mRNA_H-elongata_contig88493.16372.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig88493.16372.1 vs. uniprot
Match: D7FW39_ECTSI (Sec23/sec24 transport protein-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW39_ECTSI) HSP 1 Score: 187 bits (474), Expect = 1.870e-52 Identity = 87/125 (69.60%), Postives = 99/125 (79.20%), Query Frame = 1
Query: 4 GEGGPIRCEKCRAYMNSVVKFSQNGEKWVCDFCKHEGPVPQSYQCPLDSSGLRRDRQQRAELSRGSVDFAVPKVSRNPTSTSTSPAVFSVRPEQQPIFVFCVDASPRALETGFTMACLLAVNAAL 378
GE GP+RCE CRAY+NS K+ QNGEKW+C+FCKHEGPVP +YQCPLD +GLRRDR QRAEL RGSVDF VPK AV+S+RPEQQPIFVFCVD SPRALETGF+ ACL A+ A+L
Sbjct: 393 GEAGPLRCEMCRAYINSFAKYVQNGEKWICNFCKHEGPVPHAYQCPLDGAGLRRDRDQRAELCRGSVDFVVPK------------AVYSLRPEQQPIFVFCVDVSPRALETGFSAACLAAIEASL 505
BLAST of mRNA_H-elongata_contig88493.16372.1 vs. uniprot
Match: A0A6H5JV89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV89_9PHAE) HSP 1 Score: 142 bits (357), Expect = 1.100e-36 Identity = 68/98 (69.39%), Postives = 77/98 (78.57%), Query Frame = 1
Query: 85 WVCDFCKHEGPVPQSYQCPLDSSGLRRDRQQRAELSRGSVDFAVPKVSRNPTSTSTSPAVFSVRPEQQPIFVFCVDASPRALETGFTMACLLAVNAAL 378
W+C+FCKHEGPVP +YQCPLD +GLRRDR QRAEL RGSVDF VPK AV+S+RPEQQPIFVFCVD SPRALETGF+ ACL A+ A+L
Sbjct: 358 WICNFCKHEGPVPHAYQCPLDGAGLRRDRDQRAELCRGSVDFVVPK------------AVYSLRPEQQPIFVFCVDVSPRALETGFSAACLAAIEASL 443
BLAST of mRNA_H-elongata_contig88493.16372.1 vs. uniprot
Match: A0A5D6XUW0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUW0_9STRA) HSP 1 Score: 110 bits (276), Expect = 9.090e-26 Identity = 55/122 (45.08%), Postives = 72/122 (59.02%), Query Frame = 1
Query: 4 GEGGPIRCEKCRAYMNSVVKFSQNGEKWVCDFCKHEGPVPQSYQCPLDSSGLRRDRQQRAELSRGSVDFAVPKVSRNPTSTSTSPAVFSVRPEQQPIFVFCVDASPRALETGFTMACLLAVN 369
G GP+RC +CRAY+NS KF Q G K+VC+ C P+ Y C +D +G RRD Q+RAELSRGSVD+ VP ++VRP Q+PIFVF +D S A +T A L ++
Sbjct: 451 GPNGPLRCTRCRAYVNSFTKFIQGGRKFVCNICTLSNETPRDYYCSVDQNGRRRDVQERAELSRGSVDYVVP-------------VEYTVRPPQEPIFVFVLDVSLFAFQTHLVAAALESIK 559
BLAST of mRNA_H-elongata_contig88493.16372.1 vs. uniprot
Match: A0A8K1CS08_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CS08_PYTOL) HSP 1 Score: 110 bits (276), Expect = 9.100e-26 Identity = 54/122 (44.26%), Postives = 73/122 (59.84%), Query Frame = 1
Query: 4 GEGGPIRCEKCRAYMNSVVKFSQNGEKWVCDFCKHEGPVPQSYQCPLDSSGLRRDRQQRAELSRGSVDFAVPKVSRNPTSTSTSPAVFSVRPEQQPIFVFCVDASPRALETGFTMACLLAVN 369
G GP+RC +CRAY+NS KF Q G+K+VC+ C P+ Y C +D +G RRD Q+RAEL RGSVD+ VP A +++RP Q+PIFVF +D S + +T A L A+
Sbjct: 467 GPNGPLRCTRCRAYVNSYTKFIQGGKKFVCNICALSNETPRDYYCSVDQNGRRRDVQERAELCRGSVDYVVP-------------AAYTLRPPQEPIFVFVLDVSLFSFQTSLAQATLDAIK 575
