mRNA_H-elongata_contig88171.16344.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig88171.16344.1 vs. uniprot
Match: D8LDN2_ECTSI (General transcription and DNA repair factor IIH helicase subunit XPD n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDN2_ECTSI) HSP 1 Score: 400 bits (1027), Expect = 1.250e-131 Identity = 221/264 (83.71%), Postives = 228/264 (86.36%), Query Frame = 1
Query: 1 WCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLEAASRCLGKISSKVADMKRTDQARLNEEYQRLVSGLADSGLGRSSGGVGGTSTAAGVSARAGGGPGT------------------AGAAADAIPANPALPADILQEAVPGNIRRAEHFVSFLRKIVEHFKLRVRVQSVESETPLAFVHRLQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLV 738
WCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSL+AASRCLGKISSKVA+MKRTDQARLN EYQRLVSGLADSGLGR+SGGV G+ AAG AAADAIPANPALPADILQEAVPGNIRRAEHFVSF+RK+VEHFK RVRVQSVESETPLAFVHR+QQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLV
Sbjct: 189 WCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLDAASRCLGKISSKVAEMKRTDQARLNAEYQRLVSGLADSGLGRASGGVAGS--AAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVAAAADAIPANPALPADILQEAVPGNIRRAEHFVSFMRKVVEHFKTRVRVQSVESETPLAFVHRMQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLV 450
BLAST of mRNA_H-elongata_contig88171.16344.1 vs. uniprot
Match: A0A836CJZ4_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJZ4_9STRA) HSP 1 Score: 342 bits (876), Expect = 1.520e-108 Identity = 179/246 (72.76%), Postives = 201/246 (81.71%), Query Frame = 1
Query: 1 WCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLEAASRCLGKISSKVADMKRTDQARLNEEYQRLVSGLADSGLGRSSGGVGGTSTAAGVSARAGGGPGTAGAAADAIPANPALPADILQEAVPGNIRRAEHFVSFLRKIVEHFKLRVRVQSVESETPLAFVHRLQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLV 738
WCPYFLARH+INHAN+LVYNYQYMLDPKVAG+VSRELEAESVVVFDEAHNIDNVCTEALSV L++ +LEAASRCLG++SSKV DMK+ DQ RLNEEYQRLV+GLAD+ G GV G A + + ANPALPAD+L EAVPGNIRRAEHFVSFLRK++EH K+R+R +VESETPLAF+HRLQQ T +ERKPL+F YSRLNSLLRTLEVT LDDFRPL VADFATLV
Sbjct: 227 WCPYFLARHVINHANILVYNYQYMLDPKVAGLVSRELEAESVVVFDEAHNIDNVCTEALSVQLNRHNLEAASRCLGRVSSKVTDMKQHDQRRLNEEYQRLVNGLADNAAGPLPAGV-------------------QGIADNNMLANPALPADVLAEAVPGNIRRAEHFVSFLRKLIEHLKVRIRATNVESETPLAFLHRLQQNTTIERKPLRFTYSRLNSLLRTLEVTNLDDFRPLSAVADFATLV 453
BLAST of mRNA_H-elongata_contig88171.16344.1 vs. uniprot
Match: K8YZX4_NANGC (General transcription and DNA repair factor IIH helicase subunit XPD (Fragment) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YZX4_NANGC) HSP 1 Score: 307 bits (787), Expect = 4.520e-95 Identity = 163/248 (65.73%), Postives = 198/248 (79.84%), Query Frame = 1
Query: 1 WCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLEAASRCLGKISSKVADMKRTDQARLNEEYQRLVSGLADSGLGRSSGGVGGTSTAAGVSARAGGGPGTAGAAADAIPANPA--LPADILQEAVPGNIRRAEHFVSFLRKIVEHFKLRVRVQSVESETPLAFVHRLQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLV 738
