mRNA_H-elongata_contig88493.16372.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig88493.16372.1
Unique NamemRNA_H-elongata_contig88493.16372.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig88493.16372.1 vs. uniprot
Match: D7FW39_ECTSI (Sec23/sec24 transport protein-related n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW39_ECTSI)

HSP 1 Score: 187 bits (474), Expect = 1.870e-52
Identity = 87/125 (69.60%), Postives = 99/125 (79.20%), Query Frame = 1
Query:    4 GEGGPIRCEKCRAYMNSVVKFSQNGEKWVCDFCKHEGPVPQSYQCPLDSSGLRRDRQQRAELSRGSVDFAVPKVSRNPTSTSTSPAVFSVRPEQQPIFVFCVDASPRALETGFTMACLLAVNAAL 378
            GE GP+RCE CRAY+NS  K+ QNGEKW+C+FCKHEGPVP +YQCPLD +GLRRDR QRAEL RGSVDF VPK            AV+S+RPEQQPIFVFCVD SPRALETGF+ ACL A+ A+L
Sbjct:  393 GEAGPLRCEMCRAYINSFAKYVQNGEKWICNFCKHEGPVPHAYQCPLDGAGLRRDRDQRAELCRGSVDFVVPK------------AVYSLRPEQQPIFVFCVDVSPRALETGFSAACLAAIEASL 505          
BLAST of mRNA_H-elongata_contig88493.16372.1 vs. uniprot
Match: A0A6H5JV89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV89_9PHAE)

HSP 1 Score: 142 bits (357), Expect = 1.100e-36
Identity = 68/98 (69.39%), Postives = 77/98 (78.57%), Query Frame = 1
Query:   85 WVCDFCKHEGPVPQSYQCPLDSSGLRRDRQQRAELSRGSVDFAVPKVSRNPTSTSTSPAVFSVRPEQQPIFVFCVDASPRALETGFTMACLLAVNAAL 378
            W+C+FCKHEGPVP +YQCPLD +GLRRDR QRAEL RGSVDF VPK            AV+S+RPEQQPIFVFCVD SPRALETGF+ ACL A+ A+L
Sbjct:  358 WICNFCKHEGPVPHAYQCPLDGAGLRRDRDQRAELCRGSVDFVVPK------------AVYSLRPEQQPIFVFCVDVSPRALETGFSAACLAAIEASL 443          
BLAST of mRNA_H-elongata_contig88493.16372.1 vs. uniprot
Match: A0A5D6XUW0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUW0_9STRA)

HSP 1 Score: 110 bits (276), Expect = 9.090e-26
Identity = 55/122 (45.08%), Postives = 72/122 (59.02%), Query Frame = 1
Query:    4 GEGGPIRCEKCRAYMNSVVKFSQNGEKWVCDFCKHEGPVPQSYQCPLDSSGLRRDRQQRAELSRGSVDFAVPKVSRNPTSTSTSPAVFSVRPEQQPIFVFCVDASPRALETGFTMACLLAVN 369
            G  GP+RC +CRAY+NS  KF Q G K+VC+ C      P+ Y C +D +G RRD Q+RAELSRGSVD+ VP               ++VRP Q+PIFVF +D S  A +T    A L ++ 
Sbjct:  451 GPNGPLRCTRCRAYVNSFTKFIQGGRKFVCNICTLSNETPRDYYCSVDQNGRRRDVQERAELSRGSVDYVVP-------------VEYTVRPPQEPIFVFVLDVSLFAFQTHLVAAALESIK 559          
BLAST of mRNA_H-elongata_contig88493.16372.1 vs. uniprot
Match: A0A8K1CS08_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CS08_PYTOL)

