prot_H-elongata_contig8887.16396.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig8887.16396.1
Unique Nameprot_H-elongata_contig8887.16396.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length241
Homology
BLAST of mRNA_H-elongata_contig8887.16396.1 vs. uniprot
Match: D7G075_ECTSI (DNA-directed RNA polymerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G075_ECTSI)

HSP 1 Score: 476 bits (1224), Expect = 2.310e-166
Identity = 233/244 (95.49%), Postives = 237/244 (97.13%), Query Frame = 0
Query:    1 VGDKFSSRHGQKGVCGIIVPQVDMPFSDAGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLNGHLAYGTAFGEEFGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHM----MHARARGPRAVLTRQPTEGRSKDGGLRLGEMERDCLIGYGASALIMERLMISSDAFTANVCQGCGLLGYSGWCQNCRSPEKMADIRLPYACKLLFQELQSMNIVPRLKLQDF 240
            VGDKFSSRHGQKGVCGIIVPQ DMPF+D+GICPDLIMNPHGFPSRMTVGKMVELVAGKAGVL+GH AYGTAFGEE GSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHM    MHARARGPRAVLTRQPTEGRS+DGGLRLGEMERDCLIGYGASALIMERLMISSDAFTANVCQGCGLLGYSGWCQNCRSPEKMADIRLPYACKLLFQELQSMNIVPRLKLQDF
Sbjct:  208 VGDKFSSRHGQKGVCGIIVPQEDMPFADSGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLHGHQAYGTAFGEEHGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASALIMERLMISSDAFTANVCQGCGLLGYSGWCQNCRSPEKMADIRLPYACKLLFQELQSMNIVPRLKLQDF 451          
BLAST of mRNA_H-elongata_contig8887.16396.1 vs. uniprot
Match: A0A812TJY5_SYMMI (DNA-directed RNA polymerase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812TJY5_SYMMI)

HSP 1 Score: 414 bits (1063), Expect = 6.280e-144
Identity = 198/244 (81.15%), Postives = 218/244 (89.34%), Query Frame = 0
Query:    1 VGDKFSSRHGQKGVCGIIVPQVDMPFSDAGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLNGHLAYGTAFGEEFGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHM----MHARARGPRAVLTRQPTEGRSKDGGLRLGEMERDCLIGYGASALIMERLMISSDAFTANVCQGCGLLGYSGWCQNCRSPEKMADIRLPYACKLLFQELQSMNIVPRLKLQDF 240
            VGDKFSSRHGQKGVCGIIV Q DMPFS+ G+CPDLIMNPHGFPSRMTVGKM+ELVAGKAGV  G   YGTAFGEEFG+AD+V + C+ LV+ GYSYVGKD++TSG  GEPL +YIFAGPVFYQKLKHM    MHAR+RGPRAVLTRQPTEGRS+DGGLRLGEMERDCLIGYGAS L+MERLMISSDAFTANVC+GCG+LGY GWCQ CR+ +KM++IRLPYACKLLFQELQSMNI  RL LQDF
Sbjct:   72 VGDKFSSRHGQKGVCGIIVNQEDMPFSETGVCPDLIMNPHGFPSRMTVGKMIELVAGKAGVFEGRQGYGTAFGEEFGNADKVEVACETLVKHGYSYVGKDIMTSGITGEPLQSYIFAGPVFYQKLKHMVMDKMHARSRGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASNLVMERLMISSDAFTANVCEGCGMLGYEGWCQGCRNGDKMSNIRLPYACKLLFQELQSMNIATRLHLQDF 315          
BLAST of mRNA_H-elongata_contig8887.16396.1 vs. uniprot
Match: A0A835Z565_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z565_9STRA)