WCPYFLARHIINHAN+L+YNYQY+LDPKVAG+VS+ELEAES+VVFDEAHNIDNVC EALSV+LD+RSL+ A+RCLGK+S++V+ MK+ D +LNEEYQRLV GLA+SG +GG + G G+A + ADA+ ANP LP + QEAVPGNIRRAEHF++F++K+VEH K +RV S + ++PLAF+H LQ TALE KPL+F YSRLNSLLRTLEVT LD+F PL DVADFATLV
Sbjct: 190 WCPYFLARHIINHANILIYNYQYVLDPKVAGLVSKELEAESIVVFDEAHNIDNVCIEALSVELDERSLDKATRCLGKLSTEVSKMKQKDANKLNEEYQRLVRGLAESGA------LGGAA-----------GAGSAASPADAMLANPVPRLPDALAQEAVPGNIRRAEHFLTFMKKVVEHLKTLLRVDSTQKQSPLAFLHYLQTKTALEVKPLRFTYSRLNSLLRTLEVTHLDEFNPLQDVADFATLV 420
BLAST of mRNA_H-elongata_contig88171.16344.1 vs. uniprot
Match: A0A7S2GG08_9STRA (DNA helicase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GG08_9STRA) HSP 1 Score: 279 bits (714), Expect = 1.570e-87 Identity = 156/250 (62.40%), Postives = 177/250 (70.80%), Query Frame = 1
Query: 1 WCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLEAASRCLGKISSKVADMKRTDQARLNEEYQRLVSGLADSGLGRSSGGVGGTSTAAGVSARAGGGPGTAGAAADAIPANPALPADILQEAVPGNIRRAEHFVSFLRKIVEHFKLRV----RVQSVESETPLAFVHRLQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLV 738
WCPYFLARH+INHA VLVYNYQYMLDPKVAGMVSRELE+ESVV+FDEAHNIDNVC EALSV LD+RS+ AA + L IS+KV ++K D +RL +EY+RLV+GL D AG D I ANP+LPAD+L EAVPGNIRRAEHFVSFLR I+ H + R+ +VE+ETPLAFVHRL T E KPLKFAYSRLNSLLRTLEVT LD + PL DV D TLV
Sbjct: 233 WCPYFLARHVINHAKVLVYNYQYMLDPKVAGMVSRELESESVVIFDEAHNIDNVCIEALSVALDRRSITAAHQSLDAISTKVREVKTRDASRLQDEYRRLVAGLNDG----------------------------AGGQTDTILANPSLPADVLSEAVPGNIRRAEHFVSFLRTILTHLEQRMISTAENDTVETETPLAFVHRLCGDTHHEIKPLKFAYSRLNSLLRTLEVTSLDQYNPLQDVTDLITLV 454
BLAST of mRNA_H-elongata_contig88171.16344.1 vs. uniprot
Match: A0A7S2N290_9STRA (DNA helicase (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N290_9STRA) HSP 1 Score: 268 bits (684), Expect = 2.140e-87 Identity = 146/251 (58.17%), Postives = 181/251 (72.11%), Query Frame = 1
Query: 1 WCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLEAASRCLGKISSKVADMKRTDQARLNEEYQRLVSGLADSGLGRSSGGVGGTSTAAGVSARAGGGPGTAGAAADAIPANPALPADILQEAVPGNIRRAEHFVSFLRKIVEHFKLRVRVQS-----VESETPLAFVHRLQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLV 738
WCPY+L R INHAN+LV+NYQYMLDPKVA MVS+ELEAES++VFDEAHNID+VC EALSVD+++R LE A+R LG++SS+V+ +K +D ARL EYQ LVSGL D GL T A +D + L D+L +AVPGNIRRAEHF++F++K+VEH K R+R + V+SETPLAF+HRL T+LE KPLKFAYSRL+SLLRTL+V+ LDDF L DVADFATL+
Sbjct: 1 WCPYYLTRQAINHANILVFNYQYMLDPKVAKMVSKELEAESIIVFDEAHNIDSVCIEALSVDINERGLEQATRSLGRLSSEVSRIKASDNARLQAEYQNLVSGLIDQGL---------LDTPA----------------SDIGLTSNVLSPDVLNQAVPGNIRRAEHFIAFMKKLVEHLKARLRSVAGPNGGVQSETPLAFLHRLMGGTSLEAKPLKFAYSRLSSLLRTLQVSNLDDFNALTDVADFATLL 226
BLAST of mRNA_H-elongata_contig88171.16344.1 vs. uniprot
Match: A0A7S2D9H7_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D9H7_9STRA) HSP 1 Score: 279 bits (714), Expect = 9.500e-85 Identity = 156/250 (62.40%), Postives = 177/250 (70.80%), Query Frame = 1
