mRNA_H-elongata_contig88760.16388.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig88760.16388.1
Unique NamemRNA_H-elongata_contig88760.16388.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig88760.16388.1 vs. uniprot
Match: A0A6H5KGT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGT1_9PHAE)

HSP 1 Score: 281 bits (720), Expect = 2.650e-86
Identity = 149/267 (55.81%), Postives = 181/267 (67.79%), Query Frame = 2
Query:    2 NWERLNLLGSPVARINADHTIRGFTTASADRFRGLQPQFFLAVGARVFANNNIWTSAGLANGVVRVVVHMHWPEGRAPQSLPDVVFVRMEN*SGPQYFEDT-SVDIAGQALDLTNVMPIAPLEVVDDQPPPARRGHGQATRSPGDQRPARYVRTQLPLAVAFAINIHKSQGQALLRAVVDIGSSEQTDGQTFTALSRLRTMEGLLLEDIDLDRLLHIGQGNSFQLRLGAIQRIRDLKDQTRGRKGLPALARTPRVQRPESSSARGQG 799
            NW RLN LG+P+ARINA HTI G+   S++RFRGLQ   FLA+GARVF NNN W SAGLANG V  VVHM W EG+ P  LP+VV+VR+EN  GPQYFE     D A   +DLTN+ PIAP++V+DDQPP  RR  G  T        AR  R QLPL +AF I I+KSQG  LLR  +DIG+SE++DGQ+FTA SR RT+E +LLE   L+R L IG   SFQ RL AI  +R ++D+TR + GLP + RT R  R    + RG G
Sbjct:   43 NWRRLNSLGTPIARINATHTIHGYNAVSSERFRGLQSHIFLAIGARVFVNNNNWVSAGLANGAVGEVVHMQWAEGQTPPQLPEVVWVRVENYRGPQYFEQPLRRDWADGEIDLTNLCPIAPMDVMDDQPPTGRR-RGDGTSI------ARCFRMQLPLMLAFGITIYKSQGNTLLRCFLDIGASERSDGQSFTAFSRCRTLENMLLEPFSLERFLKIGDSRSFQSRLNAIDHVRTVEDRTRRQHGLPPIVRTARPPRTRRRAGRGGG 302          
BLAST of mRNA_H-elongata_contig88760.16388.1 vs. uniprot
Match: A0A6H5KDL6_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDL6_9PHAE)

HSP 1 Score: 276 bits (706), Expect = 1.260e-83
Identity = 146/267 (54.68%), Postives = 180/267 (67.42%), Query Frame = 2
Query:    2 NWERLNLLGSPVARINADHTIRGFTTASADRFRGLQPQFFLAVGARVFANNNIWTSAGLANGVVRVVVHMHWPEGRAPQSLPDVVFVRMEN*SGPQYFEDT-SVDIAGQALDLTNVMPIAPLEVVDDQPPPARRGHGQATRSPGDQRPARYVRTQLPLAVAFAINIHKSQGQALLRAVVDIGSSEQTDGQTFTALSRLRTMEGLLLEDIDLDRLLHIGQGNSFQLRLGAIQRIRDLKDQTRGRKGLPALARTPRVQRPESSSARGQG 799
            NW RLN LG+P+ARINA HTI G+   S++RFRGLQ   FLA+GARVF +N +W SAGLANG V  VVHM W EG+ P  LP+VV+VR+EN  GPQYFE     D A   +DLTN+ PIAP++V+DDQPP  RR  G  T        AR  R QLPL +AF I I+KS G  LLR  +DIG+SE++DGQ+FTA SR RT+E +LLE   L+R L IG   SFQ RL AI  +R ++D+TR + GLP + RT R  R    + RG G
Sbjct:  198 NWRRLNSLGTPIARINATHTIHGYNAVSSERFRGLQSHIFLAIGARVFVHNIVWVSAGLANGAVGEVVHMQWAEGQTPPQLPEVVWVRVENYRGPQYFEQPLRRDWADGEIDLTNLCPIAPMDVMDDQPPTGRR-RGDGTSI------ARCFRMQLPLMLAFGITIYKSHGNTLLRCSLDIGASERSDGQSFTAFSRCRTLENMLLEPFSLERFLKIGDSRSFQSRLNAIDHVRTVEDRTRRQHGLPPIVRTARPPRTRRRAGRGGG 457          
BLAST of mRNA_H-elongata_contig88760.16388.1 vs. uniprot