HSP 1 Score: 423 bits (1088), Expect = 2.540e-137
Identity = 203/244 (83.20%), Postives = 222/244 (90.98%), Query Frame = 0
Query:    1 VGDKFSSRHGQKGVCGIIVPQVDMPFSDAGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLNGHLAYGTAFGEEFGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHM----MHARARGPRAVLTRQPTEGRSKDGGLRLGEMERDCLIGYGASALIMERLMISSDAFTANVCQGCGLLGYSGWCQNCRSPEKMADIRLPYACKLLFQELQSMNIVPRLKLQDF 240
            VGDKFSSRHGQKGVCGIIVPQ DMPFS+ GICPDLIMNPHGFPSRMTVGKM+EL+AGKAGVL+GH AYGTAFGEEFG+AD+V   CQALV+RG+SY GKD+L SG  GEP++NYIFAGPVFYQKLKHM    MHARARGPRA LTRQPTEGRS+DGGLRLGEMERDCLIGYGASALIMERLMISSDAFTA VC+GCGLLGY GWCQ CR P+ M+ I +PYACKLLFQELQSMNIVPRL+LQ++
Sbjct:  938 VGDKFSSRHGQKGVCGIIVPQADMPFSEMGICPDLIMNPHGFPSRMTVGKMIELIAGKAGVLHGHQAYGTAFGEEFGNADKVTDICQALVDRGFSYCGKDILMSGINGEPVLNYIFAGPVFYQKLKHMVMDKMHARARGPRATLTRQPTEGRSRDGGLRLGEMERDCLIGYGASALIMERLMISSDAFTAYVCEGCGLLGYQGWCQGCRRPDSMSSISVPYACKLLFQELQSMNIVPRLRLQEY 1181          
BLAST of mRNA_H-elongata_contig8887.16396.1 vs. uniprot
Match: M4C4I9_HYAAE (DNA-directed RNA polymerase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C4I9_HYAAE)

HSP 1 Score: 387 bits (995), Expect = 1.130e-133
Identity = 185/244 (75.82%), Postives = 212/244 (86.89%), Query Frame = 0
Query:    1 VGDKFSSRHGQKGVCGIIVPQVDMPFSDAGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLNGHLAYGTAFGEEFGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHM----MHARARGPRAVLTRQPTEGRSKDGGLRLGEMERDCLIGYGASALIMERLMISSDAFTANVCQGCGLLGYSGWCQNCRSPEKMADIRLPYACKLLFQELQSMNIVPRLKLQDF 240
            +GDKFSSRHGQKGVCG I  Q DMPF+D GICPDLIMNPHGFPSRMTVGKM+EL+AGKAGVL G  AYGTAFGE++GSAD V  C + LV+ G++Y GKD LTSG  GEP+  YIF GP++YQKLKHM    MHARARGPRAVLTRQPTEGRS+DGGLRLGEMERDCLIGYGAS L+MERLM+SSDAF+A+VCQGC +LGY GWCQ+C+S EK+  IR+PYACKLLFQELQ+MNIVPRL L+++
Sbjct:   66 IGDKFSSRHGQKGVCGTIRNQEDMPFNDQGICPDLIMNPHGFPSRMTVGKMIELIAGKAGVLTGRRAYGTAFGEKYGSADHVLDCSRELVKNGFNYAGKDYLTSGITGEPIECYIFMGPIYYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASMLLMERLMLSSDAFSADVCQGCRMLGYEGWCQHCKSEEKVVSIRIPYACKLLFQELQAMNIVPRLTLKEY 309          
BLAST of mRNA_H-elongata_contig8887.16396.1 vs. uniprot
Match: I2CNY0_NANGC (DNA-directed RNA polymerase subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=I2CNY0_NANGC)

HSP 1 Score: 411 bits (1056), Expect = 1.700e-132
Identity = 198/244 (81.15%), Postives = 219/244 (89.75%), Query Frame = 0
Query:    1 VGDKFSSRHGQKGVCGIIVPQVDMPFSDAGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLNGHLAYGTAFGEEFGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHM----MHARARGPRAVLTRQPTEGRSKDGGLRLGEMERDCLIGYGASALIMERLMISSDAFTANVCQGCGLLGYSGWCQNCRSPEKMADIRLPYACKLLFQELQSMNIVPRLKLQDF 240
            VGDKFSSRHGQKGVCGIIV Q DMPF+D GICPDLIMNPHGFPSRMTVGK++E VAGKA V+ G  AYGTAFGE+FGSADRV  C  ALVE G+SYVGK+++TSGT GEPL+ YIF GPVFYQKLKHM    MHARARGPRAVLTRQPTEGRS+DGGLRLGEMERDCLIGYGAS+L+ ERLMISSDAFTA VC+ CGLLGY+GWCQ+CRS E+MADIRLPYACKLLFQELQSMN++P+LKL +F
Sbjct:  954 VGDKFSSRHGQKGVCGIIVAQEDMPFNDDGICPDLIMNPHGFPSRMTVGKLIEFVAGKASVMIGRQAYGTAFGEDFGSADRVVACSGALVENGFSYVGKEIITSGTSGEPLLTYIFQGPVFYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASSLLTERLMISSDAFTATVCERCGLLGYAGWCQSCRSSERMADIRLPYACKLLFQELQSMNVIPKLKLMEF 1197          
BLAST of mRNA_H-elongata_contig8887.16396.1 vs. uniprot
Match: A0A7S2GFG3_9STRA (DNA-directed RNA polymerase n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GFG3_9STRA)

