mRNA_H-elongata_contig88171.16344.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig88171.16344.1
Unique NamemRNA_H-elongata_contig88171.16344.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig88171.16344.1 vs. uniprot
Match: D8LDN2_ECTSI (General transcription and DNA repair factor IIH helicase subunit XPD n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDN2_ECTSI)

HSP 1 Score: 400 bits (1027), Expect = 1.250e-131
Identity = 221/264 (83.71%), Postives = 228/264 (86.36%), Query Frame = 1
Query:    1 WCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLEAASRCLGKISSKVADMKRTDQARLNEEYQRLVSGLADSGLGRSSGGVGGTSTAAGVSARAGGGPGT------------------AGAAADAIPANPALPADILQEAVPGNIRRAEHFVSFLRKIVEHFKLRVRVQSVESETPLAFVHRLQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLV 738
            WCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSL+AASRCLGKISSKVA+MKRTDQARLN EYQRLVSGLADSGLGR+SGGV G+  AAG                               AAADAIPANPALPADILQEAVPGNIRRAEHFVSF+RK+VEHFK RVRVQSVESETPLAFVHR+QQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLV
Sbjct:  189 WCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLDAASRCLGKISSKVAEMKRTDQARLNAEYQRLVSGLADSGLGRASGGVAGS--AAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVAAAADAIPANPALPADILQEAVPGNIRRAEHFVSFMRKVVEHFKTRVRVQSVESETPLAFVHRMQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLV 450          
BLAST of mRNA_H-elongata_contig88171.16344.1 vs. uniprot
Match: A0A836CJZ4_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJZ4_9STRA)

HSP 1 Score: 342 bits (876), Expect = 1.520e-108
Identity = 179/246 (72.76%), Postives = 201/246 (81.71%), Query Frame = 1
Query:    1 WCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLEAASRCLGKISSKVADMKRTDQARLNEEYQRLVSGLADSGLGRSSGGVGGTSTAAGVSARAGGGPGTAGAAADAIPANPALPADILQEAVPGNIRRAEHFVSFLRKIVEHFKLRVRVQSVESETPLAFVHRLQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLV 738
            WCPYFLARH+INHAN+LVYNYQYMLDPKVAG+VSRELEAESVVVFDEAHNIDNVCTEALSV L++ +LEAASRCLG++SSKV DMK+ DQ RLNEEYQRLV+GLAD+  G    GV                    G A + + ANPALPAD+L EAVPGNIRRAEHFVSFLRK++EH K+R+R  +VESETPLAF+HRLQQ T +ERKPL+F YSRLNSLLRTLEVT LDDFRPL  VADFATLV
Sbjct:  227 WCPYFLARHVINHANILVYNYQYMLDPKVAGLVSRELEAESVVVFDEAHNIDNVCTEALSVQLNRHNLEAASRCLGRVSSKVTDMKQHDQRRLNEEYQRLVNGLADNAAGPLPAGV-------------------QGIADNNMLANPALPADVLAEAVPGNIRRAEHFVSFLRKLIEHLKVRIRATNVESETPLAFLHRLQQNTTIERKPLRFTYSRLNSLLRTLEVTNLDDFRPLSAVADFATLV 453          
BLAST of mRNA_H-elongata_contig88171.16344.1 vs. uniprot
Match: K8YZX4_NANGC (General transcription and DNA repair factor IIH helicase subunit XPD (Fragment) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YZX4_NANGC)

HSP 1 Score: 307 bits (787), Expect = 4.520e-95
Identity = 163/248 (65.73%), Postives = 198/248 (79.84%), Query Frame = 1
Query:    1 WCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLEAASRCLGKISSKVADMKRTDQARLNEEYQRLVSGLADSGLGRSSGGVGGTSTAAGVSARAGGGPGTAGAAADAIPANPA--LPADILQEAVPGNIRRAEHFVSFLRKIVEHFKLRVRVQSVESETPLAFVHRLQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLV 738
