mRNA_H-elongata_contig8887.16396.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8887.16396.1
Unique NamemRNA_H-elongata_contig8887.16396.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig8887.16396.1 vs. uniprot
Match: D7G075_ECTSI (DNA-directed RNA polymerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G075_ECTSI)

HSP 1 Score: 476 bits (1224), Expect = 2.310e-166
Identity = 233/244 (95.49%), Postives = 237/244 (97.13%), Query Frame = 1 
Query:    1 VGDKFSSRHGQKGVCGIIVPQVDMPFSDAGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLNGHLAYGTAFGEEFGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHM----MHARARGPRAVLTRQPTEGRSKDGGLRLGEMERDCLIGYGASALIMERLMISSDAFTANVCQGCGLLGYSGWCQNCRSPEKMADIRLPYACKLLFQELQSMNIVPRLKLQDF 720
            VGDKFSSRHGQKGVCGIIVPQ DMPF+D+GICPDLIMNPHGFPSRMTVGKMVELVAGKAGVL+GH AYGTAFGEE GSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHM    MHARARGPRAVLTRQPTEGRS+DGGLRLGEMERDCLIGYGASALIMERLMISSDAFTANVCQGCGLLGYSGWCQNCRSPEKMADIRLPYACKLLFQELQSMNIVPRLKLQDF
Sbjct:  208 VGDKFSSRHGQKGVCGIIVPQEDMPFADSGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLHGHQAYGTAFGEEHGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASALIMERLMISSDAFTANVCQGCGLLGYSGWCQNCRSPEKMADIRLPYACKLLFQELQSMNIVPRLKLQDF 451
[Close]
BLAST of mRNA_H-elongata_contig8887.16396.1 vs. uniprot
Match: A0A812TJY5_SYMMI (DNA-directed RNA polymerase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812TJY5_SYMMI)

HSP 1 Score: 414 bits (1063), Expect = 6.280e-144
Identity = 198/244 (81.15%), Postives = 218/244 (89.34%), Query Frame = 1 
Query:    1 VGDKFSSRHGQKGVCGIIVPQVDMPFSDAGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLNGHLAYGTAFGEEFGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHM----MHARARGPRAVLTRQPTEGRSKDGGLRLGEMERDCLIGYGASALIMERLMISSDAFTANVCQGCGLLGYSGWCQNCRSPEKMADIRLPYACKLLFQELQSMNIVPRLKLQDF 720
            VGDKFSSRHGQKGVCGIIV Q DMPFS+ G+CPDLIMNPHGFPSRMTVGKM+ELVAGKAGV  G   YGTAFGEEFG+AD+V + C+ LV+ GYSYVGKD++TSG  GEPL +YIFAGPVFYQKLKHM    MHAR+RGPRAVLTRQPTEGRS+DGGLRLGEMERDCLIGYGAS L+MERLMISSDAFTANVC+GCG+LGY GWCQ CR+ +KM++IRLPYACKLLFQELQSMNI  RL LQDF
Sbjct:   72 VGDKFSSRHGQKGVCGIIVNQEDMPFSETGVCPDLIMNPHGFPSRMTVGKMIELVAGKAGVFEGRQGYGTAFGEEFGNADKVEVACETLVKHGYSYVGKDIMTSGITGEPLQSYIFAGPVFYQKLKHMVMDKMHARSRGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASNLVMERLMISSDAFTANVCEGCGMLGYEGWCQGCRNGDKMSNIRLPYACKLLFQELQSMNIATRLHLQDF 315
[Close]
BLAST of mRNA_H-elongata_contig8887.16396.1 vs. uniprot
Match: A0A835Z565_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z565_9STRA)

HSP 1 Score: 423 bits (1088), Expect = 2.540e-137
Identity = 203/244 (83.20%), Postives = 222/244 (90.98%), Query Frame = 1 
Query:    1 VGDKFSSRHGQKGVCGIIVPQVDMPFSDAGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLNGHLAYGTAFGEEFGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHM----MHARARGPRAVLTRQPTEGRSKDGGLRLGEMERDCLIGYGASALIMERLMISSDAFTANVCQGCGLLGYSGWCQNCRSPEKMADIRLPYACKLLFQELQSMNIVPRLKLQDF 720
            VGDKFSSRHGQKGVCGIIVPQ DMPFS+ GICPDLIMNPHGFPSRMTVGKM+EL+AGKAGVL+GH AYGTAFGEEFG+AD+V   CQALV+RG+SY GKD+L SG  GEP++NYIFAGPVFYQKLKHM    MHARARGPRA LTRQPTEGRS+DGGLRLGEMERDCLIGYGASALIMERLMISSDAFTA VC+GCGLLGY GWCQ CR P+ M+ I +PYACKLLFQELQSMNIVPRL+LQ++
