mRNA_H-elongata_contig88149.16340.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig88149.16340.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE) HSP 1 Score: 155 bits (391), Expect = 8.190e-42 Identity = 77/99 (77.78%), Postives = 85/99 (85.86%), Query Frame = 1
Query: 1 VPFIYDLRNSLEDAIDDLNELPPSSDADVNTARAEMMPCVIALRDDFINRWGDGRDILTYAESNRRQPRGFKLVQVLATALDPRTKILYGVEENEKADV 297
VPFIYDLRNSLEDAIDDL ELPP SDA+VNTA A +MPC+ ALRDD+I+RWGDG +IL Y E RRQP GFK V VLATALDPRTKI YGV+E+EKADV
Sbjct: 204 VPFIYDLRNSLEDAIDDLVELPPDSDANVNTAWAAVMPCIKALRDDYIDRWGDGHNILIYKEGPRRQPGGFKPVHVLATALDPRTKIPYGVDEDEKADV 302
BLAST of mRNA_H-elongata_contig88149.16340.1 vs. uniprot
Match: A0A6H5JVE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVE5_9PHAE) HSP 1 Score: 135 bits (341), Expect = 4.510e-37 Identity = 66/83 (79.52%), Postives = 73/83 (87.95%), Query Frame = 1
Query: 49 DLNELPPSSDADVNTARAEMMPCVIALRDDFINRWGDGRDILTYAESNRRQPRGFKLVQVLATALDPRTKILYGVEENEKADV 297
DL ELPP SDA+VNTARA +MPC+ ALRDDFINRWGDGR+IL Y E RRQP GFK VQVLATALDPRTKIL+GV+E+EKADV
Sbjct: 143 DLAELPPDSDANVNTARAAVMPCIKALRDDFINRWGDGRNILNYKEGPRRQPAGFKPVQVLATALDPRTKILHGVDEDEKADV 225
BLAST of mRNA_H-elongata_contig88149.16340.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE) HSP 1 Score: 99.0 bits (245), Expect = 1.920e-22 Identity = 49/97 (50.52%), Postives = 66/97 (68.04%), Query Frame = 1
Query: 7 FIYDLRNSLEDAIDDLNELPPSSDADVNTARAEMMPCVIALRDDFINRWGDGRDILTYAESNRRQPRGFKLVQVLATALDPRTKILYGVEENEKADV 297
+I DLR+ L++AI+ L +++ V A+ +++ C AL+ D RW DG D+L Y E RRQPRGFK QVLATALDPR+K LYG+EE E +DV
Sbjct: 205 YIADLRDELDEAIERLQAYSCPAESIVAEAKKDILRCAPALQTDLSRRWRDGTDVLVYTEGPRRQPRGFKKKQVLATALDPRSKSLYGIEETEHSDV 301
BLAST of mRNA_H-elongata_contig88149.16340.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 1.870e-21 Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = 1
Query: 136 DFINRWGDGRDILTYAESNRRQPRGFKLVQVLATALDPRTKILYGVEENEKADV 297
DFINRWGDGR+IL Y E RRQP GFK VQVLATALDPRTKILYGV+E+EKADV
Sbjct: 50 DFINRWGDGRNILIYKEGRRRQPGGFKPVQVLATALDPRTKILYGVDEDEKADV 103
BLAST of mRNA_H-elongata_contig88149.16340.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE) HSP 1 Score: 95.5 bits (236), Expect = 8.230e-21 Identity = 47/98 (47.96%), Postives = 66/98 (67.35%), Query Frame = 1
Query: 4 PFIYDLRNSLEDAIDDLNELPPSSDADVNTARAEMMPCVIALRDDFINRWGDGRDILTYAESNRRQPRGFKLVQVLATALDPRTKILYGVEENEKADV 297
P+I DL++ L++A++ L +++ V A+ +++ C AL+ D RWGD D+L Y E RRQPRGFK QVLATAL PR+K LYG+EE E +DV
Sbjct: 232 PYIADLQDGLDEAVERLQAHSCPAESIVAEAKKDVILCAQALQTDLSRRWGDRTDVLVYTEGPRRQPRGFKKEQVLATALGPRSKSLYGIEETEHSDV 329
BLAST of mRNA_H-elongata_contig88149.16340.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE) HSP 1 Score: 93.2 bits (230), Expect = 4.900e-20 Identity = 52/100 (52.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query: 1 VPFIYDLRNSLEDAIDDLNELPPSS-DADVNTARAEMMPCVIALRDDFINRWGDGRDILTYAESNRRQPRGFKLVQVLATALDPRTKILYGVEENEKADV 297
VP I +LRN LE AI DL A A ++P AL +DF+NRWGDG IL Y E RRQP+GFKL QV ATA+DPR K LYG+ + E A V
Sbjct: 302 VPKIGELRNGLEAAIADLRATDRFGISASTREAMEAVLPDAEALWEDFLNRWGDGSSILEYREGKRRQPQGFKLQQVCATAVDPRAKHLYGIRQAEHASV 401
BLAST of mRNA_H-elongata_contig88149.16340.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI) HSP 1 Score: 84.3 bits (207), Expect = 6.550e-17 Identity = 47/95 (49.47%), Postives = 56/95 (58.95%), Query Frame = 1
Query: 16 DLRNSLEDAIDDLNELPPSSDADVNTARAEMM-PCVIALRDDFINRWGDGRDILTYAESNRRQPRGFKLVQVLATALDPRTKILYGVEENEKADV 297
+LR LE AI DL + + E + P AL DF NRWGDG +IL Y E RRQP+GFK QV ATALDPR K LYG+++ E A V
Sbjct: 271 ELREGLEAAITDLKAVAQQGLKETTQKAMEAVRPDAEALMADFTNRWGDGSNILEYREGKRRQPQGFKRKQVYATALDPRAKHLYGIQQREHAGV 365
BLAST of mRNA_H-elongata_contig88149.16340.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE) HSP 1 Score: 56.6 bits (135), Expect = 3.550e-7 Identity = 35/99 (35.35%), Postives = 55/99 (55.56%), Query Frame = 1
Query: 1 VPFIYDLRNSLEDAIDDLNELPPSSDADVNTARAEMMPCVIALRDDFINRWGDGRDILTYAESNRRQPRGFKLVQVLATALDPRTKILYGVEENEKADV 297
+P+I DLR+ L++A++ L +++ V A+ ++ F + ++ +PRGFK QVLATALDPR+K LYG+EE E +DV
Sbjct: 275 IPYIADLRDELDEAVERLQAHACPAESIVAEAKKDVF---------FAPKHVRPTSVIV-------EPRGFKKKQVLATALDPRSKSLYGIEETEHSDV 357 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88149.16340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig88149.16340.1 >prot_H-elongata_contig88149.16340.1 ID=prot_H-elongata_contig88149.16340.1|Name=mRNA_H-elongata_contig88149.16340.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp VPFIYDLRNSLEDAIDDLNELPPSSDADVNTARAEMMPCVIALRDDFINRback to top mRNA from alignment at H-elongata_contig88149:1595..1894+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig88149.16340.1 ID=mRNA_H-elongata_contig88149.16340.1|Name=mRNA_H-elongata_contig88149.16340.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=300bp|location=Sequence derived from alignment at H-elongata_contig88149:1595..1894+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig88149:1595..1894+ >mRNA_H-elongata_contig88149.16340.1 ID=mRNA_H-elongata_contig88149.16340.1|Name=mRNA_H-elongata_contig88149.16340.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig88149:1595..1894+ (Himanthalia elongata Himel1 dioecious)back to top |