            WCPYFLARHIINHAN+L+YNYQY+LDPKVAG+VS+ELEAES+VVFDEAHNIDNVC EALSV+LD+RSL+ A+RCLGK+S++V+ MK+ D  +LNEEYQRLV GLA+SG       +GG +           G G+A + ADA+ ANP   LP  + QEAVPGNIRRAEHF++F++K+VEH K  +RV S + ++PLAF+H LQ  TALE KPL+F YSRLNSLLRTLEVT LD+F PL DVADFATLV
Sbjct:  190 WCPYFLARHIINHANILIYNYQYVLDPKVAGLVSKELEAESIVVFDEAHNIDNVCIEALSVELDERSLDKATRCLGKLSTEVSKMKQKDANKLNEEYQRLVRGLAESGA------LGGAA-----------GAGSAASPADAMLANPVPRLPDALAQEAVPGNIRRAEHFLTFMKKVVEHLKTLLRVDSTQKQSPLAFLHYLQTKTALEVKPLRFTYSRLNSLLRTLEVTHLDEFNPLQDVADFATLV 420          
BLAST of mRNA_H-elongata_contig88171.16344.1 vs. uniprot
Match: A0A7S2GG08_9STRA (DNA helicase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GG08_9STRA)

HSP 1 Score: 279 bits (714), Expect = 1.570e-87
Identity = 156/250 (62.40%), Postives = 177/250 (70.80%), Query Frame = 1
Query:    1 WCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLEAASRCLGKISSKVADMKRTDQARLNEEYQRLVSGLADSGLGRSSGGVGGTSTAAGVSARAGGGPGTAGAAADAIPANPALPADILQEAVPGNIRRAEHFVSFLRKIVEHFKLRV----RVQSVESETPLAFVHRLQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLV 738
            WCPYFLARH+INHA VLVYNYQYMLDPKVAGMVSRELE+ESVV+FDEAHNIDNVC EALSV LD+RS+ AA + L  IS+KV ++K  D +RL +EY+RLV+GL D                             AG   D I ANP+LPAD+L EAVPGNIRRAEHFVSFLR I+ H + R+       +VE+ETPLAFVHRL   T  E KPLKFAYSRLNSLLRTLEVT LD + PL DV D  TLV
Sbjct:  233 WCPYFLARHVINHAKVLVYNYQYMLDPKVAGMVSRELESESVVIFDEAHNIDNVCIEALSVALDRRSITAAHQSLDAISTKVREVKTRDASRLQDEYRRLVAGLNDG----------------------------AGGQTDTILANPSLPADVLSEAVPGNIRRAEHFVSFLRTILTHLEQRMISTAENDTVETETPLAFVHRLCGDTHHEIKPLKFAYSRLNSLLRTLEVTSLDQYNPLQDVTDLITLV 454          
BLAST of mRNA_H-elongata_contig88171.16344.1 vs. uniprot
Match: A0A7S2N290_9STRA (DNA helicase (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2N290_9STRA)

HSP 1 Score: 268 bits (684), Expect = 2.140e-87
Identity = 146/251 (58.17%), Postives = 181/251 (72.11%), Query Frame = 1
Query:    1 WCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLEAASRCLGKISSKVADMKRTDQARLNEEYQRLVSGLADSGLGRSSGGVGGTSTAAGVSARAGGGPGTAGAAADAIPANPALPADILQEAVPGNIRRAEHFVSFLRKIVEHFKLRVRVQS-----VESETPLAFVHRLQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLV 738
            WCPY+L R  INHAN+LV+NYQYMLDPKVA MVS+ELEAES++VFDEAHNID+VC EALSVD+++R LE A+R LG++SS+V+ +K +D ARL  EYQ LVSGL D GL           T A                +D    +  L  D+L +AVPGNIRRAEHF++F++K+VEH K R+R  +     V+SETPLAF+HRL   T+LE KPLKFAYSRL+SLLRTL+V+ LDDF  L DVADFATL+
Sbjct:    1 WCPYYLTRQAINHANILVFNYQYMLDPKVAKMVSKELEAESIIVFDEAHNIDSVCIEALSVDINERGLEQATRSLGRLSSEVSRIKASDNARLQAEYQNLVSGLIDQGL---------LDTPA----------------SDIGLTSNVLSPDVLNQAVPGNIRRAEHFIAFMKKLVEHLKARLRSVAGPNGGVQSETPLAFLHRLMGGTSLEAKPLKFAYSRLSSLLRTLQVSNLDDFNALTDVADFATLL 226          
BLAST of mRNA_H-elongata_contig88171.16344.1 vs. uniprot