Sbjct:  938 VGDKFSSRHGQKGVCGIIVPQADMPFSEMGICPDLIMNPHGFPSRMTVGKMIELIAGKAGVLHGHQAYGTAFGEEFGNADKVTDICQALVDRGFSYCGKDILMSGINGEPVLNYIFAGPVFYQKLKHMVMDKMHARARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIGYGASALIMERLMISSDAFTAYVCEGCGLLGYQGWCQGCRRPDSMSSISVPYACKLLFQELQSMNIVPRLRLQEY 1181
[Close]
BLAST of mRNA_H-elongata_contig8887.16396.1 vs. uniprot
Match: M4C4I9_HYAAE (DNA-directed RNA polymerase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C4I9_HYAAE)

HSP 1 Score: 387 bits (995), Expect = 1.130e-133
Identity = 185/244 (75.82%), Postives = 212/244 (86.89%), Query Frame = 1 
Query:    1 VGDKFSSRHGQKGVCGIIVPQVDMPFSDAGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLNGHLAYGTAFGEEFGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHM----MHARARGPRAVLTRQPTEGRSKDGGLRLGEMERDCLIGYGASALIMERLMISSDAFTANVCQGCGLLGYSGWCQNCRSPEKMADIRLPYACKLLFQELQSMNIVPRLKLQDF 720
            +GDKFSSRHGQKGVCG I  Q DMPF+D GICPDLIMNPHGFPSRMTVGKM+EL+AGKAGVL G  AYGTAFGE++GSAD V  C + LV+ G++Y GKD LTSG  GEP+  YIF GP++YQKLKHM    MHARARGPRAVLTRQPTEGRS+DGGLRLGEMERDCLIGYGAS L+MERLM+SSDAF+A+VCQGC +LGY GWCQ+C+S EK+  IR+PYACKLLFQELQ+MNIVPRL L+++
Sbjct:   66 IGDKFSSRHGQKGVCGTIRNQEDMPFNDQGICPDLIMNPHGFPSRMTVGKMIELIAGKAGVLTGRRAYGTAFGEKYGSADHVLDCSRELVKNGFNYAGKDYLTSGITGEPIECYIFMGPIYYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLMERLMLSSDAFSADVCQGCRMLGYEGWCQHCKSEEKVVSIRIPYACKLLFQELQAMNIVPRLTLKEY 309
[Close]
BLAST of mRNA_H-elongata_contig8887.16396.1 vs. uniprot
Match: I2CNY0_NANGC (DNA-directed RNA polymerase subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=I2CNY0_NANGC)

HSP 1 Score: 411 bits (1056), Expect = 1.700e-132
Identity = 198/244 (81.15%), Postives = 219/244 (89.75%), Query Frame = 1 
Query:    1 VGDKFSSRHGQKGVCGIIVPQVDMPFSDAGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLNGHLAYGTAFGEEFGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHM----MHARARGPRAVLTRQPTEGRSKDGGLRLGEMERDCLIGYGASALIMERLMISSDAFTANVCQGCGLLGYSGWCQNCRSPEKMADIRLPYACKLLFQELQSMNIVPRLKLQDF 720
            VGDKFSSRHGQKGVCGIIV Q DMPF+D GICPDLIMNPHGFPSRMTVGK++E VAGKA V+ G  AYGTAFGE+FGSADRV  C  ALVE G+SYVGK+++TSGT GEPL+ YIF GPVFYQKLKHM    MHARARGPRAVLTRQPTEGRS+DGGLRLGEMERDCLIGYGAS+L+ ERLMISSDAFTA VC+ CGLLGY+GWCQ+CRS E+MADIRLPYACKLLFQELQSMN++P+LKL +F
Sbjct:  954 VGDKFSSRHGQKGVCGIIVAQEDMPFNDDGICPDLIMNPHGFPSRMTVGKLIEFVAGKASVMIGRQAYGTAFGEDFGSADRVVACSGALVENGFSYVGKEIITSGTSGEPLLTYIFQGPVFYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASSLLTERLMISSDAFTATVCERCGLLGYAGWCQSCRSSERMADIRLPYACKLLFQELQSMNVIPKLKLMEF 1197
[Close]
BLAST of mRNA_H-elongata_contig8887.16396.1 vs. uniprot
Match: A0A7S2GFG3_9STRA (DNA-directed RNA polymerase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GFG3_9STRA)

HSP 1 Score: 379 bits (974), Expect = 1.090e-130
Identity = 185/247 (74.90%), Postives = 209/247 (84.62%), Query Frame = 1 
Query:    1 VGDKFSSRHGQKGVCGIIVPQVDMPFSDAGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLNGHLAYGTAFGEEFGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHM----MHARARGPRAVLTRQPTEGRSKDGGLRLGEMERDCLIGYGASALIMERLMISSDAFTANVCQGCGLLGYSG----WCQNCRSPEKMADIRLPYACKLLFQELQSMNIVPRLKLQD 717