HSP 1 Score: 110 bits (276), Expect = 9.100e-26
Identity = 54/122 (44.26%), Postives = 73/122 (59.84%), Query Frame = 1
Query:    4 GEGGPIRCEKCRAYMNSVVKFSQNGEKWVCDFCKHEGPVPQSYQCPLDSSGLRRDRQQRAELSRGSVDFAVPKVSRNPTSTSTSPAVFSVRPEQQPIFVFCVDASPRALETGFTMACLLAVN 369
            G  GP+RC +CRAY+NS  KF Q G+K+VC+ C      P+ Y C +D +G RRD Q+RAEL RGSVD+ VP             A +++RP Q+PIFVF +D S  + +T    A L A+ 
Sbjct:  467 GPNGPLRCTRCRAYVNSYTKFIQGGKKFVCNICALSNETPRDYYCSVDQNGRRRDVQERAELCRGSVDYVVP-------------AAYTLRPPQEPIFVFVLDVSLFSFQTSLAQATLDAIK 575          
BLAST of mRNA_H-elongata_contig88493.16372.1 vs. uniprot
Match: K3W624_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W624_GLOUD)

HSP 1 Score: 110 bits (274), Expect = 1.640e-25
Identity = 54/122 (44.26%), Postives = 73/122 (59.84%), Query Frame = 1
Query:    4 GEGGPIRCEKCRAYMNSVVKFSQNGEKWVCDFCKHEGPVPQSYQCPLDSSGLRRDRQQRAELSRGSVDFAVPKVSRNPTSTSTSPAVFSVRPEQQPIFVFCVDASPRALETGFTMACLLAVN 369
            G  GP+RC +CRAY++S  KF Q G K+VC+ C      P+ Y C +D +G RRD Q+RAELSRGSVD+ VP             A ++VRP Q+PIFVF +D S  + +T    + L A+ 
Sbjct:   66 GPTGPLRCTRCRAYVSSFTKFIQGGRKFVCNICTLSNETPRDYYCSVDQNGRRRDVQERAELSRGSVDYVVP-------------AAYTVRPPQEPIFVFVLDVSLFSFQTNLATSALNAIK 174          
BLAST of mRNA_H-elongata_contig88493.16372.1 vs. uniprot
Match: A0A836CEE0_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEE0_9STRA)

HSP 1 Score: 110 bits (274), Expect = 1.660e-25
Identity = 58/126 (46.03%), Postives = 73/126 (57.94%), Query Frame = 1
Query:    4 GEGGPIRCEKCRAYMNSVVKFSQNGEKWVCDFCKHE-GPVPQSYQCPLDSSGLRRDRQQRAELSRGSVDFAVPKVSRNPTSTSTSPAVFSVRPEQQPIFVFCVDASPRALETGFTMACLLAVNAAL 378
            G  GP RC  CRAY+N+  +F+  G +W C+ C      V  +Y+C LD +GLRRDR  RAEL RGSVDFAVP             A ++VRP QQP++ F +DAS  A  +GFT A   A   AL
Sbjct:  460 GAAGPPRCRICRAYINAYARFAAGGAQWACNLCGGALNDVDPAYRCALDGAGLRRDRAARAELCRGSVDFAVP-------------AEYAVRPAQQPVYAFVIDASAAARASGFTAAAAAAAELAL 572          
BLAST of mRNA_H-elongata_contig88493.16372.1 vs. uniprot
Match: A0A2D4BTL6_PYTIN (Protein transporter Sec24 n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BTL6_PYTIN)