Match: A0A7S2D9H7_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D9H7_9STRA)

HSP 1 Score: 279 bits (714), Expect = 9.500e-85
Identity = 156/250 (62.40%), Postives = 177/250 (70.80%), Query Frame = 1
Query:    1 WCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLEAASRCLGKISSKVADMKRTDQARLNEEYQRLVSGLADSGLGRSSGGVGGTSTAAGVSARAGGGPGTAGAAADAIPANPALPADILQEAVPGNIRRAEHFVSFLRKIVEHFKLRV----RVQSVESETPLAFVHRLQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLV 738
            WCPYFLARH+INHA VLVYNYQYMLDPKVAGMVSRELE+ESVV+FDEAHNIDNVC EALSV LD+RS+ AA + L  IS+KV ++K  D +RL +EY+RLV+GL D                             AG   D I ANP+LPAD+L EAVPGNIRRAEHFVSFLR I+ H + R+       +VE+ETPLAFVHRL   T  E KPLKFAYSRLNSLLRTLEVT LD + PL DV D  TLV
Sbjct:  233 WCPYFLARHVINHAKVLVYNYQYMLDPKVAGMVSRELESESVVIFDEAHNIDNVCIEALSVALDRRSITAAHQSLDAISTKVREVKTRDASRLQDEYRRLVAGLNDG----------------------------AGGQTDTILANPSLPADVLSEAVPGNIRRAEHFVSFLRTILTHLEQRMISTAENDTVETETPLAFVHRLCGDTHHEIKPLKFAYSRLNSLLRTLEVTSLDQYNPLQDVTDLITLV 454          
BLAST of mRNA_H-elongata_contig88171.16344.1 vs. uniprot
Match: A0A7R9U4D1_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4D1_9STRA)

HSP 1 Score: 280 bits (716), Expect = 1.030e-84
Identity = 147/246 (59.76%), Postives = 182/246 (73.98%), Query Frame = 1
Query:    1 WCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLEAASRCLGKISSKVADMKRTDQARLNEEYQRLVSGLADSGLGRSSGGVGGTSTAAGVSARAGGGPGTAGAAADAIPANPALPADILQEAVPGNIRRAEHFVSFLRKIVEHFKLRVRVQSVESETPLAFVHRLQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLV 738
            WCPYFLARH++ HANVL+YNYQYMLDPKVAG+VS ELE +SVVVFDEAHNIDNVC EA+SV + +  L+A++R LG ++SKV +MK +D  RLN EYQRLVSGLA SG                        PG+   A D+I +NP+LPADIL E+VPGNIR+AEHF++F+RKIV H K ++R    + ETP AF+H+L ++T LE KP+KF YSRLNSLLRTLEVT LDD   L ++ADFATL+
Sbjct:  233 WCPYFLARHVLKHANVLIYNYQYMLDPKVAGLVSSELEEDSVVVFDEAHNIDNVCIEAMSVQISRPILDASTRSLGALASKVEEMKASDVERLNAEYQRLVSGLAMSGPA----------------------PGSYTVATDSILSNPSLPADILAESVPGNIRKAEHFLTFMRKIVRHLKDQLRNPEAKWETPQAFLHQLHEMTGLEAKPMKFTYSRLNSLLRTLEVTSLDDHSDLAEIADFATLL 456          
BLAST of mRNA_H-elongata_contig88171.16344.1 vs. uniprot
Match: A0A8K1FGF4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FGF4_PYTOL)

HSP 1 Score: 270 bits (691), Expect = 3.490e-82
Identity = 141/246 (57.32%), Postives = 185/246 (75.20%), Query Frame = 1
Query:    1 WCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLEAASRCLGKISSKVADMKRTDQARLNEEYQRLVSGLADSGLGRSSGGVGGTSTAAGVSARAGGGPGTAGAAADAIPANPALPADILQEAVPGNIRRAEHFVSFLRKIVEHFKLRVRVQSVESETPLAFVHRLQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLV 738
            WCPYFL R+++ +A+V+VYNYQYMLDPKV+ MVSR  E ES+VVFDEAHNIDNVC EALSV+LD+RSL+ ASR L  IS++V  MK+ D+ARL+ EY+RLV GL      RSS  V   +     + +A         + D + ANP LP D+L EA+PGNIRRAEHF++F+R+++E+ + R+RV++VESETP AF+H L Q  A+E KP+KF Y+RLNSL+RTLE+T L+++  L DVADFATLV