            VGDKF+SRHGQKGVCG+IV Q ++PF++ GICPDLIMNPHGFPSRMTVGK++ELV GKAGV+NGH  Y TAFGE+FG+AD+V    Q LV  G+SYV KDMLTSG  GEPL  YIF GPVFYQKLKHM    MHARARGPRAVLTRQPTEGRS+DGGLRLGEMERDCL+GYGA+ALI ERLM SSDAFTA+VC+ C L+GY G    WCQNCRS E M D++LPYACKLLFQELQSMNI P+L L++
Sbjct:   48 VGDKFASRHGQKGVCGLIVNQENLPFNETGICPDLIMNPHGFPSRMTVGKIIELVVGKAGVMNGHQGYATAFGEDFGNADKVVEASQELVRHGFSYVAKDMLTSGITGEPLSAYIFMGPVFYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLVGYGAAALISERLMTSSDAFTAHVCKKCNLIGYLGEKGMWCQNCRSAENMTDMKLPYACKLLFQELQSMNITPKLHLEE 294
[Close]
BLAST of mRNA_H-elongata_contig8887.16396.1 vs. uniprot
Match: A0A7S3H3I2_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3I2_9STRA)

HSP 1 Score: 402 bits (1033), Expect = 1.850e-130
Identity = 194/244 (79.51%), Postives = 214/244 (87.70%), Query Frame = 1 
Query:    1 VGDKFSSRHGQKGVCGIIVPQVDMPFSDAGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLNGHLAYGTAFGEEFGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHM----MHARARGPRAVLTRQPTEGRSKDGGLRLGEMERDCLIGYGASALIMERLMISSDAFTANVCQGCGLLGYSGWCQNCRSPEKMADIRLPYACKLLFQELQSMNIVPRLKLQDF 720
            VGDKFSSRHGQKGVCG+I+ Q DMPFS+ GICPDLIMNPHGFPSRMTVGKM+ELV+GKA V  G   YG+AFGEEFG+ADRV + C  LV+ GYSYVGKD+LTSG  GEPL +Y+F GPVFYQKLKHM    MHARA+GPRAVLTRQPTEGRS+DGGLRLGEMERDCLIGYGAS LIMERLMISSDAFTANVC+ CGLLGY GWCQ CRS +K++ IRLPYACKLLFQELQSMNI  RL+LQD+
Sbjct:  795 VGDKFSSRHGQKGVCGLILNQEDMPFSERGICPDLIMNPHGFPSRMTVGKMIELVSGKAAVFEGRQGYGSAFGEEFGNADRVEVSCATLVKHGYSYVGKDILTSGITGEPLESYVFMGPVFYQKLKHMVMDKMHARAKGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASNLIMERLMISSDAFTANVCENCGLLGYEGWCQRCRSGDKVSSIRLPYACKLLFQELQSMNIATRLRLQDY 1038
[Close]
BLAST of mRNA_H-elongata_contig8887.16396.1 vs. uniprot
Match: A0A7S1V8C7_9STRA (DNA-directed RNA polymerase n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V8C7_9STRA)

HSP 1 Score: 377 bits (967), Expect = 9.080e-128
Identity = 184/243 (75.72%), Postives = 205/243 (84.36%), Query Frame = 1 
Query:    1 VGDKFSSRHGQKGVCGIIVPQVDMPFSDAGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLNGHLAYGTAFGEEFGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHMM----HARARGPRAVLTRQPTEGRSKDGGLRLGEMERDCLIGYGASALIMERLMISSDAFTANVCQGCGLLGYSGWCQNCRSPEKMADIRLPYACKLLFQELQSMNIVPRLKLQD 717
            VGDKF+SRHGQKGVCG+IVPQ DMPF++ GI PDLIMNPHGFPSRMTVGK++EL+ GKAGV  G  AYG+AFGEE GSAD      +AL+  G +Y GKD++ SGT GEPL  YIF GPVFYQKLKHM+    HARARGPRAVLTRQPTEGRS+DGGLRLGEMERDCLI YGAS LIMERLM SSDAF+ANVC  CGLL Y  WCQ CRS EK+ADIRLPYACKLLFQELQSMN++PRL+L+D
Sbjct:  178 VGDKFASRHGQKGVCGLIVPQADMPFNEFGISPDLIMNPHGFPSRMTVGKLLELLVGKAGVYEGRQAYGSAFGEEHGSADTAEAASEALIRNGLNYTGKDVMYSGTSGEPLNAYIFQGPVFYQKLKHMVLDKAHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGASNLIMERLMHSSDAFSANVCMTCGLLQYENWCQYCRSGEKVADIRLPYACKLLFQELQSMNVLPRLRLRD 420
[Close]
BLAST of mRNA_H-elongata_contig8887.16396.1 vs. uniprot
Match: A0A6U4JF41_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4JF41_9STRA)

HSP 1 Score: 394 bits (1013), Expect = 1.320e-126
Identity = 192/241 (79.67%), Postives = 210/241 (87.14%), Query Frame = 1 
Query:    1 VGDKFSSRHGQKGVCGIIVPQVDMPFSDAGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLNGHLAYGTAFGEEFGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHM----MHARARGPRAVLTRQPTEGRSKDGGLRLGEMERDCLIGYGASALIMERLMISSDAFTANVCQGCGLLGYSGWCQNCRSPEKMADIRLPYACKLLFQELQSMNIVPRLKL 711