Match: A0A6H5K558_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K558_9PHAE)

HSP 1 Score: 282 bits (721), Expect = 1.130e-81
Identity = 148/267 (55.43%), Postives = 182/267 (68.16%), Query Frame = 2
Query:    2 NWERLNLLGSPVARINADHTIRGFTTASADRFRGLQPQFFLAVGARVFANNNIWTSAGLANGVVRVVVHMHWPEGRAPQSLPDVVFVRMEN*SGPQYFEDT-SVDIAGQALDLTNVMPIAPLEVVDDQPPPARRGHGQATRSPGDQRPARYVRTQLPLAVAFAINIHKSQGQALLRAVVDIGSSEQTDGQTFTALSRLRTMEGLLLEDIDLDRLLHIGQGNSFQLRLGAIQRIRDLKDQTRGRKGLPALARTPRVQRPESSSARGQG 799
            NW RLN LG+P+ARINA HTI G+   S++RFRGLQ   FLA+GARVF NNN+W SAGLANG V  VVHM W EG+ P  LP+VV+VR+EN  GPQYFE     D A   +DLTN+ PIAP++V+DDQPP  RR  G  T        AR  R QLPL +AF I I+KSQG  LLR  +DIG+SE++DGQ+FTA SR RT+E +LLE   L+R L IG   SFQ RL AI  +R ++++TR + GLP + RT R  R    + RG G
Sbjct:  602 NWRRLNSLGTPIARINATHTIHGYNAVSSERFRGLQSHIFLAIGARVFVNNNVWVSAGLANGAVGEVVHMQWAEGQTPPQLPEVVWVRVENYRGPQYFEQPLRRDWADGEIDLTNLCPIAPMDVMDDQPPTGRR-RGDGTSI------ARCFRMQLPLMLAFGITIYKSQGNTLLRCFLDIGASERSDGQSFTAFSRCRTLENMLLEPFSLERFLKIGDSRSFQSRLNAIDHVRTVENRTRRQHGLPPIVRTARPPRTRRRAGRGGG 861          
BLAST of mRNA_H-elongata_contig88760.16388.1 vs. uniprot
Match: A0A6H5K692_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K692_9PHAE)

HSP 1 Score: 256 bits (654), Expect = 1.730e-71
Identity = 138/261 (52.87%), Postives = 175/261 (67.05%), Query Frame = 2
Query:    2 NWERLNLLGSPVARINADHTIRGFTTASADRFRGLQPQFFLAVGARVFANNNIWTSAGLANGVVRVVVHMHWPEGRAPQSLPDVVFVRMEN*SGPQYF-EDTSVDIAGQALDLTNVMPIAPLEVVDDQPPPA--RRGHGQATRSPGDQRPARYVRTQLPLAVAFAINIHKSQGQALLRAVVDIGSSEQTDGQTFTALSRLRTMEGLLLEDID-LDRLLHIGQGNSFQLRLGAIQRIRDLKDQTRGRKGLPALARTPRVQRP 772
            NW RL  LG+P+ARI+ADH++ G+    +DRFRGL+ Q FLAVGARVF NNN+WTS GLANG    VVHM W  G  P SLP+VV+VR+EN  G QYF E       G+ +DL NV+PI+P++  DD PP A  RRG G  T + G     R +RTQLPL +AF I IHKSQG  LLR  +DIG  E++DGQTFTALSR R ++ +LL+ +  L+RL  IG   +F  RL A+ R+R+L +QTR +  L A+   PR  RP
Sbjct: 1412 NWRRLQALGTPIARIDADHSMHGYAHIPSDRFRGLEGQLFLAVGARVFINNNVWTSGGLANGAAGEVVHMQWAPGTQPPSLPEVVWVRVENYRGEQYFSEPLERPWGGRVVDLRNVVPISPIDAPDDHPPAALRRRGGGANTNAQG-----RCIRTQLPLMLAFGITIHKSQGATLLRCFLDIGEQEKSDGQTFTALSRCRALDNMLLQPLFCLERLQRIGTSRTFGARLDALHRVRELANQTRVQNELDAIDIPPRRHRP 1667          
BLAST of mRNA_H-elongata_contig88760.16388.1 vs. uniprot
Match: A0A6H5KFJ0_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ0_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 5.580e-33
Identity = 65/102 (63.73%), Postives = 77/102 (75.49%), Query Frame = 2