Sbjct:  191 WCPYFLTRYVVTYADVIVYNYQYMLDPKVSAMVSRAFEKESIVVFDEAHNIDNVCIEALSVELDRRSLDRASRNLTTISAQVNKMKQADKARLDAEYRRLVEGL------RSSSAVVAPTYVNPANQQA------IDTSNDILTANPVLPDDVLDEAIPGNIRRAEHFIAFMRRLIEYLRTRIRVRNVESETPQAFLHHLNQAIAMETKPMKFCYTRLNSLMRTLEITNLEEYNSLTDVADFATLV 424          
BLAST of mRNA_H-elongata_contig88171.16344.1 vs. uniprot
Match: A0A2P4X6T2_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X6T2_9STRA)

HSP 1 Score: 265 bits (676), Expect = 1.950e-81
Identity = 143/249 (57.43%), Postives = 180/249 (72.29%), Query Frame = 1
Query:    1 WCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLEAASRCLGKISSKVADMKRTDQARLNEEYQRLVSGLADSGLGRSSGGVGGTSTAAGVSARAGGGPGTAGA---AADAIPANPALPADILQEAVPGNIRRAEHFVSFLRKIVEHFKLRVRVQSVESETPLAFVHRLQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLV 738
            WCPYFL R+++  A+V+VYNYQYMLDPKV+ +VSR  E ES+VVFDEAHNIDNVC EALSVDLD+RSL+ ASR L  +SS+V  +K+ D++RL+ EY+RLV GL  S                 V A     P T  A   A D + ANP LP D+L EA+PGNIRRAEHFV+F+R+++E+ + R+RV+ VESETP AF+H L Q   +E KP+KF Y+RLNSLLRTLEVT L+++  L DVADFATLV
Sbjct:  195 WCPYFLTRYVVTFADVVVYNYQYMLDPKVSQLVSRSFEKESIVVFDEAHNIDNVCIEALSVDLDRRSLDRASRNLTTLSSQVNKLKQADKSRLDAEYRRLVEGLRSSNA---------------VVAPTYTDPTTNNAIDTANDILIANPVLPDDVLDEAIPGNIRRAEHFVAFMRRLIEYLRQRIRVRQVESETPQAFLHHLHQAINMEIKPMKFCYTRLNSLLRTLEVTNLEEYNSLTDVADFATLV 428          
BLAST of mRNA_H-elongata_contig88171.16344.1 vs. uniprot
Match: A0A7S2XLG2_9STRA (General transcription and DNA repair factor IIH helicase subunit XPD n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XLG2_9STRA)

HSP 1 Score: 269 bits (688), Expect = 3.750e-81
Identity = 146/251 (58.17%), Postives = 182/251 (72.51%), Query Frame = 1
Query:    1 WCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHNIDNVCTEALSVDLDKRSLEAASRCLGKISSKVADMKRTDQARLNEEYQRLVSGLADSGLGRSSGGVGGTSTAAGVSARAGGGPGTAGAAADAIPANPALPADILQEAVPGNIRRAEHFVSFLRKIVEHFKLRVRVQS-----VESETPLAFVHRLQQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLV 738
            WCPY+L R  INHAN+LV+NYQYMLDPKVA MVS+ELE+ES++VFDEAHNID+VC EALSV +++R LE A+R LG++SS+V+ +K +D  RL  EYQ LV+GL D GL      +   +  +G+                   A+ AL +D+L EAVPGNIRRAEHFV+F++KIVEH K R+R  S     V+SETPLAF+HR+   T+LE KPLKFAYSRL SLLRTLEV+ LDDF  L DVADFATL+
Sbjct:  279 WCPYYLTRQAINHANILVFNYQYMLDPKVAKMVSKELESESIIVFDEAHNIDSVCIEALSVTINERGLEQATRSLGRLSSEVSRIKSSDNQRLQNEYQNLVNGLIDQGL------LNAPANESGL-------------------ASNALSSDVLNEAVPGNIRRAEHFVAFMKKIVEHLKARLRAVSGPNGGVQSETPLAFLHRMMNGTSLEAKPLKFAYSRLASLLRTLEVSNLDDFNALTDVADFATLL 504          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88171.16344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDN2_ECTSI1.250e-13183.71General transcription and DNA repair factor IIH he... [more]
A0A836CJZ4_9STRA1.520e-10872.76General transcription and DNA repair factor IIH he... [more]
K8YZX4_NANGC4.520e-9565.73General transcription and DNA repair factor IIH he... [more]
A0A7S2GG08_9STRA1.570e-8762.40DNA helicase (Fragment) n=1 Tax=Dictyocha speculum... [more]
A0A7S2N290_9STRA2.140e-8758.17DNA helicase (Fragment) n=1 Tax=Helicotheca tamesi... [more]