            VGDKFSSRHGQKGVCGIIVPQ DMPF++ GICPDLIMNPHGFPSRMTVGKM+EL+ GKAGVL G  AYGTAFGE+FG+ADRV    + LV  G+SY GKD+LTSGT GE + +YIF GPVFYQKLKHM    MHARARGPRAVLTRQPTEGRS+DGGLRLGEMERDCLIGYGAS LIMERLM+SSD FTA VC+ CGLL   GWCQNCRS E +AD+RLPYACKLLFQELQSMNI+PRL+L
Sbjct:  902 VGDKFSSRHGQKGVCGIIVPQEDMPFNNDGICPDLIMNPHGFPSRMTVGKMIELLTGKAGVLRGRQAYGTAFGEDFGNADRVQFASEELVRHGFSYYGKDILTSGTSGEQICSYIFMGPVFYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASNLIMERLMLSSDQFTATVCEKCGLLQRPGWCQNCRSDEAIADVRLPYACKLLFQELQSMNIIPRLRL 1142
[Close]
BLAST of mRNA_H-elongata_contig8887.16396.1 vs. uniprot
Match: A0A7S3DSU4_9STRA (DNA-directed RNA polymerase n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DSU4_9STRA)

HSP 1 Score: 366 bits (939), Expect = 1.030e-125
Identity = 178/243 (73.25%), Postives = 200/243 (82.30%), Query Frame = 1 
Query:    1 VGDKFSSRHGQKGVCGIIVPQVDMPFSDAGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLNGHLAYGTAFGEEFGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHMM----HARARGPRAVLTRQPTEGRSKDGGLRLGEMERDCLIGYGASALIMERLMISSDAFTANVCQGCGLLGYSGWCQNCRSPEKMADIRLPYACKLLFQELQSMNIVPRLKLQD 717
            +GDKF+SRHGQKGVCG+IVP+ D+PF++ G  PDLIMNPHGFPSRMTVGK++EL+ GKA V  G   Y TAFGEEFGSAD      +AL+  G +Y GKD   SGT GE L  YIF+GPVFYQKLKHM+    HARARGPRAVLTRQPTEGRS+DGGLRLGEMERDCLI YGAS LIMERLM SSDAF+ANVC  CGLL Y  WCQ CRS EK+ADIRLPYACKLLFQELQSMN++PRL+L+D
Sbjct:   28 IGDKFASRHGQKGVCGLIVPEQDLPFNEYGHAPDLIMNPHGFPSRMTVGKLLELLVGKAAVFEGRQGYSTAFGEEFGSADTAEAASEALIRNGLNYTGKDTFYSGTNGEALDGYIFSGPVFYQKLKHMVLDKAHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGASNLIMERLMHSSDAFSANVCMTCGLLQYQNWCQYCRSGEKVADIRLPYACKLLFQELQSMNVLPRLRLKD 270
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8887.16396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G075_ECTSI2.310e-16695.49DNA-directed RNA polymerase n=2 Tax=Ectocarpus Tax... [more]
A0A812TJY5_SYMMI6.280e-14481.15DNA-directed RNA polymerase n=1 Tax=Symbiodinium m... [more]
A0A835Z565_9STRA2.540e-13783.20DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
M4C4I9_HYAAE1.130e-13375.82DNA-directed RNA polymerase n=1 Tax=Hyaloperonospo... [more]
I2CNY0_NANGC1.700e-13281.15DNA-directed RNA polymerase subunit beta n=3 Tax=M... [more]
A0A7S2GFG3_9STRA1.090e-13074.90DNA-directed RNA polymerase n=1 Tax=Dictyocha spec... [more]
A0A7S3H3I2_9STRA1.850e-13079.51DNA-directed RNA polymerase subunit beta n=1 Tax=S... [more]
A0A7S1V8C7_9STRA9.080e-12875.72DNA-directed RNA polymerase n=2 Tax=Grammatophora ... [more]
A0A6U4JF41_9STRA1.320e-12679.67DNA-directed RNA polymerase subunit beta n=1 Tax=P... [more]
A0A7S3DSU4_9STRA1.030e-12573.25DNA-directed RNA polymerase n=1 Tax=Amphiprora pal... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8887contigH-elongata_contig8887:2934..9435 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score481.5
Seed ortholog evalue2.3e-133
Seed eggNOG ortholog2880.D7G075
Preferred namePOLR3B
KEGG rclassRC02795
KEGG koko:K03010,ko:K03021
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko04623,ko05016,ko05169,map00230,map00240,map01100,map03020,map04623,map05016,map05169
KEGG ModuleM00180,M00181