HSP 1 Score: 379 bits (974), Expect = 1.090e-130
Identity = 185/247 (74.90%), Postives = 209/247 (84.62%), Query Frame = 0
Query:    1 VGDKFSSRHGQKGVCGIIVPQVDMPFSDAGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLNGHLAYGTAFGEEFGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHM----MHARARGPRAVLTRQPTEGRSKDGGLRLGEMERDCLIGYGASALIMERLMISSDAFTANVCQGCGLLGYSG----WCQNCRSPEKMADIRLPYACKLLFQELQSMNIVPRLKLQD 239
            VGDKF+SRHGQKGVCG+IV Q ++PF++ GICPDLIMNPHGFPSRMTVGK++ELV GKAGV+NGH  Y TAFGE+FG+AD+V    Q LV  G+SYV KDMLTSG  GEPL  YIF GPVFYQKLKHM    MHARARGPRAVLTRQPTEGRS+DGGLRLGEMERDCL+GYGA+ALI ERLM SSDAFTA+VC+ C L+GY G    WCQNCRS E M D++LPYACKLLFQELQSMNI P+L L++
Sbjct:   48 VGDKFASRHGQKGVCGLIVNQENLPFNETGICPDLIMNPHGFPSRMTVGKIIELVVGKAGVMNGHQGYATAFGEDFGNADKVVEASQELVRHGFSYVAKDMLTSGITGEPLSAYIFMGPVFYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLVGYGAAALISERLMTSSDAFTAHVCKKCNLIGYLGEKGMWCQNCRSAENMTDMKLPYACKLLFQELQSMNITPKLHLEE 294          
BLAST of mRNA_H-elongata_contig8887.16396.1 vs. uniprot
Match: A0A7S3H3I2_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H3I2_9STRA)

HSP 1 Score: 402 bits (1033), Expect = 1.850e-130
Identity = 194/244 (79.51%), Postives = 214/244 (87.70%), Query Frame = 0
Query:    1 VGDKFSSRHGQKGVCGIIVPQVDMPFSDAGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLNGHLAYGTAFGEEFGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHM----MHARARGPRAVLTRQPTEGRSKDGGLRLGEMERDCLIGYGASALIMERLMISSDAFTANVCQGCGLLGYSGWCQNCRSPEKMADIRLPYACKLLFQELQSMNIVPRLKLQDF 240
            VGDKFSSRHGQKGVCG+I+ Q DMPFS+ GICPDLIMNPHGFPSRMTVGKM+ELV+GKA V  G   YG+AFGEEFG+ADRV + C  LV+ GYSYVGKD+LTSG  GEPL +Y+F GPVFYQKLKHM    MHARA+GPRAVLTRQPTEGRS+DGGLRLGEMERDCLIGYGAS LIMERLMISSDAFTANVC+ CGLLGY GWCQ CRS +K++ IRLPYACKLLFQELQSMNI  RL+LQD+
Sbjct:  795 VGDKFSSRHGQKGVCGLILNQEDMPFSERGICPDLIMNPHGFPSRMTVGKMIELVSGKAAVFEGRQGYGSAFGEEFGNADRVEVSCATLVKHGYSYVGKDILTSGITGEPLESYVFMGPVFYQKLKHMVMDKMHARAKGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASNLIMERLMISSDAFTANVCENCGLLGYEGWCQRCRSGDKVSSIRLPYACKLLFQELQSMNIATRLRLQDY 1038          
BLAST of mRNA_H-elongata_contig8887.16396.1 vs. uniprot
Match: A0A7S1V8C7_9STRA (DNA-directed RNA polymerase n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V8C7_9STRA)