Query: 1 WCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLEAASRCLGKISSKVADMKRTDQARLNEEYQRLVSGLADSGLGRSSGGVGGTSTAAGVSARAGGGPGTAGAAADAIPANPALPADILQEAVPGNIRRAEHFVSFLRKIVEHFKLRV----RVQSVESETPLAFVHRLQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLV 738
WCPYFLARH+INHA VLVYNYQYMLDPKVAGMVSRELE+ESVV+FDEAHNIDNVC EALSV LD+RS+ AA + L IS+KV ++K D +RL +EY+RLV+GL D AG D I ANP+LPAD+L EAVPGNIRRAEHFVSFLR I+ H + R+ +VE+ETPLAFVHRL T E KPLKFAYSRLNSLLRTLEVT LD + PL DV D TLV
Sbjct: 233 WCPYFLARHVINHAKVLVYNYQYMLDPKVAGMVSRELESESVVIFDEAHNIDNVCIEALSVALDRRSITAAHQSLDAISTKVREVKTRDASRLQDEYRRLVAGLNDG----------------------------AGGQTDTILANPSLPADVLSEAVPGNIRRAEHFVSFLRTILTHLEQRMISTAENDTVETETPLAFVHRLCGDTHHEIKPLKFAYSRLNSLLRTLEVTSLDQYNPLQDVTDLITLV 454
BLAST of mRNA_H-elongata_contig88171.16344.1 vs. uniprot
Match: A0A7R9U4D1_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4D1_9STRA) HSP 1 Score: 280 bits (716), Expect = 1.030e-84 Identity = 147/246 (59.76%), Postives = 182/246 (73.98%), Query Frame = 1
Query: 1 WCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLEAASRCLGKISSKVADMKRTDQARLNEEYQRLVSGLADSGLGRSSGGVGGTSTAAGVSARAGGGPGTAGAAADAIPANPALPADILQEAVPGNIRRAEHFVSFLRKIVEHFKLRVRVQSVESETPLAFVHRLQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLV 738
WCPYFLARH++ HANVL+YNYQYMLDPKVAG+VS ELE +SVVVFDEAHNIDNVC EA+SV + + L+A++R LG ++SKV +MK +D RLN EYQRLVSGLA SG PG+ A D+I +NP+LPADIL E+VPGNIR+AEHF++F+RKIV H K ++R + ETP AF+H+L ++T LE KP+KF YSRLNSLLRTLEVT LDD L ++ADFATL+
Sbjct: 233 WCPYFLARHVLKHANVLIYNYQYMLDPKVAGLVSSELEEDSVVVFDEAHNIDNVCIEAMSVQISRPILDASTRSLGALASKVEEMKASDVERLNAEYQRLVSGLAMSGPA----------------------PGSYTVATDSILSNPSLPADILAESVPGNIRKAEHFLTFMRKIVRHLKDQLRNPEAKWETPQAFLHQLHEMTGLEAKPMKFTYSRLNSLLRTLEVTSLDDHSDLAEIADFATLL 456
BLAST of mRNA_H-elongata_contig88171.16344.1 vs. uniprot
Match: A0A8K1FGF4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FGF4_PYTOL) HSP 1 Score: 270 bits (691), Expect = 3.490e-82 Identity = 141/246 (57.32%), Postives = 185/246 (75.20%), Query Frame = 1
Query: 1 WCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLEAASRCLGKISSKVADMKRTDQARLNEEYQRLVSGLADSGLGRSSGGVGGTSTAAGVSARAGGGPGTAGAAADAIPANPALPADILQEAVPGNIRRAEHFVSFLRKIVEHFKLRVRVQSVESETPLAFVHRLQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLV 738
WCPYFL R+++ +A+V+VYNYQYMLDPKV+ MVSR E ES+VVFDEAHNIDNVC EALSV+LD+RSL+ ASR L IS++V MK+ D+ARL+ EY+RLV GL RSS V + + +A + D + ANP LP D+L EA+PGNIRRAEHF++F+R+++E+ + R+RV++VESETP AF+H L Q A+E KP+KF Y+RLNSL+RTLE+T L+++ L DVADFATLV
Sbjct: 191 WCPYFLTRYVVTYADVIVYNYQYMLDPKVSAMVSRAFEKESIVVFDEAHNIDNVCIEALSVELDRRSLDRASRNLTTISAQVNKMKQADKARLDAEYRRLVEGL------RSSSAVVAPTYVNPANQQA------IDTSNDILTANPVLPDDVLDEAIPGNIRRAEHFIAFMRRLIEYLRTRIRVRNVESETPQAFLHHLNQAIAMETKPMKFCYTRLNSLMRTLEITNLEEYNSLTDVADFATLV 424
BLAST of mRNA_H-elongata_contig88171.16344.1 vs. uniprot
Match: A0A2P4X6T2_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X6T2_9STRA) HSP 1 Score: 265 bits (676), Expect = 1.950e-81 Identity = 143/249 (57.43%), Postives = 180/249 (72.29%), Query Frame = 1