GOsGO:0000428,GO:0001817,GO:0001819,GO:0002682,GO:0002684,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005730,GO:0005736,GO:0005737,GO:0005829,GO:0006139,GO:0006351,GO:0006360,GO:0006383,GO:0006399,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009553,GO:0009561,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0031347,GO:0031349,GO:0031974,GO:0031981,GO:0032479,GO:0032481,GO:0032501,GO:0032502,GO:0032648,GO:0032728,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044452,GO:0044464,GO:0045088,GO:0045089,GO:0046483,GO:0048229,GO:0048518,GO:0048583,GO:0048584,GO:0048856,GO:0050776,GO:0050778,GO:0050789,GO:0051239,GO:0051240,GO:0055029,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0080134,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.DNA-directed 5'-3' RNA polymerase activity
EggNOG OGsCOG0085@1,KOG0215@2759
Ec32 ortholog descriptionRNA polymerase Rpb2, OB-fold
Ec32 orthologEc-05_004090.1
EC2.7.7.6
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Hectar predicted targeting categoryother localisation
Exons6
Model size723
Cds size723
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8887.16396.1prot_H-elongata_contig8887.16396.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8887 2934..9435 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931289.6464467-CDS-H-elongata_contig8887:2933..29841622931289.6464467-CDS-H-elongata_contig8887:2933..2984Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8887 2934..2984 -
1691679775.3755572-CDS-H-elongata_contig8887:2933..29841691679775.3755572-CDS-H-elongata_contig8887:2933..2984Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8887 2934..2984 -
1622931289.6633866-CDS-H-elongata_contig8887:3851..39361622931289.6633866-CDS-H-elongata_contig8887:3851..3936Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8887 3852..3936 -
1691679775.3873153-CDS-H-elongata_contig8887:3851..39361691679775.3873153-CDS-H-elongata_contig8887:3851..3936Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8887 3852..3936 -
1622931289.6802468-CDS-H-elongata_contig8887:4899..51021622931289.6802468-CDS-H-elongata_contig8887:4899..5102Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8887 4900..5102 -
1691679775.4033306-CDS-H-elongata_contig8887:4899..51021691679775.4033306-CDS-H-elongata_contig8887:4899..5102Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8887 4900..5102 -
1622931289.6947017-CDS-H-elongata_contig8887:6147..62701622931289.6947017-CDS-H-elongata_contig8887:6147..6270Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8887 6148..6270 -
1691679775.4156308-CDS-H-elongata_contig8887:6147..62701691679775.4156308-CDS-H-elongata_contig8887:6147..6270Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8887 6148..6270 -
1622931289.7143247-CDS-H-elongata_contig8887:8620..87071622931289.7143247-CDS-H-elongata_contig8887:8620..8707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8887 8621..8707 -
1691679775.4234314-CDS-H-elongata_contig8887:8620..87071691679775.4234314-CDS-H-elongata_contig8887:8620..8707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8887 8621..8707 -
1622931289.7265277-CDS-H-elongata_contig8887:9261..94351622931289.7265277-CDS-H-elongata_contig8887:9261..9435Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8887 9262..9435 -