Query:    2 NWERLNLLGSPVARINADHTIRGFTTASADRFRGLQPQFFLAVGARVFANNNIWTSAGLANGVVRVVVHMHWPEGRAPQSLPDVVFVRMEN*SGPQYFEDTS 307
            NW RLN LG+P+ARINA HTI G+   S++RFRGLQ   FLA+GARVF NNN+W SAGLANG V  VVHM W EG+ P  LP+VV+VR+EN  GPQY  + S
Sbjct: 1343 NWRRLNSLGTPIARINATHTIHGYNAVSSERFRGLQSHIFLAIGARVFVNNNVWVSAGLANGAVGEVVHMQWAEGQTPPQLPEVVWVRVENYRGPQYSSNHS 1444          
BLAST of mRNA_H-elongata_contig88760.16388.1 vs. uniprot
Match: A0A6H5K5P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5P8_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 2.420e-30
Identity = 73/146 (50.00%), Postives = 93/146 (63.70%), Query Frame = 2
Query:  362 LEVVDDQPPPARRGHGQATRSPGDQRPARYVRTQLPLAVAFAINIHKSQGQALLRAVVDIGSSEQTDGQTFTALSRLRTMEGLLLEDIDLDRLLHIGQGNSFQLRLGAIQRIRDLKDQTRGRKGLPALARTPRVQRPESSSARGQG 799
            ++V+DDQPP  RR  G  T        AR  R QLPL +AF I I+KSQG  LLR  +DIG+SE++DGQ+FTA SR RT+E +LLE   L+R L IG   SFQ RL AI  +R ++D+TR + GLP + RT R  R    + RG G
Sbjct:    1 MDVMDDQPPTGRR-RGDGTSI------ARCFRMQLPLLLAFGITIYKSQGNTLLRCFLDIGASERSDGQSFTAFSRCRTLENMLLEPFSLERFLKIGDSRSFQSRLNAIDHVRTVEDRTRRQHGLPPIVRTARPPRTRRRAGRGGG 139          
BLAST of mRNA_H-elongata_contig88760.16388.1 vs. uniprot
Match: A0A6S7GL72_PARCT (ATP-dependent DNA helicase PIF1 n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GL72_PARCT)

HSP 1 Score: 126 bits (317), Expect = 4.770e-30
Identity = 80/242 (33.06%), Postives = 121/242 (50.00%), Query Frame = 2
Query:    2 NWERLNLLGSPVARINADHTIRGFTTASADRFRGLQPQFFLAVGARVFANNNIWTSAGLANGVVRVVVHMHWPEGRAPQSLPDVVFVRMEN*SGPQYFEDTSVDIAGQALDLTNVMPIAP--LEVVDDQPPPARRGHGQATRSPGDQRPARYV-RTQLPLAVAFAINIHKSQGQALLRAVVDIGSSEQTDGQTFTALSRLRTMEGLLLEDIDLDRLLHIGQGNSFQLRLGAIQRIRDLKDQT 718
            N+ +L  LG PVA+I A H+  G + A++D   GL    FL+  A V    N+W   GL NG    +  + + E   P +LP  V V   + SGP + +  S             +P+ P   E +DD                      +Y+ R Q+PL + +A+ IHKSQGQ L +AVVD+G  E+  G TF A SR+R++  ++ E +  DRL  IG+  + Q RL A +R++ L ++T
Sbjct:   21 NYLKLLQLGQPVAKIQAKHSGHGASAATSDEAGGLDAVLFLSTKAEVMLTCNVWAEVGLCNGSFGTIEQIWFAENMGPPNLPIAVLVHFHSYSGPAFLDTCS-----------KCIPVPPKVFEWMDD---------------------GKYLSRQQVPLRLRYAMTIHKSQGQTLTKAVVDLGKGEKVAGCTFVATSRVRSIHDIVFESMTFDRLKVIGRSKNMQKRLKAEERLKVLAEKT 230          
BLAST of mRNA_H-elongata_contig88760.16388.1 vs. uniprot
Match: UPI00077A905F (ATP-dependent DNA helicase PIF1-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A905F)

HSP 1 Score: 132 bits (332), Expect = 6.170e-30
