mRNA_H-elongata_contig88760.16388.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig88760.16388.1 vs. uniprot
Match: A0A6H5KGT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGT1_9PHAE) HSP 1 Score: 281 bits (720), Expect = 2.650e-86 Identity = 149/267 (55.81%), Postives = 181/267 (67.79%), Query Frame = 2
Query: 2 NWERLNLLGSPVARINADHTIRGFTTASADRFRGLQPQFFLAVGARVFANNNIWTSAGLANGVVRVVVHMHWPEGRAPQSLPDVVFVRMEN*SGPQYFEDT-SVDIAGQALDLTNVMPIAPLEVVDDQPPPARRGHGQATRSPGDQRPARYVRTQLPLAVAFAINIHKSQGQALLRAVVDIGSSEQTDGQTFTALSRLRTMEGLLLEDIDLDRLLHIGQGNSFQLRLGAIQRIRDLKDQTRGRKGLPALARTPRVQRPESSSARGQG 799
NW RLN LG+P+ARINA HTI G+ S++RFRGLQ FLA+GARVF NNN W SAGLANG V VVHM W EG+ P LP+VV+VR+EN GPQYFE D A +DLTN+ PIAP++V+DDQPP RR G T AR R QLPL +AF I I+KSQG LLR +DIG+SE++DGQ+FTA SR RT+E +LLE L+R L IG SFQ RL AI +R ++D+TR + GLP + RT R R + RG G
Sbjct: 43 NWRRLNSLGTPIARINATHTIHGYNAVSSERFRGLQSHIFLAIGARVFVNNNNWVSAGLANGAVGEVVHMQWAEGQTPPQLPEVVWVRVENYRGPQYFEQPLRRDWADGEIDLTNLCPIAPMDVMDDQPPTGRR-RGDGTSI------ARCFRMQLPLMLAFGITIYKSQGNTLLRCFLDIGASERSDGQSFTAFSRCRTLENMLLEPFSLERFLKIGDSRSFQSRLNAIDHVRTVEDRTRRQHGLPPIVRTARPPRTRRRAGRGGG 302
BLAST of mRNA_H-elongata_contig88760.16388.1 vs. uniprot
Match: A0A6H5KDL6_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDL6_9PHAE) HSP 1 Score: 276 bits (706), Expect = 1.260e-83 Identity = 146/267 (54.68%), Postives = 180/267 (67.42%), Query Frame = 2
Query: 2 NWERLNLLGSPVARINADHTIRGFTTASADRFRGLQPQFFLAVGARVFANNNIWTSAGLANGVVRVVVHMHWPEGRAPQSLPDVVFVRMEN*SGPQYFEDT-SVDIAGQALDLTNVMPIAPLEVVDDQPPPARRGHGQATRSPGDQRPARYVRTQLPLAVAFAINIHKSQGQALLRAVVDIGSSEQTDGQTFTALSRLRTMEGLLLEDIDLDRLLHIGQGNSFQLRLGAIQRIRDLKDQTRGRKGLPALARTPRVQRPESSSARGQG 799
NW RLN LG+P+ARINA HTI G+ S++RFRGLQ FLA+GARVF +N +W SAGLANG V VVHM W EG+ P LP+VV+VR+EN GPQYFE D A +DLTN+ PIAP++V+DDQPP RR G T AR R QLPL +AF I I+KS G LLR +DIG+SE++DGQ+FTA SR RT+E +LLE L+R L IG SFQ RL AI +R ++D+TR + GLP + RT R R + RG G
Sbjct: 198 NWRRLNSLGTPIARINATHTIHGYNAVSSERFRGLQSHIFLAIGARVFVHNIVWVSAGLANGAVGEVVHMQWAEGQTPPQLPEVVWVRVENYRGPQYFEQPLRRDWADGEIDLTNLCPIAPMDVMDDQPPTGRR-RGDGTSI------ARCFRMQLPLMLAFGITIYKSHGNTLLRCSLDIGASERSDGQSFTAFSRCRTLENMLLEPFSLERFLKIGDSRSFQSRLNAIDHVRTVEDRTRRQHGLPPIVRTARPPRTRRRAGRGGG 457
BLAST of mRNA_H-elongata_contig88760.16388.1 vs. uniprot
Match: A0A6H5K558_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K558_9PHAE) HSP 1 Score: 282 bits (721), Expect = 1.130e-81 Identity = 148/267 (55.43%), Postives = 182/267 (68.16%), Query Frame = 2
Query: 2 NWERLNLLGSPVARINADHTIRGFTTASADRFRGLQPQFFLAVGARVFANNNIWTSAGLANGVVRVVVHMHWPEGRAPQSLPDVVFVRMEN*SGPQYFEDT-SVDIAGQALDLTNVMPIAPLEVVDDQPPPARRGHGQATRSPGDQRPARYVRTQLPLAVAFAINIHKSQGQALLRAVVDIGSSEQTDGQTFTALSRLRTMEGLLLEDIDLDRLLHIGQGNSFQLRLGAIQRIRDLKDQTRGRKGLPALARTPRVQRPESSSARGQG 799