HSP 1 Score: 377 bits (967), Expect = 9.080e-128
Identity = 184/243 (75.72%), Postives = 205/243 (84.36%), Query Frame = 0
Query:    1 VGDKFSSRHGQKGVCGIIVPQVDMPFSDAGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLNGHLAYGTAFGEEFGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHMM----HARARGPRAVLTRQPTEGRSKDGGLRLGEMERDCLIGYGASALIMERLMISSDAFTANVCQGCGLLGYSGWCQNCRSPEKMADIRLPYACKLLFQELQSMNIVPRLKLQD 239
            VGDKF+SRHGQKGVCG+IVPQ DMPF++ GI PDLIMNPHGFPSRMTVGK++EL+ GKAGV  G  AYG+AFGEE GSAD      +AL+  G +Y GKD++ SGT GEPL  YIF GPVFYQKLKHM+    HARARGPRAVLTRQPTEGRS+DGGLRLGEMERDCLI YGAS LIMERLM SSDAF+ANVC  CGLL Y  WCQ CRS EK+ADIRLPYACKLLFQELQSMN++PRL+L+D
Sbjct:  178 VGDKFASRHGQKGVCGLIVPQADMPFNEFGISPDLIMNPHGFPSRMTVGKLLELLVGKAGVYEGRQAYGSAFGEEHGSADTAEAASEALIRNGLNYTGKDVMYSGTSGEPLNAYIFQGPVFYQKLKHMVLDKAHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGASNLIMERLMHSSDAFSANVCMTCGLLQYENWCQYCRSGEKVADIRLPYACKLLFQELQSMNVLPRLRLRD 420          
BLAST of mRNA_H-elongata_contig8887.16396.1 vs. uniprot
Match: A0A6U4JF41_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4JF41_9STRA)

HSP 1 Score: 394 bits (1013), Expect = 1.320e-126
Identity = 192/241 (79.67%), Postives = 210/241 (87.14%), Query Frame = 0
Query:    1 VGDKFSSRHGQKGVCGIIVPQVDMPFSDAGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLNGHLAYGTAFGEEFGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHM----MHARARGPRAVLTRQPTEGRSKDGGLRLGEMERDCLIGYGASALIMERLMISSDAFTANVCQGCGLLGYSGWCQNCRSPEKMADIRLPYACKLLFQELQSMNIVPRLKL 237
            VGDKFSSRHGQKGVCGIIVPQ DMPF++ GICPDLIMNPHGFPSRMTVGKM+EL+ GKAGVL G  AYGTAFGE+FG+ADRV    + LV  G+SY GKD+LTSGT GE + +YIF GPVFYQKLKHM    MHARARGPRAVLTRQPTEGRS+DGGLRLGEMERDCLIGYGAS LIMERLM+SSD FTA VC+ CGLL   GWCQNCRS E +AD+RLPYACKLLFQELQSMNI+PRL+L
Sbjct:  902 VGDKFSSRHGQKGVCGIIVPQEDMPFNNDGICPDLIMNPHGFPSRMTVGKMIELLTGKAGVLRGRQAYGTAFGEDFGNADRVQFASEELVRHGFSYYGKDILTSGTSGEQICSYIFMGPVFYQKLKHMVMDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIGYGASNLIMERLMLSSDQFTATVCEKCGLLQRPGWCQNCRSDEAIADVRLPYACKLLFQELQSMNIIPRLRL 1142          
BLAST of mRNA_H-elongata_contig8887.16396.1 vs. uniprot
Match: A0A7S3DSU4_9STRA (DNA-directed RNA polymerase n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DSU4_9STRA)