Identity = 79/239 (33.05%), Postives = 121/239 (50.63%), Query Frame = 2
Query:    2 NWERLNLLGSPVARINADHTIRGFTTASADRFRGLQPQFFLAVGARVFANNNIWTSAGLANGVVRVVVHMHWPEGRAPQSLPDVVFVRMEN*SGPQYFEDTSVDIAGQALDLTNVMPIAPLEVVDDQPPPARRGHGQATRSPGDQRPARYVRTQLPLAVAFAINIHKSQGQALLRAVVDIGSSEQTDGQTFTALSRLRTMEGLLLEDIDLDRLLHIGQGNSFQLRLGAIQRIRDLKDQT 718
            N E+L+ L  P+A +NA H+      AS D   GL+P  FLA GA V    N+WT+ GL NG    V+   +   + P  LP+ V V+ +N  GP   E            +++ +PI P+ V                          + R QLPL +A+AI IHKSQG  L +A +DIG +E+T G ++ A+SR+RT+   ++E +  +RL  I +  S + R+   +R+ +L +QT
Sbjct:  317 NVEKLSALQHPIACVNAHHSSDLAKKASPDEMAGLEPCIFLAKGAHVMLTLNLWTAVGLCNGATGTVIDFIYANNQQPPDLPEAVIVKFDNYRGPSITES-----------ISSCVPICPITVSSQT------------------LDGLHERQQLPLKLAWAITIHKSQGLTLPKAWIDIGQTERTAGISYVAISRVRTLSSCIIEPMTFERLKSIKKSASLKFRIEEEERLNELAEQT 526          
BLAST of mRNA_H-elongata_contig88760.16388.1 vs. uniprot
Match: A0A814LJU9_9BILA (Hypothetical protein n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A814LJU9_9BILA)

HSP 1 Score: 122 bits (307), Expect = 2.560e-28
Identity = 78/242 (32.23%), Postives = 125/242 (51.65%), Query Frame = 2
Query:    2 NWERLNLLGSPVARINADHTIRGFTTASADRFRGLQPQFFLAVGARVFANNNIWTSAGL---ANGVVRVVVHMHWPEGRAPQSLPDVVFVRMEN*SGPQYFEDTSVDIAGQALDLTNVMPIAPLEVVDDQPPPARRGHGQATRSPGDQRPARYVRTQLPLAVAFAINIHKSQGQALLRAVVDIGSSEQTDGQTFTALSRLRTMEGLLLEDIDLDRLLHIGQGNSFQLRLGAIQRIRDLKDQT 718
            N ++L  L  P+  I A ++ +      +D+  GL    +  + +++   NN+WTS GL   ANG++R ++    P G     LP+ + + +E+  GPQ+F+D         LD  N +PI P+ +       A++  G               RTQLP+ + +A+ IHKSQGQ L +AV+D+G+SE + G TF ALSRL+ +   L+     DRL  I +    Q RL   +R+  LK++T
Sbjct:   50 NNKKLIELQMPIINILAKNSSKKVQRLDSDQAMGLSNSIYTCINSKITLTNNLWTSRGLVNSANGIIRDIIV---PIGYTRGDLPETLIIEVEDYDGPQFFDD---------LDKHNYIPINPISIF------AKQASG--------------TRTQLPIRLGYAMTIHKSQGQTLKKAVIDLGNSEISLGLTFVALSRLKNINDFLIVAFPFDRLTKIRKSTCLQPRLDEEERLIQLKNKT 259          
BLAST of mRNA_H-elongata_contig88760.16388.1 vs. uniprot
Match: UPI00106C62E8 (ATP-dependent DNA helicase PIF6-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C62E8)

HSP 1 Score: 122 bits (306), Expect = 3.880e-28
Identity = 79/239 (33.05%), Postives = 116/239 (48.54%), Query Frame = 2
Query:    2 NWERLNLLGSPVARINADHTIRGFTTASADRFRGLQPQFFLAVGARVFANNNIWTSAGLANGVVRVVVHMHWPEGRAPQSLPDVVFVRMEN*SGPQYFEDTSVDIAGQALDLTNVMPIAPLEVVDDQPPPARRGHGQATRSPGDQRPARYVRTQLPLAVAFAINIHKSQGQALLRAVVDIGSSEQTDGQTFTALSRLRTMEGLLLEDIDLDRLLHIGQGNSFQLRLGAIQRIRDLKDQT 718