NW RLN LG+P+ARINA HTI G+ S++RFRGLQ FLA+GARVF NNN+W SAGLANG V VVHM W EG+ P LP+VV+VR+EN GPQYFE D A +DLTN+ PIAP++V+DDQPP RR G T AR R QLPL +AF I I+KSQG LLR +DIG+SE++DGQ+FTA SR RT+E +LLE L+R L IG SFQ RL AI +R ++++TR + GLP + RT R R + RG G
Sbjct: 602 NWRRLNSLGTPIARINATHTIHGYNAVSSERFRGLQSHIFLAIGARVFVNNNVWVSAGLANGAVGEVVHMQWAEGQTPPQLPEVVWVRVENYRGPQYFEQPLRRDWADGEIDLTNLCPIAPMDVMDDQPPTGRR-RGDGTSI------ARCFRMQLPLMLAFGITIYKSQGNTLLRCFLDIGASERSDGQSFTAFSRCRTLENMLLEPFSLERFLKIGDSRSFQSRLNAIDHVRTVENRTRRQHGLPPIVRTARPPRTRRRAGRGGG 861
BLAST of mRNA_H-elongata_contig88760.16388.1 vs. uniprot
Match: A0A6H5K692_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K692_9PHAE) HSP 1 Score: 256 bits (654), Expect = 1.730e-71 Identity = 138/261 (52.87%), Postives = 175/261 (67.05%), Query Frame = 2
Query: 2 NWERLNLLGSPVARINADHTIRGFTTASADRFRGLQPQFFLAVGARVFANNNIWTSAGLANGVVRVVVHMHWPEGRAPQSLPDVVFVRMEN*SGPQYF-EDTSVDIAGQALDLTNVMPIAPLEVVDDQPPPA--RRGHGQATRSPGDQRPARYVRTQLPLAVAFAINIHKSQGQALLRAVVDIGSSEQTDGQTFTALSRLRTMEGLLLEDID-LDRLLHIGQGNSFQLRLGAIQRIRDLKDQTRGRKGLPALARTPRVQRP 772
NW RL LG+P+ARI+ADH++ G+ +DRFRGL+ Q FLAVGARVF NNN+WTS GLANG VVHM W G P SLP+VV+VR+EN G QYF E G+ +DL NV+PI+P++ DD PP A RRG G T + G R +RTQLPL +AF I IHKSQG LLR +DIG E++DGQTFTALSR R ++ +LL+ + L+RL IG +F RL A+ R+R+L +QTR + L A+ PR RP
Sbjct: 1412 NWRRLQALGTPIARIDADHSMHGYAHIPSDRFRGLEGQLFLAVGARVFINNNVWTSGGLANGAAGEVVHMQWAPGTQPPSLPEVVWVRVENYRGEQYFSEPLERPWGGRVVDLRNVVPISPIDAPDDHPPAALRRRGGGANTNAQG-----RCIRTQLPLMLAFGITIHKSQGATLLRCFLDIGEQEKSDGQTFTALSRCRALDNMLLQPLFCLERLQRIGTSRTFGARLDALHRVRELANQTRVQNELDAIDIPPRRHRP 1667
BLAST of mRNA_H-elongata_contig88760.16388.1 vs. uniprot
Match: A0A6H5KFJ0_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFJ0_9PHAE) HSP 1 Score: 143 bits (361), Expect = 5.580e-33 Identity = 65/102 (63.73%), Postives = 77/102 (75.49%), Query Frame = 2
Query: 2 NWERLNLLGSPVARINADHTIRGFTTASADRFRGLQPQFFLAVGARVFANNNIWTSAGLANGVVRVVVHMHWPEGRAPQSLPDVVFVRMEN*SGPQYFEDTS 307
NW RLN LG+P+ARINA HTI G+ S++RFRGLQ FLA+GARVF NNN+W SAGLANG V VVHM W EG+ P LP+VV+VR+EN GPQY + S
Sbjct: 1343 NWRRLNSLGTPIARINATHTIHGYNAVSSERFRGLQSHIFLAIGARVFVNNNVWVSAGLANGAVGEVVHMQWAEGQTPPQLPEVVWVRVENYRGPQYSSNHS 1444
BLAST of mRNA_H-elongata_contig88760.16388.1 vs. uniprot
Match: A0A6H5K5P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5P8_9PHAE) HSP 1 Score: 129 bits (325), Expect = 2.420e-30 Identity = 73/146 (50.00%), Postives = 93/146 (63.70%), Query Frame = 2
Query: 362 LEVVDDQPPPARRGHGQATRSPGDQRPARYVRTQLPLAVAFAINIHKSQGQALLRAVVDIGSSEQTDGQTFTALSRLRTMEGLLLEDIDLDRLLHIGQGNSFQLRLGAIQRIRDLKDQTRGRKGLPALARTPRVQRPESSSARGQG 799