Query: 1 WCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLEAASRCLGKISSKVADMKRTDQARLNEEYQRLVSGLADSGLGRSSGGVGGTSTAAGVSARAGGGPGTAGA---AADAIPANPALPADILQEAVPGNIRRAEHFVSFLRKIVEHFKLRVRVQSVESETPLAFVHRLQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLV 738
WCPYFL R+++ A+V+VYNYQYMLDPKV+ +VSR E ES+VVFDEAHNIDNVC EALSVDLD+RSL+ ASR L +SS+V +K+ D++RL+ EY+RLV GL S V A P T A A D + ANP LP D+L EA+PGNIRRAEHFV+F+R+++E+ + R+RV+ VESETP AF+H L Q +E KP+KF Y+RLNSLLRTLEVT L+++ L DVADFATLV
Sbjct: 195 WCPYFLTRYVVTFADVVVYNYQYMLDPKVSQLVSRSFEKESIVVFDEAHNIDNVCIEALSVDLDRRSLDRASRNLTTLSSQVNKLKQADKSRLDAEYRRLVEGLRSSNA---------------VVAPTYTDPTTNNAIDTANDILIANPVLPDDVLDEAIPGNIRRAEHFVAFMRRLIEYLRQRIRVRQVESETPQAFLHHLHQAINMEIKPMKFCYTRLNSLLRTLEVTNLEEYNSLTDVADFATLV 428
BLAST of mRNA_H-elongata_contig88171.16344.1 vs. uniprot
Match: A0A7S2XLG2_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XLG2_9STRA) HSP 1 Score: 269 bits (688), Expect = 3.750e-81 Identity = 146/251 (58.17%), Postives = 182/251 (72.51%), Query Frame = 1
Query: 1 WCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLEAASRCLGKISSKVADMKRTDQARLNEEYQRLVSGLADSGLGRSSGGVGGTSTAAGVSARAGGGPGTAGAAADAIPANPALPADILQEAVPGNIRRAEHFVSFLRKIVEHFKLRVRVQS-----VESETPLAFVHRLQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLV 738
WCPY+L R INHAN+LV+NYQYMLDPKVA MVS+ELE+ES++VFDEAHNID+VC EALSV +++R LE A+R LG++SS+V+ +K +D RL EYQ LV+GL D GL + + +G+ A+ AL +D+L EAVPGNIRRAEHFV+F++KIVEH K R+R S V+SETPLAF+HR+ T+LE KPLKFAYSRL SLLRTLEV+ LDDF L DVADFATL+
Sbjct: 279 WCPYYLTRQAINHANILVFNYQYMLDPKVAKMVSKELESESIIVFDEAHNIDSVCIEALSVTINERGLEQATRSLGRLSSEVSRIKSSDNQRLQNEYQNLVNGLIDQGL------LNAPANESGL-------------------ASNALSSDVLNEAVPGNIRRAEHFVAFMKKIVEHLKARLRAVSGPNGGVQSETPLAFLHRMMNGTSLEAKPLKFAYSRLASLLRTLEVSNLDDFNALTDVADFATLL 504 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88171.16344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig88171.16344.1 >prot_H-elongata_contig88171.16344.1 ID=prot_H-elongata_contig88171.16344.1|Name=mRNA_H-elongata_contig88171.16344.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=246bp WCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNback to top mRNA from alignment at H-elongata_contig88171:176..2529- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig88171.16344.1 ID=mRNA_H-elongata_contig88171.16344.1|Name=mRNA_H-elongata_contig88171.16344.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2354bp|location=Sequence derived from alignment at H-elongata_contig88171:176..2529- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig88171:176..2529- >mRNA_H-elongata_contig88171.16344.1 ID=mRNA_H-elongata_contig88171.16344.1|Name=mRNA_H-elongata_contig88171.16344.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1476bp|location=Sequence derived from alignment at H-elongata_contig88171:176..2529- (Himanthalia elongata Himel1 dioecious)back to top |