            N E+L  L  P+A INA H+       SAD   GL+P  FLA GARV    N+W+S GL NG   +VV + +     P  LP VV +  EN  GP +            +D  + +PI P+ V       +  G  +                QLPL +A+A+ IHKSQG  L +A +DIG +E+T G ++ A+SR++ +   ++E +  +RL  +    + Q RL    R+  L   T
Sbjct:   59 NSEQLTKLEHPIAHINARHSSAFAKKLSADDMSGLEPVAFLAKGARVMLTMNLWSSVGLCNGATGIVVDIVYQNNHQPPDLPIVVIIEFENYRGPAF-----------NVDKPSCVPICPITVSSQ----SETGFHELQ--------------QLPLRLAWALTIHKSQGLTLPKAWIDIGKTERTAGVSYVAISRVKLLSSCVIEPMTYERLTSLKSSANLQYRLEEENRLDRLAQTT 268          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88760.16388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KGT1_9PHAE2.650e-8655.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDL6_9PHAE1.260e-8354.68ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5K558_9PHAE1.130e-8155.43ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5K692_9PHAE1.730e-7152.87ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5KFJ0_9PHAE5.580e-3363.73ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5K5P8_9PHAE2.420e-3050.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6S7GL72_PARCT4.770e-3033.06ATP-dependent DNA helicase PIF1 n=3 Tax=Paramurice... [more]
UPI00077A905F6.170e-3033.05ATP-dependent DNA helicase PIF1-like n=1 Tax=Acrop... [more]
A0A814LJU9_9BILA2.560e-2832.23Hypothetical protein n=1 Tax=Brachionus calyciflor... [more]
UPI00106C62E83.880e-2833.05ATP-dependent DNA helicase PIF6-like n=1 Tax=Dendr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88760contigH-elongata_contig88760:238..1660 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.2
Seed ortholog evalue4e-09
Seed eggNOG ortholog7029.ACYPI32307-PA
KEGG koko:K15255
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGsCOG0507@1,KOG0987@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032
Hectar predicted targeting categoryother localisation
Exons2
Model size1388
Cds size474
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88760.16388.1prot_H-elongata_contig88760.16388.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig88760 584..1092 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931288.5326734-UTR-H-elongata_contig88760:237..5831622931288.5326734-UTR-H-elongata_contig88760:237..583Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig88760 238..583 +
1691679774.873346-UTR-H-elongata_contig88760:237..5831691679774.873346-UTR-H-elongata_contig88760:237..583Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig88760 238..583 +