++V+DDQPP RR G T AR R QLPL +AF I I+KSQG LLR +DIG+SE++DGQ+FTA SR RT+E +LLE L+R L IG SFQ RL AI +R ++D+TR + GLP + RT R R + RG G
Sbjct: 1 MDVMDDQPPTGRR-RGDGTSI------ARCFRMQLPLLLAFGITIYKSQGNTLLRCFLDIGASERSDGQSFTAFSRCRTLENMLLEPFSLERFLKIGDSRSFQSRLNAIDHVRTVEDRTRRQHGLPPIVRTARPPRTRRRAGRGGG 139
BLAST of mRNA_H-elongata_contig88760.16388.1 vs. uniprot
Match: A0A6S7GL72_PARCT (ATP-dependent DNA helicase PIF1 n=3 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GL72_PARCT) HSP 1 Score: 126 bits (317), Expect = 4.770e-30 Identity = 80/242 (33.06%), Postives = 121/242 (50.00%), Query Frame = 2
Query: 2 NWERLNLLGSPVARINADHTIRGFTTASADRFRGLQPQFFLAVGARVFANNNIWTSAGLANGVVRVVVHMHWPEGRAPQSLPDVVFVRMEN*SGPQYFEDTSVDIAGQALDLTNVMPIAP--LEVVDDQPPPARRGHGQATRSPGDQRPARYV-RTQLPLAVAFAINIHKSQGQALLRAVVDIGSSEQTDGQTFTALSRLRTMEGLLLEDIDLDRLLHIGQGNSFQLRLGAIQRIRDLKDQT 718
N+ +L LG PVA+I A H+ G + A++D GL FL+ A V N+W GL NG + + + E P +LP V V + SGP + + S +P+ P E +DD +Y+ R Q+PL + +A+ IHKSQGQ L +AVVD+G E+ G TF A SR+R++ ++ E + DRL IG+ + Q RL A +R++ L ++T
Sbjct: 21 NYLKLLQLGQPVAKIQAKHSGHGASAATSDEAGGLDAVLFLSTKAEVMLTCNVWAEVGLCNGSFGTIEQIWFAENMGPPNLPIAVLVHFHSYSGPAFLDTCS-----------KCIPVPPKVFEWMDD---------------------GKYLSRQQVPLRLRYAMTIHKSQGQTLTKAVVDLGKGEKVAGCTFVATSRVRSIHDIVFESMTFDRLKVIGRSKNMQKRLKAEERLKVLAEKT 230
BLAST of mRNA_H-elongata_contig88760.16388.1 vs. uniprot
Match: UPI00077A905F (ATP-dependent DNA helicase PIF1-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A905F) HSP 1 Score: 132 bits (332), Expect = 6.170e-30 Identity = 79/239 (33.05%), Postives = 121/239 (50.63%), Query Frame = 2
Query: 2 NWERLNLLGSPVARINADHTIRGFTTASADRFRGLQPQFFLAVGARVFANNNIWTSAGLANGVVRVVVHMHWPEGRAPQSLPDVVFVRMEN*SGPQYFEDTSVDIAGQALDLTNVMPIAPLEVVDDQPPPARRGHGQATRSPGDQRPARYVRTQLPLAVAFAINIHKSQGQALLRAVVDIGSSEQTDGQTFTALSRLRTMEGLLLEDIDLDRLLHIGQGNSFQLRLGAIQRIRDLKDQT 718
N E+L+ L P+A +NA H+ AS D GL+P FLA GA V N+WT+ GL NG V+ + + P LP+ V V+ +N GP E +++ +PI P+ V + R QLPL +A+AI IHKSQG L +A +DIG +E+T G ++ A+SR+RT+ ++E + +RL I + S + R+ +R+ +L +QT
Sbjct: 317 NVEKLSALQHPIACVNAHHSSDLAKKASPDEMAGLEPCIFLAKGAHVMLTLNLWTAVGLCNGATGTVIDFIYANNQQPPDLPEAVIVKFDNYRGPSITES-----------ISSCVPICPITVSSQT------------------LDGLHERQQLPLKLAWAITIHKSQGLTLPKAWIDIGQTERTAGISYVAISRVRTLSSCIIEPMTFERLKSIKKSASLKFRIEEEERLNELAEQT 526
BLAST of mRNA_H-elongata_contig88760.16388.1 vs. uniprot
Match: A0A814LJU9_9BILA (Hypothetical protein n=1 Tax=Brachionus calyciflorus TaxID=104777 RepID=A0A814LJU9_9BILA) HSP 1 Score: 122 bits (307), Expect = 2.560e-28 Identity = 78/242 (32.23%), Postives = 125/242 (51.65%), Query Frame = 2