1691679775.432065-CDS-H-elongata_contig8887:9261..94351691679775.432065-CDS-H-elongata_contig8887:9261..9435Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8887 9262..9435 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8887.16396.1

>prot_H-elongata_contig8887.16396.1 ID=prot_H-elongata_contig8887.16396.1|Name=mRNA_H-elongata_contig8887.16396.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=241bp
VGDKFSSRHGQKGVCGIIVPQVDMPFSDAGICPDLIMNPHGFPSRMTVGK
MVELVAGKAGVLNGHLAYGTAFGEEFGSADRVHLCCQALVERGYSYVGKD
MLTSGTGGEPLMNYIFAGPVFYQKLKHMMHARARGPRAVLTRQPTEGRSK
DGGLRLGEMERDCLIGYGASALIMERLMISSDAFTANVCQGCGLLGYSGW
CQNCRSPEKMADIRLPYACKLLFQELQSMNIVPRLKLQDF*
back to top

mRNA from alignment at H-elongata_contig8887:2934..9435-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8887.16396.1 ID=mRNA_H-elongata_contig8887.16396.1|Name=mRNA_H-elongata_contig8887.16396.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6502bp|location=Sequence derived from alignment at H-elongata_contig8887:2934..9435- (Himanthalia elongata Himel1 dioecious)
GTGGGGGACAAGTTCTCGTCCCGTCACGGGCAAAAGGGAGTGTGTGGCAT
CATCGTGCCCCAGGTGGACATGCCGTTCTCCGATGCTGGCATCTGTCCGG
ACCTGATCATGAACCCGCACGGCTTCCCGTCGAGGATGACGGTAGGCAAG
ATGGTTGAGCTCGTGGCCGGAAAGGTGGGCGGACACGACATGGCGTGTGG
GATGTGTGAAAATCGGTGGCGTTGATATAGAACGTTGGGACGTGGGACAC
AGGGTGTGGAATCTGGGGCGTGGGATGTGTAATGTATTCACGTTGGCTGT
GGAACGTCAAGCGTTCAAGATTCAACGTCGGGTTTACAGAATGATCAAGG
CGGGACATGGAAGGTGTGGAGCGTGGGGGACGGATGCCTTGAGAGGGACT
TCCGTTGGGACGTCCCGTGGGGCTATCTCGGCTGTTTTTGGTGGGAGTGT
TTTTACCCCGCCCCGGCCCCCAGCGGCTACCGCGGTTGTCCCCGCACAGA
TTAAAGCCGCAACGGTGTTCCTGTAGTTACTTGGCGTTTGGAGGTTTATG
GAGGCTTTTTGTTTGGAGGTTTATTCCGCAGAAATTCTAGCTCCGACACT
TGTGCCCCCTTTCGCGCTTCTTGGGGAAATTGCCGAACTTGGGTCTCCTA
CACTTTTTTTGCTTTGCTTACTAAGGAAACTCACGAAAAACGCCCCCCTT
CCCCCTCCCCAACCCCACTTGGGTTCAGGCTGGGGTGCTGAACGGGCACC
TGGCGTACGGGACGGCGTTTGGGGAAGAGTTCGGGAGCGCCGATCGAGTG
CATCTTTGCTGTCAGGTGCAAGGGGATGCTGAGACAATATATAATATTTA
TAGAGAAAGAAATATATGCTCTATTATTTCCCAGGGGAAAAGTACGATAC
ACCATACACCAGGTCCTAGTAGTGGAATCAAAACACGCAGTTTATATAAT
ATATTAGTATTATTTTTATTTTTTATTATATATATATATTATTTATTATT
ATTATTACCTTCCTTTAAACCGCCATGCCCACTTTTAATCATAGTGTGTG
TAGGAAAAGAGAGGGGTACAATAATTGGTCCATGGGGTTACCTCAATAGG
CTGCACCCGTTACTCAAGCTACCTTGAGGACTGCTGGCTCAGTGTCGACG
AACTTTCGGTAGTAAACGCCATCGATACGCAATTGCGTAGCCTGATGAAA
TCGGGATTGGTCCGATGGTGGATTGGCTAGAGATGGACGCCGTGGCGGAA
AACGAAAGGATCCCGGGAGTACGAACCAGATTCAGCCTGGGTTGAAAGAA
TGAGCAGGCTGATACGCGACGATGTTGCTGAATCCGTCTCGCGAGACCAA
ATTATCAGGCACGAACGGGGACAGAGGAAAATTATTTCTCCCTGTTCAGC
TGACCGCGAGCAGAATGCAACCAAATCCGGTTGATCTTACTCTGCTATAT
GTTATGACTGACAACGCCAGTGGTGGCATTAAAAAAAAAACATTTCAGAT
TTTTTTTAAAACTGAATCTATCTAGCAAAAAAAACAATATCCGAAAATTA
TGGAGATTTGCGTTTCCAGAGTCTGCACAAAAAACAAAACAAGTTTTCCT
ATAGAGAATGGTGTATTAAAAAAATACGGTTGGTTGTTTTCCTATGGAGA
ATGATCTATTAGAGAAAGAAATAAAGATTTTGCAAATGGGGAAAACGATT
AATCACATGTGATGATTTTGTGCTCAAAGGTAGTAAGAATGTAAACATTC
CAACCTGACGATAGTTTGTTGGTCCCCTGGACTGCACCTCTCACGGTGCT
AAGAAGGCGTGGATGTTCGGAGGGTTGGAATTAGTTCATGTATTTTGAAA
TAAAAATTGCACACGTGAACCAGAGATATGTGGATAAGGGATATGTTGGT
ACTAATAGGCGCCACAGGCCTATCAATCTGGTCCGAAATAGAAGGACCGT
TTGGGTCCAAATGTTGATATCTTGGGATAGAGAAGGATATTTTTTTACAC
AAATTTTTGAATTTTGTTTCTTCTCAGACTTGGCGCCGCGGAAAAAAGCT