1622931288.577629-UTR-H-elongata_contig88760:1092..16601622931288.577629-UTR-H-elongata_contig88760:1092..1660Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig88760 1093..1660 +
1691679774.898804-UTR-H-elongata_contig88760:1092..16601691679774.898804-UTR-H-elongata_contig88760:1092..1660Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig88760 1093..1660 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931288.545052-CDS-H-elongata_contig88760:583..10281622931288.545052-CDS-H-elongata_contig88760:583..1028Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88760 584..1028 +
1691679774.8829277-CDS-H-elongata_contig88760:583..10281691679774.8829277-CDS-H-elongata_contig88760:583..1028Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88760 584..1028 +
1622931288.5585961-CDS-H-elongata_contig88760:1063..10921622931288.5585961-CDS-H-elongata_contig88760:1063..1092Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88760 1064..1092 +
1691679774.8907797-CDS-H-elongata_contig88760:1063..10921691679774.8907797-CDS-H-elongata_contig88760:1063..1092Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88760 1064..1092 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig88760.16388.1

>prot_H-elongata_contig88760.16388.1 ID=prot_H-elongata_contig88760.16388.1|Name=mRNA_H-elongata_contig88760.16388.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=158bp
MPIAPLEVVDDQPPPARRGHGQATRSPGDQRPARYVRTQLPLAVAFAINI
HKSQGQALLRAVVDIGSSEQTDGQTFTALSRLRTMEGLLLEDIDLDRLLH
IGQGNSFQLRLGAIQRIRDLKDQTRGRKGLPALARTPRVQRPESSSARGQ
GTRGKRR*
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mRNA from alignment at H-elongata_contig88760:238..1660+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig88760.16388.1 ID=mRNA_H-elongata_contig88760.16388.1|Name=mRNA_H-elongata_contig88760.16388.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1423bp|location=Sequence derived from alignment at H-elongata_contig88760:238..1660+ (Himanthalia elongata Himel1 dioecious)
GAATTGGGAGAGGCTGAACTTGCTCGGGTCGCCCGTTGCGCGCATCAATG CAGACCACACCATCCGCGGCTTCACCACTGCCTCCGCCGACCGCTTCCGA GGTCTCCAGCCGCAATTTTTCCTTGCCGTAGGCGCCCGTGTGTTTGCCAA CAACAACATCTGGACTTCGGCGGGCCTCGCAAACGGAGTAGTTAGGGTGG TCGTTCACATGCATTGGCCGGAGGGGCGAGCCCCCCAGTCGCTTCCCGAC GTTGTCTTCGTTCGGATGGAAAACTAGAGCGGCCCGCAGTACTTCGAAGA CACGTCCGTCGACATCGCGGGCCAGGCGCTTGATCTCACAAACGTCATGC CCATCGCCCCGCTGGAGGTCGTCGACGACCAGCCTCCTCCGGCCCGGCGC GGTCACGGCCAGGCAACGCGGAGCCCGGGGGACCAGCGTCCTGCACGGTA