BLAST of mRNA_H-elongata_contig88493.16372.1 vs. uniprot
Match: K3W624_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W624_GLOUD) HSP 1 Score: 110 bits (274), Expect = 1.640e-25 Identity = 54/122 (44.26%), Postives = 73/122 (59.84%), Query Frame = 1
Query: 4 GEGGPIRCEKCRAYMNSVVKFSQNGEKWVCDFCKHEGPVPQSYQCPLDSSGLRRDRQQRAELSRGSVDFAVPKVSRNPTSTSTSPAVFSVRPEQQPIFVFCVDASPRALETGFTMACLLAVN 369
G GP+RC +CRAY++S KF Q G K+VC+ C P+ Y C +D +G RRD Q+RAELSRGSVD+ VP A ++VRP Q+PIFVF +D S + +T + L A+
Sbjct: 66 GPTGPLRCTRCRAYVSSFTKFIQGGRKFVCNICTLSNETPRDYYCSVDQNGRRRDVQERAELSRGSVDYVVP-------------AAYTVRPPQEPIFVFVLDVSLFSFQTNLATSALNAIK 174
BLAST of mRNA_H-elongata_contig88493.16372.1 vs. uniprot
Match: A0A836CEE0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEE0_9STRA) HSP 1 Score: 110 bits (274), Expect = 1.660e-25 Identity = 58/126 (46.03%), Postives = 73/126 (57.94%), Query Frame = 1
Query: 4 GEGGPIRCEKCRAYMNSVVKFSQNGEKWVCDFCKHE-GPVPQSYQCPLDSSGLRRDRQQRAELSRGSVDFAVPKVSRNPTSTSTSPAVFSVRPEQQPIFVFCVDASPRALETGFTMACLLAVNAAL 378
G GP RC CRAY+N+ +F+ G +W C+ C V +Y+C LD +GLRRDR RAEL RGSVDFAVP A ++VRP QQP++ F +DAS A +GFT A A AL
Sbjct: 460 GAAGPPRCRICRAYINAYARFAAGGAQWACNLCGGALNDVDPAYRCALDGAGLRRDRAARAELCRGSVDFAVP-------------AEYAVRPAQQPVYAFVIDASAAARASGFTAAAAAAAELAL 572
BLAST of mRNA_H-elongata_contig88493.16372.1 vs. uniprot
Match: A0A2D4BTL6_PYTIN (Protein transporter Sec24 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BTL6_PYTIN) HSP 1 Score: 108 bits (269), Expect = 7.920e-25 Identity = 53/122 (43.44%), Postives = 73/122 (59.84%), Query Frame = 1
Query: 4 GEGGPIRCEKCRAYMNSVVKFSQNGEKWVCDFCKHEGPVPQSYQCPLDSSGLRRDRQQRAELSRGSVDFAVPKVSRNPTSTSTSPAVFSVRPEQQPIFVFCVDASPRALETGFTMACLLAVN 369
G GP+RC +CRAY+N+ +F Q G+K+VC+ C P+ Y C +D G RRD Q+RAELSRGSVD+ VP+ ++VRP Q+PIFVF +D S + +T A L A+
Sbjct: 381 GPTGPLRCTRCRAYVNAYTRFIQGGKKFVCNICLLNNETPRDYYCSVDQHGRRRDIQERAELSRGSVDYVVPEA-------------YTVRPPQEPIFVFVLDVSLFSFQTSLAAATLDAIK 489
BLAST of mRNA_H-elongata_contig88493.16372.1 vs. uniprot
Match: A0A3M6VKT2_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VKT2_9STRA) HSP 1 Score: 107 bits (268), Expect = 1.070e-24 Identity = 51/122 (41.80%), Postives = 72/122 (59.02%), Query Frame = 1
Query: 4 GEGGPIRCEKCRAYMNSVVKFSQNGEKWVCDFCKHEGPVPQSYQCPLDSSGLRRDRQQRAELSRGSVDFAVPKVSRNPTSTSTSPAVFSVRPEQQPIFVFCVDASPRALETGFTMACLLAVN 369
G GP+RC +C AY+NS KF Q G K+VC+ C+ P+ Y C +D G RRD Q+RAELSRGSV++ VP A +++RP Q+PI VF +D S + +TG ++ L +