HSP 1 Score: 108 bits (269), Expect = 7.920e-25
Identity = 53/122 (43.44%), Postives = 73/122 (59.84%), Query Frame = 1
Query:    4 GEGGPIRCEKCRAYMNSVVKFSQNGEKWVCDFCKHEGPVPQSYQCPLDSSGLRRDRQQRAELSRGSVDFAVPKVSRNPTSTSTSPAVFSVRPEQQPIFVFCVDASPRALETGFTMACLLAVN 369
            G  GP+RC +CRAY+N+  +F Q G+K+VC+ C      P+ Y C +D  G RRD Q+RAELSRGSVD+ VP+              ++VRP Q+PIFVF +D S  + +T    A L A+ 
Sbjct:  381 GPTGPLRCTRCRAYVNAYTRFIQGGKKFVCNICLLNNETPRDYYCSVDQHGRRRDIQERAELSRGSVDYVVPEA-------------YTVRPPQEPIFVFVLDVSLFSFQTSLAAATLDAIK 489          
BLAST of mRNA_H-elongata_contig88493.16372.1 vs. uniprot
Match: A0A3M6VKT2_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VKT2_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.070e-24
Identity = 51/122 (41.80%), Postives = 72/122 (59.02%), Query Frame = 1
Query:    4 GEGGPIRCEKCRAYMNSVVKFSQNGEKWVCDFCKHEGPVPQSYQCPLDSSGLRRDRQQRAELSRGSVDFAVPKVSRNPTSTSTSPAVFSVRPEQQPIFVFCVDASPRALETGFTMACLLAVN 369
            G  GP+RC +C AY+NS  KF Q G K+VC+ C+     P+ Y C +D  G RRD Q+RAELSRGSV++ VP             A +++RP Q+PI VF +D S  + +TG  ++ L  + 
Sbjct:  247 GPSGPLRCTRCAAYVNSFTKFIQGGRKFVCNICQLSNDTPRDYYCSVDQYGKRRDIQERAELSRGSVEYVVP-------------AAYTIRPPQEPILVFILDVSLFSFQTGLAISALQTIQ 355          
BLAST of mRNA_H-elongata_contig88493.16372.1 vs. uniprot
Match: A0A6G0RZF7_9STRA (Protein transport protein Sec24-like n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6G0RZF7_9STRA)

HSP 1 Score: 107 bits (266), Expect = 1.990e-24
Identity = 51/122 (41.80%), Postives = 71/122 (58.20%), Query Frame = 1
Query:    4 GEGGPIRCEKCRAYMNSVVKFSQNGEKWVCDFCKHEGPVPQSYQCPLDSSGLRRDRQQRAELSRGSVDFAVPKVSRNPTSTSTSPAVFSVRPEQQPIFVFCVDASPRALETGFTMACLLAVN 369
            G  GP+RC +C AY+NS  KF Q G K+VC+ C+     P+ Y C +D  G RRD Q+RAELSRGSV++ VP             A +++RP Q+PI VF +D S  + +TG   + L  + 
Sbjct:  202 GPSGPLRCTRCAAYVNSFTKFIQGGRKFVCNICQLHNETPRDYYCSVDQYGKRRDIQERAELSRGSVEYVVP-------------AAYTIRPPQEPILVFVLDVSLFSFQTGLATSALQTIQ 310          
BLAST of mRNA_H-elongata_contig88493.16372.1 vs. uniprot
Match: A0A225WSD1_9STRA (Protein transporter Sec24 n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WSD1_9STRA)