A0A7S2D9H7_9STRA9.500e-8562.40General transcription and DNA repair factor IIH he... [more]
A0A7R9U4D1_9STRA1.030e-8459.76General transcription and DNA repair factor IIH he... [more]
A0A8K1FGF4_PYTOL3.490e-8257.32Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2P4X6T2_9STRA1.950e-8157.43General transcription and DNA repair factor IIH he... [more]
A0A7S2XLG2_9STRA3.750e-8158.17General transcription and DNA repair factor IIH he... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88171contigH-elongata_contig88171:176..2529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score403.7
Seed ortholog evalue6.3e-110
Seed eggNOG ortholog2880.D8LDN2
Preferred nameERCC2
KEGG koko:K10844
KEGG Pathwayko03022,ko03420,map03022,map03420
KEGG ModuleM00290
GOsGO:0000018,GO:0000019,GO:0000109,GO:0000112,GO:0000166,GO:0000428,GO:0000439,GO:0000717,GO:0000988,GO:0000990,GO:0000991,GO:0001109,GO:0001111,GO:0001112,GO:0001113,GO:0001120,GO:0001503,GO:0001701,GO:0001942,GO:0002244,GO:0002262,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005675,GO:0005694,GO:0005700,GO:0005703,GO:0005705,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006139,GO:0006259,GO:0006281,GO:0006283,GO:0006289,GO:0006293,GO:0006294,GO:0006296,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006357,GO:0006360,GO:0006361,GO:0006363,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007059,GO:0007088,GO:0007272,GO:0007275,GO:0007346,GO:0007348,GO:0007399,GO:0007417,GO:0007568,GO:0008022,GO:0008026,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0008283,GO:0008366,GO:0008544,GO:0009058,GO:0009059,GO:0009266,GO:0009314,GO:0009408,GO:0009411,GO:0009416,GO:0009452,GO:0009628,GO:0009650,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009794,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009913,GO:0009987,GO:0010001,GO:0010389,GO:0010467,GO:0010468,GO:0010525,GO:0010528,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010628,GO:0010927,GO:0010948,GO:0010972,GO:0012501,GO:0014003,GO:0015630,GO:0016043,GO:0016070,GO:0016071,GO:0016310,GO:0016462,GO:0016591,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0021510,GO:0021700,GO:0021782,GO:0022008,GO:0022010,GO:0022402,GO:0022404,GO:0022405,GO:0022607,GO:0030097,GO:0030099,GO:0030154,GO:0030182,GO:0030198,GO:0030218,GO:0030282,GO:0030554,GO:0030855,GO:0030880,GO:0031214,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0031974,GO:0031981,GO:0032288,GO:0032289,GO:0032291,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032806,GO:0032989,GO:0032991,GO:0033043,GO:0033554,GO:0033683,GO:0034101,GO:0034367,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0035264,GO:0035315,GO:0035639,GO:0036094,GO:0036211,GO:0036260,GO:0040007,GO:0040016,GO:0042063,GO:0042303,GO:0042552,GO:0042592,GO:0042623,GO:0042633,GO:0043009,GO:0043062,GO:0043139,GO:0043141,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