Sbjct: 247 GPSGPLRCTRCAAYVNSFTKFIQGGRKFVCNICQLSNDTPRDYYCSVDQYGKRRDIQERAELSRGSVEYVVP-------------AAYTIRPPQEPILVFILDVSLFSFQTGLAISALQTIQ 355
BLAST of mRNA_H-elongata_contig88493.16372.1 vs. uniprot
Match: A0A6G0RZF7_9STRA (Protein transport protein Sec24-like n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6G0RZF7_9STRA) HSP 1 Score: 107 bits (266), Expect = 1.990e-24 Identity = 51/122 (41.80%), Postives = 71/122 (58.20%), Query Frame = 1
Query: 4 GEGGPIRCEKCRAYMNSVVKFSQNGEKWVCDFCKHEGPVPQSYQCPLDSSGLRRDRQQRAELSRGSVDFAVPKVSRNPTSTSTSPAVFSVRPEQQPIFVFCVDASPRALETGFTMACLLAVN 369
G GP+RC +C AY+NS KF Q G K+VC+ C+ P+ Y C +D G RRD Q+RAELSRGSV++ VP A +++RP Q+PI VF +D S + +TG + L +
Sbjct: 202 GPSGPLRCTRCAAYVNSFTKFIQGGRKFVCNICQLHNETPRDYYCSVDQYGKRRDIQERAELSRGSVEYVVP-------------AAYTIRPPQEPILVFVLDVSLFSFQTGLATSALQTIQ 310
BLAST of mRNA_H-elongata_contig88493.16372.1 vs. uniprot
Match: A0A225WSD1_9STRA (Protein transporter Sec24 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WSD1_9STRA) HSP 1 Score: 107 bits (266), Expect = 2.010e-24 Identity = 51/122 (41.80%), Postives = 71/122 (58.20%), Query Frame = 1
Query: 4 GEGGPIRCEKCRAYMNSVVKFSQNGEKWVCDFCKHEGPVPQSYQCPLDSSGLRRDRQQRAELSRGSVDFAVPKVSRNPTSTSTSPAVFSVRPEQQPIFVFCVDASPRALETGFTMACLLAVN 369
G GP+RC +C AY+NS KF Q G K+VC+ C+ P+ Y C +D G RRD Q+RAELSRGSV++ VP A +++RP Q+PI VF +D S + +TG + L +
Sbjct: 280 GPSGPLRCTRCAAYVNSFTKFIQGGRKFVCNICQLNNETPRDYYCSVDQYGKRRDIQERAELSRGSVEYVVP-------------AAYTIRPPQEPILVFVLDVSLFSFQTGLATSALQTIQ 388 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88493.16372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig88493.16372.1 >prot_H-elongata_contig88493.16372.1 ID=prot_H-elongata_contig88493.16372.1|Name=mRNA_H-elongata_contig88493.16372.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp AGEGGPIRCEKCRAYMNSVVKFSQNGEKWVCDFCKHEGPVPQSYQCPLDSback to top mRNA from alignment at H-elongata_contig88493:498..1875- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig88493.16372.1 ID=mRNA_H-elongata_contig88493.16372.1|Name=mRNA_H-elongata_contig88493.16372.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1378bp|location=Sequence derived from alignment at H-elongata_contig88493:498..1875- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig88493:498..1875- >mRNA_H-elongata_contig88493.16372.1 ID=mRNA_H-elongata_contig88493.16372.1|Name=mRNA_H-elongata_contig88493.16372.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=756bp|location=Sequence derived from alignment at H-elongata_contig88493:498..1875- (Himanthalia elongata Himel1 dioecious)back to top |