HSP 1 Score: 107 bits (266), Expect = 2.010e-24
Identity = 51/122 (41.80%), Postives = 71/122 (58.20%), Query Frame = 1
Query:    4 GEGGPIRCEKCRAYMNSVVKFSQNGEKWVCDFCKHEGPVPQSYQCPLDSSGLRRDRQQRAELSRGSVDFAVPKVSRNPTSTSTSPAVFSVRPEQQPIFVFCVDASPRALETGFTMACLLAVN 369
            G  GP+RC +C AY+NS  KF Q G K+VC+ C+     P+ Y C +D  G RRD Q+RAELSRGSV++ VP             A +++RP Q+PI VF +D S  + +TG   + L  + 
Sbjct:  280 GPSGPLRCTRCAAYVNSFTKFIQGGRKFVCNICQLNNETPRDYYCSVDQYGKRRDIQERAELSRGSVEYVVP-------------AAYTIRPPQEPILVFVLDVSLFSFQTGLATSALQTIQ 388          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88493.16372.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FW39_ECTSI1.870e-5269.60Sec23/sec24 transport protein-related n=1 Tax=Ecto... [more]
A0A6H5JV89_9PHAE1.100e-3669.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5D6XUW0_9STRA9.090e-2645.08Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A8K1CS08_PYTOL9.100e-2644.26Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3W624_GLOUD1.640e-2544.26Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A836CEE0_9STRA1.660e-2546.03Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A2D4BTL6_PYTIN7.920e-2543.44Protein transporter Sec24 n=1 Tax=Pythium insidios... [more]
A0A3M6VKT2_9STRA1.070e-2441.80Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A6G0RZF7_9STRA1.990e-2441.80Protein transport protein Sec24-like n=5 Tax=Phyto... [more]
A0A225WSD1_9STRA2.010e-2441.80Protein transporter Sec24 n=1 Tax=Phytophthora meg... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88493contigH-elongata_contig88493:498..1875 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score189.1
Seed ortholog evalue1.2e-45
Seed eggNOG ortholog2880.D7FW39
KEGG koko:K14007
KEGG Pathwayko04141,map04141
KEGG ModuleM00404
EggNOG free text desc.ER to Golgi vesicle-mediated transport
EggNOG OGsCOG5028@1,KOG1984@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131
Hectar predicted targeting categoryother localisation
Exons3
Model size378
Cds size378
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88493.16372.1prot_H-elongata_contig88493.16372.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig88493 498..1875 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931286.5898163-CDS-H-elongata_contig88493:497..6171622931286.5898163-CDS-H-elongata_contig88493:497..617Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88493 498..617 -
1691679774.1018498-CDS-H-elongata_contig88493:497..6171691679774.1018498-CDS-H-elongata_contig88493:497..617Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88493 498..617 -
1622931286.6022177-CDS-H-elongata_contig88493:974..11481622931286.6022177-CDS-H-elongata_contig88493:974..1148Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88493 975..1148 -
1691679774.1140058-CDS-H-elongata_contig88493:974..11481691679774.1140058-CDS-H-elongata_contig88493:974..1148Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88493 975..1148 -
1622931286.6159172-CDS-H-elongata_contig88493:1791..18751622931286.6159172-CDS-H-elongata_contig88493:1791..1875Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88493 1792..1875 -
1691679774.1328223-CDS-H-elongata_contig88493:1791..18751691679774.1328223-CDS-H-elongata_contig88493:1791..1875Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88493 1792..1875 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig88493.16372.1

>prot_H-elongata_contig88493.16372.1 ID=prot_H-elongata_contig88493.16372.1|Name=mRNA_H-elongata_contig88493.16372.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=126bp
AGEGGPIRCEKCRAYMNSVVKFSQNGEKWVCDFCKHEGPVPQSYQCPLDS
SGLRRDRQQRAELSRGSVDFAVPKVSRNPTSTSTSPAVFSVRPEQQPIFV
FCVDASPRALETGFTMACLLAVNAAL
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mRNA from alignment at H-elongata_contig88493:498..1875-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig88493.16372.1 ID=mRNA_H-elongata_contig88493.16372.1|Name=mRNA_H-elongata_contig88493.16372.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1378bp|location=Sequence derived from alignment at H-elongata_contig88493:498..1875- (Himanthalia elongata Himel1 dioecious)
GCAGGAGAAGGCGGCCCCATTCGATGCGAGAAATGTCGCGCGTACATGAA CAGCGTCGTCAAGTTTTCTCAAAATGGCGAAAAGGTGCGTCGAGGCGGGA TGCGGGATGCAACAAACAGATGAAGATGAATATGTGTAGCACGGCATCGG GTCCTCCACGGTATCGGGTAGTGTCTGTCTCTCTCTGTGAATAGTGTCTG TGTATGAGTGTGGCCATCACATATAGCAGAGTATGGGTCATCCAGATATG ATCGCCAATCCTGCTCATGGTTAGCTGAACAGGGAAAATGGGATTTGGGT TATCGAGACGGGTTCGGCTGTCCCGTCACGCGTTAGCCCGCTCATCTTCT TCGCCCAGGATGAATCATGTTTTTTGCGTATACGCACGGTGGCTCCGTGC ATTCCTCATGACTTCTTGTAGTTTACCACGAGTCCTCCGTATCGTACTCG TACTGCTGCGTAGAGGAGATATCCAGCATCTTTTCTGCGCTTCACCAAAT CAAGCGCCGTCGCTGTCCAAAGCAAGCTGGTACAGAGACAGGGAAGTACG AGCATAGCGTTGGAGAAGATTAGCCGGAGATGCTTGCGACGCGACTGAGC TCGAGTTTTCAATTCGGTTCCTGACCTGATCGTCGAGAGTTATTCACACC AGACATATATTTATAGGACCCTCGCTCTTTTGTTGCCTCGCTTGACTGCT ATGTCTCGGGTCGGCATGGTCCACCAGTGGGTGTGTGACTTCTGCAAGCA CGAGGGACCGGTGCCACAGAGCTACCAGTGCCCGCTCGATAGCTCGGGCT TGAGGAGGGATAGACAGCAGAGGGCGGAGCTGAGCCGGGGTAGCGTCGAC TTCGCTGTCCCCAAGGTATCGCGAAATCCTACATCAACGTCAACATCCCC CGTCGCTGTTCCAATGATTGATGTGGATAAGTGTTGGTTAAAAGTCGTCA TCGTCCAACGCGCCATTAACACATCACACTTGCTTTGCTTTACATGTTTT TGTTAGCGTATCTGTGTCTTTAGTTAGTTGCTGTTTTTTAGCATGTCCTC CTTCCTGCAAGACAAAAACAAAAATGATTCGTAACTAAGGCTCTGAATGC TGGGATGGCGCCGCCGACGTGTTGGTCTTCAACCTTTTGATCTAAGGATA TATTGCTCCTCCACACACAAATTCCTTGTATAAATCGATCCTGCCGCTTC CGTCTCGTCTAACGGTGCCCCTTTTGTACCGTTGGGGTCCCTCTTGTACC GTTGACAGGCTGTGTTCTCTGTGCGTCCAGAGCAGCAGCCTATCTTCGTG TTCTGCGTGGACGCTTCGCCGAGGGCACTGGAGACGGGATTTACCATGGC GTGCCTCTTGGCGGTGAACGCGGCCTTG
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Coding sequence (CDS) from alignment at H-elongata_contig88493:498..1875-