043249,GO:0043254,GO:0043388,GO:0043412,GO:0043588,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045786,GO:0045893,GO:0045911,GO:0045930,GO:0045935,GO:0045944,GO:0045951,GO:0045995,GO:0046483,GO:0047485,GO:0048468,GO:0048469,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048589,GO:0048646,GO:0048699,GO:0048709,GO:0048731,GO:0048820,GO:0048821,GO:0048856,GO:0048863,GO:0048869,GO:0048872,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051052,GO:0051054,GO:0051098,GO:0051099,GO:0051101,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051239,GO:0051252,GO:0051254,GO:0051276,GO:0051301,GO:0051716,GO:0051726,GO:0051783,GO:0051983,GO:0055029,GO:0060218,GO:0060255,GO:0060429,GO:0061515,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070816,GO:0070911,GO:0071103,GO:0071695,GO:0071704,GO:0071817,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090575,GO:0097159,GO:0097367,GO:0097659,GO:0098687,GO:0098773,GO:0140097,GO:0140110,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902494,GO:1902554,GO:1902680,GO:1902749,GO:1902750,GO:1902911,GO:1903506,GO:1903508,GO:1990234,GO:1990391,GO:2000026,GO:2000112,GO:2001141
EggNOG free text desc.ATP-dependent DNA helicase activity
EggNOG OGsCOG1199@1,KOG1131@2759
EC3.6.4.12
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionATP-dependent helicase, C-terminal
Ec32 orthologEc-19_001310.1
Exons5
Model size738
Cds size738
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88171.16344.1prot_H-elongata_contig88171.16344.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig88171 176..2529 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931282.9943345-CDS-H-elongata_contig88171:175..2451622931282.9943345-CDS-H-elongata_contig88171:175..245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88171 176..245 -
1691679772.3847413-CDS-H-elongata_contig88171:175..2451691679772.3847413-CDS-H-elongata_contig88171:175..245Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88171 176..245 -
1622931283.0551472-CDS-H-elongata_contig88171:499..6451622931283.0551472-CDS-H-elongata_contig88171:499..645Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88171 500..645 -
1691679772.3991072-CDS-H-elongata_contig88171:499..6451691679772.3991072-CDS-H-elongata_contig88171:499..645Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88171 500..645 -
1622931283.0736113-CDS-H-elongata_contig88171:1073..13521622931283.0736113-CDS-H-elongata_contig88171:1073..1352Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88171 1074..1352 -
1691679772.4193506-CDS-H-elongata_contig88171:1073..13521691679772.4193506-CDS-H-elongata_contig88171:1073..1352Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88171 1074..1352 -
1622931283.1046078-CDS-H-elongata_contig88171:1754..19131622931283.1046078-CDS-H-elongata_contig88171:1754..1913Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88171 1755..1913 -