Query: 2 NWERLNLLGSPVARINADHTIRGFTTASADRFRGLQPQFFLAVGARVFANNNIWTSAGL---ANGVVRVVVHMHWPEGRAPQSLPDVVFVRMEN*SGPQYFEDTSVDIAGQALDLTNVMPIAPLEVVDDQPPPARRGHGQATRSPGDQRPARYVRTQLPLAVAFAINIHKSQGQALLRAVVDIGSSEQTDGQTFTALSRLRTMEGLLLEDIDLDRLLHIGQGNSFQLRLGAIQRIRDLKDQT 718
N ++L L P+ I A ++ + +D+ GL + + +++ NN+WTS GL ANG++R ++ P G LP+ + + +E+ GPQ+F+D LD N +PI P+ + A++ G RTQLP+ + +A+ IHKSQGQ L +AV+D+G+SE + G TF ALSRL+ + L+ DRL I + Q RL +R+ LK++T
Sbjct: 50 NNKKLIELQMPIINILAKNSSKKVQRLDSDQAMGLSNSIYTCINSKITLTNNLWTSRGLVNSANGIIRDIIV---PIGYTRGDLPETLIIEVEDYDGPQFFDD---------LDKHNYIPINPISIF------AKQASG--------------TRTQLPIRLGYAMTIHKSQGQTLKKAVIDLGNSEISLGLTFVALSRLKNINDFLIVAFPFDRLTKIRKSTCLQPRLDEEERLIQLKNKT 259
BLAST of mRNA_H-elongata_contig88760.16388.1 vs. uniprot
Match: UPI00106C62E8 (ATP-dependent DNA helicase PIF6-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106C62E8) HSP 1 Score: 122 bits (306), Expect = 3.880e-28 Identity = 79/239 (33.05%), Postives = 116/239 (48.54%), Query Frame = 2
Query: 2 NWERLNLLGSPVARINADHTIRGFTTASADRFRGLQPQFFLAVGARVFANNNIWTSAGLANGVVRVVVHMHWPEGRAPQSLPDVVFVRMEN*SGPQYFEDTSVDIAGQALDLTNVMPIAPLEVVDDQPPPARRGHGQATRSPGDQRPARYVRTQLPLAVAFAINIHKSQGQALLRAVVDIGSSEQTDGQTFTALSRLRTMEGLLLEDIDLDRLLHIGQGNSFQLRLGAIQRIRDLKDQT 718
N E+L L P+A INA H+ SAD GL+P FLA GARV N+W+S GL NG +VV + + P LP VV + EN GP + +D + +PI P+ V + G + QLPL +A+A+ IHKSQG L +A +DIG +E+T G ++ A+SR++ + ++E + +RL + + Q RL R+ L T
Sbjct: 59 NSEQLTKLEHPIAHINARHSSAFAKKLSADDMSGLEPVAFLAKGARVMLTMNLWSSVGLCNGATGIVVDIVYQNNHQPPDLPIVVIIEFENYRGPAF-----------NVDKPSCVPICPITVSSQ----SETGFHELQ--------------QLPLRLAWALTIHKSQGLTLPKAWIDIGKTERTAGVSYVAISRVKLLSSCVIEPMTYERLTSLKSSANLQYRLEEENRLDRLAQTT 268 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88760.16388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig88760.16388.1 >prot_H-elongata_contig88760.16388.1 ID=prot_H-elongata_contig88760.16388.1|Name=mRNA_H-elongata_contig88760.16388.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=158bp MPIAPLEVVDDQPPPARRGHGQATRSPGDQRPARYVRTQLPLAVAFAINIback to top mRNA from alignment at H-elongata_contig88760:238..1660+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig88760.16388.1 ID=mRNA_H-elongata_contig88760.16388.1|Name=mRNA_H-elongata_contig88760.16388.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1423bp|location=Sequence derived from alignment at H-elongata_contig88760:238..1660+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig88760:238..1660+ >mRNA_H-elongata_contig88760.16388.1 ID=mRNA_H-elongata_contig88760.16388.1|Name=mRNA_H-elongata_contig88760.16388.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=948bp|location=Sequence derived from alignment at H-elongata_contig88760:238..1660+ (Himanthalia elongata Himel1 dioecious)back to top |