAAA AAGTAACCAAATCCGGTTGATCTTACTCTGCTACATGTGATAACCACACC TCTTCTATATATGATATATATGTAATGACCACACATATGTCCATTTCGTC TTTAATGCTGGAGAAATACAACTGCAAAACTTGCCGCGAGAAGCCCGGTG CCCTCGTTCACGTTCGGTCAGCCCGGCCGAGGGTGCTGTAGACAAAGCCC AAGCTCAAGCGGCTAGCCGTTATTTATTTTTATTTTCAAGGGAAAGAATC TTCGACGTGTACTATAGGGTCCGACTACTCGCCGTCGCACAGCTTCCCGA TCGATATATATATATTAGGCTATTAAGTATAGCAAATAAGAGTCCCAAAT TACCACTTATCACGCGCACATCTACTATATTATATTATATTATATTATAG ATACATATTTGGAGATAACTACGGAAGCCAGTTGAGCGAAGACGGGAGGA TGGAGCCTCAAAAGGTGGCGATGACGGCCCCTGTTCGGACGGAGCAGCCA CAGAAGGTGCCCATGACCAGCCCGGTGCGCACGGAGCTGCGGGAGAACGT TCGAGACATGACGGTTTCATTTATGATGCCGCGAAAGGTGCAGCATTCGT GCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig89511:13..1317-

>mRNA_H-elongata_contig89511.16451.1 ID=mRNA_H-elongata_contig89511.16451.1|Name=mRNA_H-elongata_contig89511.16451.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=750bp|location=Sequence derived from alignment at H-elongata_contig89511:13..1317- (Himanthalia elongata Himel1 dioecious)
TTGAATATCAACAGCCTGGAGCGACCAGTCTACAAGGTGTCGAAAACCAT
TTGTCTGGACGGCATCAAGGCCGAGCTGAGGGAGTACGAGCCCTACTTGA
TCGCAGAATCCATGGCGACCGGCGATACCATGAGAGACGCCACCTCGAAA
GGATTCAGAAACGTGGCCGGTTGAATATCAACAGCCTGGAGCGACCAGTC
TACAAGGTGTCGAAAACCATTTGTCTGGACGGCATCAAGGCCGAGCTGAG
GGAGTACGAGCCCTACTTGATCGCAGAATCCATGGCGACCGGCGATACCA
TGAGAGACGCCACCTCGAAAGGATTCAGAAACGTGGCCGGATACATATTT
GGAGATAACTACGGAAGCCAGTTGAGCGAAGACGGGAGGATGGAGCCTCA
AAAGGTGGCGATGACGGCCCCTGTTCGGACGGAGCAGCCACAGAAGGTGC
CCATGACCAGCCCGGTGCGCACGGAGCTGCGGGAGAACGTTCGAGACATG
ACGGTTTCATTTATGATGCCGCGAAAGGTGCAGCATTCGTGCTAAATACA
TATTTGGAGATAACTACGGAAGCCAGTTGAGCGAAGACGGGAGGATGGAG
CCTCAAAAGGTGGCGATGACGGCCCCTGTTCGGACGGAGCAGCCACAGAA
GGTGCCCATGACCAGCCCGGTGCGCACGGAGCTGCGGGAGAACGTTCGAG
ACATGACGGTTTCATTTATGATGCCGCGAAAGGTGCAGCATTCGTGCTAA
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