CGTTAGAACACAACTTCCCCTCGCCGTCGCCTTCGCTATCAACATCCACA AGAGTCAGGGGCAGGCGCTCTTGAGGGCTGTGGTAGACATCGGCAGCTCC GAGCAGACGGACGGGCAGACCTTCACCGCCCTCAGCCGTCTCCGGACCAT GGAGGGGTTGCTATTGGAAGACATTGACCTCGACCGTCTTCTACACATCG GCCAAGGCAACTCCTTCCAGCTGCGCTTGGGAGCCATCCAACGCATCAGA GACTTGAAGGACCAGACTCGCGGGCGTAAGGGATTGCCTGCTCTGGCAAG GACACCGCGCGTGCAGCGACCAGAGAGCAGCAGTGCCAGGGGCAGGGGAG GTGGGGCTCGTGGAAGGAGAGGCGAGGGCAGGGGACGCGGGGGAAGCGGA GGTGAGTCTCGTGAAAGGGGTAGGGAAACAAGAGGTGGCAGCCTTTCTGC GCGGAGGAAAGGTCGAGGAAGGCCGTCCAGCAGAGGTGCTCCTCTCGCGA CGACCCGCCCTTGGGCGCAGTATGTGCGCGACTCCATCGAGAGTAGCCAC ACGGATTCGTGGCTCTTGAGCCCCCTGCTGCTCGACGCCATCGGCCATCC CCGACACCAGCACTTCGAACAGCCGCCGGGATGGCAAGGGCTGGTGCAGC GCATGAGGGCCACGCTCGAGGAACACAACAGGATGGACCATGGGGTGGAA GACCCCCGCGGACGGTTGGACGCCTACATCCGCGCCGCCGACCAAGAGGA CATGATGCACTTGAACCTGGCGGTGGAACAAGCTCTGGCGTTGTGGATCA ATGAATTGCGCGACGCCTTCAGCAACAACCTCGTCCTCAATGTCGGCCTG CCGTAGATTCTCGATGTGACACGGAAGGTGGTTTCGCAGTCGATTAGCTG CATGTACTAGTATAGGATTGGTTTTCCAATTAGCACTCAGTGCTGTTGTT GTACATAGGGCTGTACATAGGGT
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Coding sequence (CDS) from alignment at H-elongata_contig88760:238..1660+

>mRNA_H-elongata_contig88760.16388.1 ID=mRNA_H-elongata_contig88760.16388.1|Name=mRNA_H-elongata_contig88760.16388.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=948bp|location=Sequence derived from alignment at H-elongata_contig88760:238..1660+ (Himanthalia elongata Himel1 dioecious)
ATGCCCATCGCCCCGCTGGAGGTCGTCGACGACCAGCCTCCTCCGGCCCG
GCGCGGTCACGGCCAGGCAACGCGGAGCCCGGGGGACCAGCGTCCTGCAC
GGTACGTTAGAACACAACTTCCCCTCGCCGTCGCCTTCGCTATCAACATC
CACAAGAGTCAGGGGCAGGCGCTCTTGAGGGCTGTGGTAGACATCGGCAG
CTCCGAGCAGACGGACGGGCAGACCTTCACCGCCCTCAGCCGTCTCCGGA
CCATGGAGGGGTTGCTATTGGAAGACATTGACCTCGACCGTCTTCTACAC
ATCGGCCAAGGCAACTCCTTCCAGCTGCGCTTGGGAGCCATCCAACGCAT
CAGAGACTTGAAGGACCAGACTCGCGGGCGTAAGGGATTGCCTGCTCTGG
CAAGGACACCGCGCGTGCAGCGACCAGAGAGCAGCAGTGCCAGGGATGCC
CATCGCCCCGCTGGAGGTCGTCGACGACCAGCCTCCTCCGGCCCGGCGCG
GTCACGGCCAGGCAACGCGGAGCCCGGGGGACCAGCGTCCTGCACGGTAC
GTTAGAACACAACTTCCCCTCGCCGTCGCCTTCGCTATCAACATCCACAA
GAGTCAGGGGCAGGCGCTCTTGAGGGCTGTGGTAGACATCGGCAGCTCCG
AGCAGACGGACGGGCAGACCTTCACCGCCCTCAGCCGTCTCCGGACCATG
GAGGGGTTGCTATTGGAAGACATTGACCTCGACCGTCTTCTACACATCGG
CCAAGGCAACTCCTTCCAGCTGCGCTTGGGAGCCATCCAACGCATCAGAG
ACTTGAAGGACCAGACTCGCGGGCGTAAGGGATTGCCTGCTCTGGCAAGG
ACACCGCGCGTGCAGCGACCAGAGAGCAGCAGTGCCAGGGGGCAGGGGAC
GCGGGGGAAGCGGAGGTGAGGCAGGGGACGCGGGGGAAGCGGAGGTGA
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