HSP 1 Score: 366 bits (939), Expect = 1.030e-125
Identity = 178/243 (73.25%), Postives = 200/243 (82.30%), Query Frame = 0
Query:    1 VGDKFSSRHGQKGVCGIIVPQVDMPFSDAGICPDLIMNPHGFPSRMTVGKMVELVAGKAGVLNGHLAYGTAFGEEFGSADRVHLCCQALVERGYSYVGKDMLTSGTGGEPLMNYIFAGPVFYQKLKHMM----HARARGPRAVLTRQPTEGRSKDGGLRLGEMERDCLIGYGASALIMERLMISSDAFTANVCQGCGLLGYSGWCQNCRSPEKMADIRLPYACKLLFQELQSMNIVPRLKLQD 239
            +GDKF+SRHGQKGVCG+IVP+ D+PF++ G  PDLIMNPHGFPSRMTVGK++EL+ GKA V  G   Y TAFGEEFGSAD      +AL+  G +Y GKD   SGT GE L  YIF+GPVFYQKLKHM+    HARARGPRAVLTRQPTEGRS+DGGLRLGEMERDCLI YGAS LIMERLM SSDAF+ANVC  CGLL Y  WCQ CRS EK+ADIRLPYACKLLFQELQSMN++PRL+L+D
Sbjct:   28 IGDKFASRHGQKGVCGLIVPEQDLPFNEYGHAPDLIMNPHGFPSRMTVGKLLELLVGKAAVFEGRQGYSTAFGEEFGSADTAEAASEALIRNGLNYTGKDTFYSGTNGEALDGYIFSGPVFYQKLKHMVLDKAHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGASNLIMERLMHSSDAFSANVCMTCGLLQYQNWCQYCRSGEKVADIRLPYACKLLFQELQSMNVLPRLRLKD 270          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8887.16396.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G075_ECTSI2.310e-16695.49DNA-directed RNA polymerase n=2 Tax=Ectocarpus Tax... [more]
A0A812TJY5_SYMMI6.280e-14481.15DNA-directed RNA polymerase n=1 Tax=Symbiodinium m... [more]
A0A835Z565_9STRA2.540e-13783.20DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
M4C4I9_HYAAE1.130e-13375.82DNA-directed RNA polymerase n=1 Tax=Hyaloperonospo... [more]
I2CNY0_NANGC1.700e-13281.15DNA-directed RNA polymerase subunit beta n=3 Tax=M... [more]
A0A7S2GFG3_9STRA1.090e-13074.90DNA-directed RNA polymerase n=1 Tax=Dictyocha spec... [more]
A0A7S3H3I2_9STRA1.850e-13079.51DNA-directed RNA polymerase subunit beta n=1 Tax=S... [more]
A0A7S1V8C7_9STRA9.080e-12875.72DNA-directed RNA polymerase n=2 Tax=Grammatophora ... [more]
A0A6U4JF41_9STRA1.320e-12679.67DNA-directed RNA polymerase subunit beta n=1 Tax=P... [more]
A0A7S3DSU4_9STRA1.030e-12573.25DNA-directed RNA polymerase n=1 Tax=Amphiprora pal... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.1800.10coord: 138..239
e-value: 7.4E-38
score: 130.7
NoneNo IPR availablePANTHERPTHR20856:SF8DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC2coord: 1..239
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 1..239
IPR037033DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamilyGENE3D2.40.270.10coord: 1..136
e-value: 2.1E-45
score: 156.9
IPR007120DNA-directed RNA polymerase, subunit 2, hybrid-binding domainPFAMPF00562RNA_pol_Rpb2_6coord: 1..150
e-value: 1.1E-58
score: 199.1
IPR007641RNA polymerase Rpb2, domain 7PFAMPF04560RNA_pol_Rpb2_7coord: 152..237
e-value: 2.2E-32
score: 111.3
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 1..239
IPR007121RNA polymerase, beta subunit, conserved sitePROSITEPS01166RNA_POL_BETAcoord: 2..14

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8887contigH-elongata_contig8887:2934..9435 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8887.16396.1mRNA_H-elongata_contig8887.16396.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig8887 2934..9435 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig8887.16396.1 ID=prot_H-elongata_contig8887.16396.1|Name=mRNA_H-elongata_contig8887.16396.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=241bp
VGDKFSSRHGQKGVCGIIVPQVDMPFSDAGICPDLIMNPHGFPSRMTVGK
MVELVAGKAGVLNGHLAYGTAFGEEFGSADRVHLCCQALVERGYSYVGKD
MLTSGTGGEPLMNYIFAGPVFYQKLKHMMHARARGPRAVLTRQPTEGRSK
DGGLRLGEMERDCLIGYGASALIMERLMISSDAFTANVCQGCGLLGYSGW
CQNCRSPEKMADIRLPYACKLLFQELQSMNIVPRLKLQDF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR037033DNA-dir_RNAP_su2_hyb_sf
IPR007120DNA-dir_RNAP_su2_dom
IPR007641RNA_pol_Rpb2_7
IPR015712DNA-dir_RNA_pol_su2
IPR007121RNA_pol_bsu_CS