>mRNA_H-elongata_contig88493.16372.1 ID=mRNA_H-elongata_contig88493.16372.1|Name=mRNA_H-elongata_contig88493.16372.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=756bp|location=Sequence derived from alignment at H-elongata_contig88493:498..1875- (Himanthalia elongata Himel1 dioecious)
GCAGGAGAAGGCGGCCCCATTCGATGCGAGAAATGTCGCGCGTACATGAA
CAGCGTCGTCAAGTTTTCTCAAAATGGCGAAAAGGCAGGAGAAGGCGGCC
CCATTCGATGCGAGAAATGTCGCGCGTACATGAACAGCGTCGTCAAGTTT
TCTCAAAATGGCGAAAAGTGGGTGTGTGACTTCTGCAAGCACGAGGGACC
GGTGCCACAGAGCTACCAGTGCCCGCTCGATAGCTCGGGCTTGAGGAGGG
ATAGACAGCAGAGGGCGGAGCTGAGCCGGGGTAGCGTCGACTTCGCTGTC
CCCAAGGTATCGCGAAATCCTACATCAACGTCAACATCCCCCTGGGTGTG
TGACTTCTGCAAGCACGAGGGACCGGTGCCACAGAGCTACCAGTGCCCGC
TCGATAGCTCGGGCTTGAGGAGGGATAGACAGCAGAGGGCGGAGCTGAGC
CGGGGTAGCGTCGACTTCGCTGTCCCCAAGGTATCGCGAAATCCTACATC
AACGTCAACATCCCCCGCTGTGTTCTCTGTGCGTCCAGAGCAGCAGCCTA
TCTTCGTGTTCTGCGTGGACGCTTCGCCGAGGGCACTGGAGACGGGATTT
ACCATGGCGTGCCTCTTGGCGGTGAACGCGGCCTTGGCTGTGTTCTCTGT
GCGTCCAGAGCAGCAGCCTATCTTCGTGTTCTGCGTGGACGCTTCGCCGA
GGGCACTGGAGACGGGATTTACCATGGCGTGCCTCTTGGCGGTGAACGCG
GCCTTG
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