AAAGTGGTCCTTATATTTAGGGATATATAAATGGTCCTTATACCCCGGGG
ATGTTTCCTTTCTCCTGACCCCTGGGTATGGTCCTAACCCATAACATTTC
CTCTTTGGTGTCTAACCCATAACATCAGCATACGGTGCCGAAAGGTGAAA
CGGTCCTTATATTTCGGACCAGAGTGTTATATATTAACAGCACGTTGAAT
GGTTGAATAGCCCTATCGGTGGAGAGTGAGGTAATACAAACATGGAGACT
AGGGCGAGGGGGGAAGGAGGAGGAAGAAGCAAGCATGCTGGAAAGGTTTC
CATCTTATATGGTCGATCCGACTCTTACGCTCTCCGGGCGACAAAATGTA
CTGTAAAGAGAAAGGGATCCTCGCTCGAGTCTCCCTGTATCTCCCATGGG
AGAGGTAAAGCGTAGGCGGTCTGTGTATAGCTCTGCAGAGCTTACGTCCC
CTGAGATCCTCGTGCTAGGAGGGCGAAGGCTCTCTACGTTAGCCCTGTAG
GTGCGCGGGGTGGGGGGAATGAGGGGACAGTGTACGGCACTGCTTTTTCT
GACAAGTGGAAAATTCCAAAATTCTGTTTCGTAACTTTACGCTTTTTTTA
CGATTATTATTATTTTTACTCTTTTGCTGTTTGGTATTTTTACAGAGCCT
TGGGAATGGAGGGGGAGGGTAATGACGGGTAAAGTGTCACCCAAAGCAAT
GTTGAAGATGAACGACCAGGTTGAGCAACATAATACACTCTCTCGACCGC
TTTTGTCGAAAATTGAATCCTCGGCTGATCGACAAATTAACATTCTGTTA
TGTGGTTTAGGCTTTTTTTCGATGTAAAGCGTTATCGCCGGGTCAAATAT
ATGGCTATACTTCCCAGTATGTTTTCGGCAAAGTAATACGGGAGCAAAAG
CCGCCTGGTATTTGAGCAATTTGCCTTGCCTATATTGCCTTGCCTTGCCT
TTCTTTTCACTCTTAAGAAGACATGTGGTCAATGATCTAGTGGTCTAACA
GCTAAGGCATGTATAACTTAAGGACCCCTCCCCCCCCCCACCCCTCTCTA
GACAATGACATGAAGTTCTTTATTGCGCTGCGTCTTCCTTTCCCCTTGAT
TATTTTGCCTTCCAGGCTCTCGTAGAGCGTGGCTACAGCTACGTGGGGAA
AGACATGCTCACGTCTGGAACGGGCGGAGAGCCTCTGATGAACTACATCT
TCGCCGGGCCGGTGTTCTACCAGAAGCTCAAGCACATGGTCATGGATAAG
GCGAGAGGGGGGGAGGAGGGAGAGAGCTTGTGATGAGTTGGTGGAGCAGA
TGTCGTTGCCTGTGTTTTTATACGTATTTAATATGGGGGAGGGGTATAAT
AACCAATGCACTCTCTTGTAGAACTAGTCTTACATGCAGATAAGAGCGGG
AGAGCGGGGATAGTCAGACATGGACCACTGGTTGACGAGGGCTTAGAAGT
GCCGAAGTTGTATCGCGATAAAAAGGATATAAGGAGGCATGATTCGGTGG
GGGTTAGAGTTAAGGTTAATCCCTTAGGTCCACAGGCTATGACGGGATGG
GCAACGTTGCAGTAGTAAGTGATATTAAAAAAAACATAGGCCAGATATAT
ATATACAGGGACATATATTAACATACATATATACAGGGACATATATTGAC
ATACATATATACAGGGACATATATTGACATACCTGGTACGTATTACATTC
ATAACACCTAGTGACAAGTCTAATGTTGTTGGTAGTACTATCGAAACATG
GGTGGGCTGTAGACGATTTGACCAAGGATAACTGTACCTTGGGGAGACAC
GGGAGTTCCACACTATCTTCATATTAAACTAGACCTAGTCTAGGTCAGCA
ATCACTGGTATTATTCATACAAAATATTATACAGCAGTAAAATCATGCGG
GGAATCATGTCAGCAACCTCGGGCATACCAGGTACGAACAACAATATATT
TAGATTAAGTAAAACAAAAAAACGAGGAAGTCGCGTCAGCATCATTCCAA
GAAATAATATTCTTAGGGATATGCCCCCCTCCCTCCCGTACCTTCAAAGA
TAGGTAAACAAATATCTACATCTAGAGCCAAAAAGTGGTATAATAGTTAC
AGGTGCCGTGAGGACGGTCGGTACGAGATGCATTGATCGATGAAGAGGAC
AAGGCTGGCTTGATCGTGCTTTCTTTTCTTTTCTTTTTTTGTCAGCCGAA
AAATATACTGGTATTTGGAGATGAAAAATTGTGAGTTCCTTCTTGCCCCC
CCAACCTCCTCTGGGTCTTCATCGAATGACCAGATGCACGCCAGAGCGCG
GGGCCCTCGCGCCGTGCTGACGCGCCAGCCCACCGAGGGTCGCTCGAAGG
ACGGGGGGCTGAGGCTCGGCGAGATGGAGCGAGACTGCCTGATCGGCTAC
GGAGCCAGCGCCTTGATCATGGAGAGACTCATGATCAGCAGCGACGCGTT
TACGGCGAATGTGTGCCAGGGATGCGGGTTGTTAGGGTAAGGAGAGGCGG
GCGTGTCCGAGGTTTGGGGAGATAAGATGCCCTAACCTTTTATTTTGTGT
ATTTATTTATTAGTTGTTTTGTTCCTTCGAGCAGTAAGTCGCACGCTCTG
CTGATTTTTCACTTGGGAGTGTTGGGGGAGGGATGAAATATCCTTGCTCT
AGATGCACAGCTGTGGCGAGGCTTCTTTTTCTCGCTTACGGAGCTTACGT
TTTTTTTTGCTATATTTGAAGTAATCCTGTACCTCCAAGGGGCGAGCTCG
TTGGTACCATGCTGCAATGTTAACCATTAACTTCTAAAGGTTCTATGTAC
TATAAGCATCAATACAATACATTTCTTCAGGTGGGAGCTGCCGCTCTGGA
GAGGCTGAGTTATGGGAGCCCCTATTTGCAAAAGTGTGTTGCAACATGGT
CGACGCCTCCAGAACCACCCCACAACAAACCCTAATGACCGCGGCTGGCT
ATGTGCAGGACGGGGACTATAAAGTAGAACATCCAGGTCATTCACGCGAG
ACGTAAAATTGGTGGACGCAACCCGACCCTAATCAAAATCAAAGTTTACA
GCTGCTGGGCTGAGACTGCTACAGATGCTCTGAATTCACGAAAATTGACT
AAATATATAGCTTTTAGAGAGCCTGCTGTTCTAATCAGCATGAAATCCAG