1691679772.4298742-CDS-H-elongata_contig88171:1754..19131691679772.4298742-CDS-H-elongata_contig88171:1754..1913Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88171 1755..1913 -
1622931283.12175-CDS-H-elongata_contig88171:2445..25291622931283.12175-CDS-H-elongata_contig88171:2445..2529Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88171 2446..2529 -
1691679772.4422855-CDS-H-elongata_contig88171:2445..25291691679772.4422855-CDS-H-elongata_contig88171:2445..2529Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88171 2446..2529 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig88171.16344.1

>prot_H-elongata_contig88171.16344.1 ID=prot_H-elongata_contig88171.16344.1|Name=mRNA_H-elongata_contig88171.16344.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=246bp
WCPYFLARHIINHANVLVYNYQYMLDPKVAGMVSRELEAESVVVFDEAHN
IDNVCTEALSVDLDKRSLEAASRCLGKISSKVADMKRTDQARLNEEYQRL
VSGLADSGLGRSSGGVGGTSTAAGVSARAGGGPGTAGAAADAIPANPALP
ADILQEAVPGNIRRAEHFVSFLRKIVEHFKLRVRVQSVESETPLAFVHRL
QQVTALERKPLKFAYSRLNSLLRTLEVTGLDDFRPLVDVADFATLV
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mRNA from alignment at H-elongata_contig88171:176..2529-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig88171.16344.1 ID=mRNA_H-elongata_contig88171.16344.1|Name=mRNA_H-elongata_contig88171.16344.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2354bp|location=Sequence derived from alignment at H-elongata_contig88171:176..2529- (Himanthalia elongata Himel1 dioecious)
TGGTGTCCCTACTTCCTGGCGAGGCACATAATCAACCACGCAAACGTCCT CGTGTACAACTACCAGTACATGCTGGACCCAAAGGTGGGGGTTTCTCCTA TTTTGAGGGAGGGGGGCGGGGGGGAGTGGTTATAAAAATGGGCAGGGATT TCTTGCCATATTGTTGACAGCATGTACTTTTTGTATAGACGTGTTACCCA CACACTCTTAGGCCCTACTCAACAATAACCTTCATATAAAACCAAAAAGT TTATGGGGGGGAATATTGAATATTGTGTACCAGTAAAGCGTCAAATATCG ACAAGGAGGATAAAGTTTTACTGCGAGCAGGGGAGGTGCTGAGACGCGGA ACTTAAAGACCGTAAGCACAAGGAAAGGCAGCGTGCTACATTATTAAATT TGAATAGTCACCCGTTACCCAGAGCAAACATGCCCCCACCAGAACTTCAC GATAAGGGTCTCCGAACATTATTGCGTTTGTAAGTTTCGAGTTCTTTTAC GCGCCGCGTGTTGAGGCTGTAGCGATGCGCGGCCGTGCAGCTCATTTCTC TCTCTCTTTCCTAGCTCACATCCTTTCAACCGTATTTCTGTTGTTAATGG CTTGACTTTCGGACAGGTGGCGGGGATGGTTTCCAGAGAGCTGGAGGCCG AGAGCGTGGTGGTGTTCGACGAGGCTCATAACATCGACAACGTGTGTACT GAGGCCCTTAGCGTGGACCTGGACAAGCGGAGCCTCGAAGCCGCGTCGCG CTGCCTCGGAAAGATCTCTTCCAAGGTTCGCGGGTGTCGCTCTGTTGCAG GACGCCGCTGGTAGGCTCCACGGGAATTTATGCTGACGGACGCGGACCGA AATGGCTACCAAGACGAACTCATTGCTTGTACGGGGGTGCAAAACGCATT TGTTTGTTTGTTTGTTTTTGTGGGGGGGGTTGAGGGGAAGGTAGCAGAGA GGAATGTAGCGCCACGAGTCTGTACACTTTCATGAGTGAAACAACGTTCG TGTTTTATCGAGGCCTTCCTTTATGTGGAGATGCCAAACCGATTCACCCA ATTCGCGCTCCGGTCCGGAGCTTTCGTTATGCTCTCAAGCTTTCCACAGA AAAGCTTTGACCTCACCCATCCGAAAAAACAAAATATAAAAACATTTATA CATTGTGTTTGTAAATTGCTGAAAAAGGTGGCGGACATGAAGCGCACCGA TCAGGCGCGACTGAACGAGGAATACCAGCGGCTGGTCAGCGGCCTCGCCG ATTCAGGCCTCGGCCGCTCGAGCGGCGGTGTCGGGGGCACGTCCACCGCG GCAGGCGTTTCAGCGAGAGCCGGAGGAGGACCGGGGACTGCCGGGGCGGC GGCGGATGCCATCCCTGCCAACCCGGCCCTGCCGGCAGACATCCTGCAGG AGGCGGTGCCGGGGAACATCCGGCGGGCGGAGCATTTCGTGTCATTTTTG CGCAAGGTTCAAAGATATGAATATATTAATAGTTTTAGTGCGTCTCGGGA TTATTTTGTCTGGATTTTCGTGTGTGTGTGTGTGTGTGTGTGTCTCGCGC GCGTCAGTTAGGCTGATCCATTGTTTTCCATTCGACCACATGCTAAATCG TGGACCTAGGAGTTTTAAGTATTTTGGTTGGTGGAGAGCGCGCGCGGGGG GGGGGAAACGCCGCACCATGCATTGTTTTTGCTATTGCGCGTTCTTGCTC ATGCGGGATTCTGGCGTGCCCTTTGTGTACGCAGGTTTGATAAAGCGGCA TAACCTCTCTCATACTCTTGGTCCTCCGGCTCCTGGTCATAAACAGGCGC GGCGAGTGAAGCATTGGGATATTAGATTTACTCTCTGCTTTTTGTCCCTC CCCATGTCACCTTTCACATTTCCCCCCGAGCCAGATCGTGGAGCACTTCA AGTTGCGCGTGCGGGTGCAGAGCGTGGAGTCGGAAACCCCGCTGGCCTTC GTCCACCGGCTACAGCAGGTCACGGCCCTAGAACGGAAGCCTCTCAAGTT CGCCTACTCCCGGCTTAACTCCCTTTTAAGGTGTGTCTTTTTTTCTCTTC TCCCTATCCCTATCCCTATCCCGTAGAGCGCAAAGTGGAAACACCGCGGA TTTTTTTGATTCCGAAAGCCCGGTACAGTACGAGTACCCGAATTATAAAA TCAGGAAACCTCTGTTGGGATTTCGATCTCGCGTAACCTGCAGGAAGACA AGAGGGGAAAAATTCTCGTATCCCCCTTTTCCCCCTTAACCACCCTATTT TTTTTCTTCCCGCTTTGTCGCTCGTTCTGGGCAGGACGCTGGAGGTGACG GGACTGGATGACTTCCGTCCCCTGGTGGATGTGGCCGATTTTGCGACGCT GGTA
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Coding sequence (CDS) from alignment at H-elongata_contig88171:176..2529-

>mRNA_H-elongata_contig88171.16344.1 ID=mRNA_H-elongata_contig88171.16344.1|Name=mRNA_H-elongata_contig88171.16344.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1476bp|location=Sequence derived from alignment at H-elongata_contig88171:176..2529- (Himanthalia elongata Himel1 dioecious)
TGGTGTCCCTACTTCCTGGCGAGGCACATAATCAACCACGCAAACGTCCT
CGTGTACAACTACCAGTACATGCTGGACCCAAAGTGGTGTCCCTACTTCC
TGGCGAGGCACATAATCAACCACGCAAACGTCCTCGTGTACAACTACCAG
TACATGCTGGACCCAAAGGTGGCGGGGATGGTTTCCAGAGAGCTGGAGGC
CGAGAGCGTGGTGGTGTTCGACGAGGCTCATAACATCGACAACGTGTGTA
CTGAGGCCCTTAGCGTGGACCTGGACAAGCGGAGCCTCGAAGCCGCGTCG
CGCTGCCTCGGAAAGATCTCTTCCAAGGTGGCGGGGATGGTTTCCAGAGA
GCTGGAGGCCGAGAGCGTGGTGGTGTTCGACGAGGCTCATAACATCGACA
ACGTGTGTACTGAGGCCCTTAGCGTGGACCTGGACAAGCGGAGCCTCGAA
GCCGCGTCGCGCTGCCTCGGAAAGATCTCTTCCAAGGTGGCGGACATGAA
GCGCACCGATCAGGCGCGACTGAACGAGGAATACCAGCGGCTGGTCAGCG
GCCTCGCCGATTCAGGCCTCGGCCGCTCGAGCGGCGGTGTCGGGGGCACG
TCCACCGCGGCAGGCGTTTCAGCGAGAGCCGGAGGAGGACCGGGGACTGC
CGGGGCGGCGGCGGATGCCATCCCTGCCAACCCGGCCCTGCCGGCAGACA
TCCTGCAGGAGGCGGTGCCGGGGAACATCCGGCGGGCGGAGCATTTCGTG
TCATTTTTGCGCAAGGTGGCGGACATGAAGCGCACCGATCAGGCGCGACT
GAACGAGGAATACCAGCGGCTGGTCAGCGGCCTCGCCGATTCAGGCCTCG
GCCGCTCGAGCGGCGGTGTCGGGGGCACGTCCACCGCGGCAGGCGTTTCA
GCGAGAGCCGGAGGAGGACCGGGGACTGCCGGGGCGGCGGCGGATGCCAT
CCCTGCCAACCCGGCCCTGCCGGCAGACATCCTGCAGGAGGCGGTGCCGG
GGAACATCCGGCGGGCGGAGCATTTCGTGTCATTTTTGCGCAAGATCGTG
GAGCACTTCAAGTTGCGCGTGCGGGTGCAGAGCGTGGAGTCGGAAACCCC
GCTGGCCTTCGTCCACCGGCTACAGCAGGTCACGGCCCTAGAACGGAAGC
CTCTCAAGTTCGCCTACTCCCGGCTTAACTCCCTTTTAAGATCGTGGAGC
ACTTCAAGTTGCGCGTGCGGGTGCAGAGCGTGGAGTCGGAAACCCCGCTG
GCCTTCGTCCACCGGCTACAGCAGGTCACGGCCCTAGAACGGAAGCCTCT
CAAGTTCGCCTACTCCCGGCTTAACTCCCTTTTAAGGACGCTGGAGGTGA
CGGGACTGGATGACTTCCGTCCCCTGGTGGATGTGGCCGATTTTGCGACG
CTGGTAGACGCTGGAGGTGACGGGACTGGATGACTTCCGTCCCCTGGTGG
ATGTGGCCGATTTTGCGACGCTGGTA
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