CCCGTGGTCACAAGGGGAGAAAAACACCATCCGAAAGAAAACCCACGTTT
AACGCACTCTCTAATACAAAATGAAACGGCAATGATGGTTCATAGTCTAA
AATACTAATACTCGGAAAAAAGCGACGTCTCCAAAGAAAAGAAAACATAA
AAATGTTTGATTTATTGGGGTTTGTTTTCTTAGCCCCCATCTCAAGACTT
TTTGTGCTTCTTTTTAAAAATAAAGCAGAATGCACCAAAAAAAGTGATGT
CCCGGGTTCCATTCCTCCCTGTCCCCGCCCTAACAATGCGCTCGACTAGG
TACTCCGGATGGTGCCAGAATTGCCGGAGTCCGGAAAAGATGGCCGATAT
TCGGCTGCCCTACGCGTGCAAGCTCCTATTTCAGGTGCGTCTTGTCTTAA
ATCTATAGGCTAATATATACTTTTTGTGCATTTCGTATAGTATATTACAA
GTATATGTGTGTATTGTACGAGTGTGCTTAGGCGTTCGGGAGATTGATCA
GTATATCTCCTGTTTTTTTATCCAAAGGCCTGTATCGGCTAGGGTATGTA
CTCACGTAGCTGTGACCTCTCGAGCAGAAGAAGCAGGGTTGGTTTCCCAT
TATAAATATAATATAAGAAAATACTTGCTATAACAAAGGTAGTAATGTAC
ACGCTCGGACCTGACTATAGTTGGTCCCATGAATTACACATCTCACGGCG
CCAAGAAGGCGTGGGTGTTCGGAGGGTTGGAATTAGTTCATGTTGCTTTT
AAGAAAAAAGAGAGGCGTATGATCAGTGGTAACCTGAAGTATAGGCTGCA
CTCGTTTCTCGAACTACCTTGAGAACTGCTGGCTCAGTGCCGGTGGACTC
TCGGTAGTAAACGCCATCGGTACGCAATCTCGCGACCTGATGAATTTGGG
ATTGGCCCGATGGCGGTTTGACGGTAGAGATGGACGCCGTCGCGGAAAAC
GATAGTACTGAAGTACAATTTGTTTTTCCATGACGCGTATGTGACCTTTT
ACGAAAAGGGTTTGTATCGTATGAGGGGGCGTTTATCGCCTTGTCGATTC
CTTGGAGTACCATCTTCGCTTCGTTGACGAGGACTCGAGATCCCCACGCA
CAAAGGATTGCTGGGATTTTGCTGTTTTTATTCTTTTGTCACCTGCTGCT
ATGTACGGCATCTGCATCTGACCCCCTCCCCCTTTTAAAATGGTATGTAA
TCCTCTCCCGTTATACCTCCTCTCCTTTCCTGTCCCGCCTTCATATTCCA
GGAGCTGCAGAGCATGAACATCGTGCCGCGGTTGAAGCTCCAAGATTTCT
AG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig8887:2934..9435-

>mRNA_H-elongata_contig8887.16396.1 ID=mRNA_H-elongata_contig8887.16396.1|Name=mRNA_H-elongata_contig8887.16396.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1446bp|location=Sequence derived from alignment at H-elongata_contig8887:2934..9435- (Himanthalia elongata Himel1 dioecious)
GTGGGGGACAAGTTCTCGTCCCGTCACGGGCAAAAGGGAGTGTGTGGCAT
CATCGTGCCCCAGGTGGACATGCCGTTCTCCGATGCTGGCATCTGTCCGG
ACCTGATCATGAACCCGCACGGCTTCCCGTCGAGGATGACGGTAGGCAAG
ATGGTTGAGCTCGTGGCCGGAAAGGTGGGGGACAAGTTCTCGTCCCGTCA
CGGGCAAAAGGGAGTGTGTGGCATCATCGTGCCCCAGGTGGACATGCCGT
TCTCCGATGCTGGCATCTGTCCGGACCTGATCATGAACCCGCACGGCTTC
CCGTCGAGGATGACGGTAGGCAAGATGGTTGAGCTCGTGGCCGGAAAGGC
TGGGGTGCTGAACGGGCACCTGGCGTACGGGACGGCGTTTGGGGAAGAGT
TCGGGAGCGCCGATCGAGTGCATCTTTGCTGTCAGGCTGGGGTGCTGAAC
GGGCACCTGGCGTACGGGACGGCGTTTGGGGAAGAGTTCGGGAGCGCCGA
TCGAGTGCATCTTTGCTGTCAGGCTCTCGTAGAGCGTGGCTACAGCTACG
TGGGGAAAGACATGCTCACGTCTGGAACGGGCGGAGAGCCTCTGATGAAC
TACATCTTCGCCGGGCCGGTGTTCTACCAGAAGCTCAAGCACATGGCTCT
CGTAGAGCGTGGCTACAGCTACGTGGGGAAAGACATGCTCACGTCTGGAA
CGGGCGGAGAGCCTCTGATGAACTACATCTTCGCCGGGCCGGTGTTCTAC
CAGAAGCTCAAGCACATGATGCACGCCAGAGCGCGGGGCCCTCGCGCCGT
GCTGACGCGCCAGCCCACCGAGGGTCGCTCGAAGGACGGGGGGCTGAGGC
TCGGCGAGATGGAGCGAGACTGCCTGATCGGCTACGGAGCCAGCGCCTTG
ATCATGGAGAGACTCATGATCAGCAGCGACGCGTTTACGGCGAATGTGTG
CCAGGGATGCGGGTTGTTAGGATGCACGCCAGAGCGCGGGGCCCTCGCGC
CGTGCTGACGCGCCAGCCCACCGAGGGTCGCTCGAAGGACGGGGGGCTGA
GGCTCGGCGAGATGGAGCGAGACTGCCTGATCGGCTACGGAGCCAGCGCC
TTGATCATGGAGAGACTCATGATCAGCAGCGACGCGTTTACGGCGAATGT
GTGCCAGGGATGCGGGTTGTTAGGGTACTCCGGATGGTGCCAGAATTGCC
GGAGTCCGGAAAAGATGGCCGATATTCGGCTGCCCTACGCGTGCAAGCTC
CTATTTCAGGTACTCCGGATGGTGCCAGAATTGCCGGAGTCCGGAAAAGA
TGGCCGATATTCGGCTGCCCTACGCGTGCAAGCTCCTATTTCAGGAGCTG
CAGAGCATGAACATCGTGCCGCGGTTGAAGCTCCAAGATTTCTAGGAGCT
GCAGAGCATGAACATCGTGCCGCGGTTGAAGCTCCAAGATTTCTAG
back to top