mRNA_H-elongata_contig88149.16340.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig88149.16340.1
Unique NamemRNA_H-elongata_contig88149.16340.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig88149.16340.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 8.190e-42
Identity = 77/99 (77.78%), Postives = 85/99 (85.86%), Query Frame = 1
Query:    1 VPFIYDLRNSLEDAIDDLNELPPSSDADVNTARAEMMPCVIALRDDFINRWGDGRDILTYAESNRRQPRGFKLVQVLATALDPRTKILYGVEENEKADV 297
            VPFIYDLRNSLEDAIDDL ELPP SDA+VNTA A +MPC+ ALRDD+I+RWGDG +IL Y E  RRQP GFK V VLATALDPRTKI YGV+E+EKADV
Sbjct:  204 VPFIYDLRNSLEDAIDDLVELPPDSDANVNTAWAAVMPCIKALRDDYIDRWGDGHNILIYKEGPRRQPGGFKPVHVLATALDPRTKIPYGVDEDEKADV 302          
BLAST of mRNA_H-elongata_contig88149.16340.1 vs. uniprot
Match: A0A6H5JVE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVE5_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 4.510e-37
Identity = 66/83 (79.52%), Postives = 73/83 (87.95%), Query Frame = 1
Query:   49 DLNELPPSSDADVNTARAEMMPCVIALRDDFINRWGDGRDILTYAESNRRQPRGFKLVQVLATALDPRTKILYGVEENEKADV 297
            DL ELPP SDA+VNTARA +MPC+ ALRDDFINRWGDGR+IL Y E  RRQP GFK VQVLATALDPRTKIL+GV+E+EKADV
Sbjct:  143 DLAELPPDSDANVNTARAAVMPCIKALRDDFINRWGDGRNILNYKEGPRRQPAGFKPVQVLATALDPRTKILHGVDEDEKADV 225          
BLAST of mRNA_H-elongata_contig88149.16340.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.920e-22
Identity = 49/97 (50.52%), Postives = 66/97 (68.04%), Query Frame = 1
Query:    7 FIYDLRNSLEDAIDDLNELPPSSDADVNTARAEMMPCVIALRDDFINRWGDGRDILTYAESNRRQPRGFKLVQVLATALDPRTKILYGVEENEKADV 297
            +I DLR+ L++AI+ L      +++ V  A+ +++ C  AL+ D   RW DG D+L Y E  RRQPRGFK  QVLATALDPR+K LYG+EE E +DV
Sbjct:  205 YIADLRDELDEAIERLQAYSCPAESIVAEAKKDILRCAPALQTDLSRRWRDGTDVLVYTEGPRRQPRGFKKKQVLATALDPRSKSLYGIEETEHSDV 301          
BLAST of mRNA_H-elongata_contig88149.16340.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.870e-21
Identity = 45/54 (83.33%), Postives = 48/54 (88.89%), Query Frame = 1
Query:  136 DFINRWGDGRDILTYAESNRRQPRGFKLVQVLATALDPRTKILYGVEENEKADV 297
            DFINRWGDGR+IL Y E  RRQP GFK VQVLATALDPRTKILYGV+E+EKADV
Sbjct:   50 DFINRWGDGRNILIYKEGRRRQPGGFKPVQVLATALDPRTKILYGVDEDEKADV 103          
BLAST of mRNA_H-elongata_contig88149.16340.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 8.230e-21
Identity = 47/98 (47.96%), Postives = 66/98 (67.35%), Query Frame = 1
Query:    4 PFIYDLRNSLEDAIDDLNELPPSSDADVNTARAEMMPCVIALRDDFINRWGDGRDILTYAESNRRQPRGFKLVQVLATALDPRTKILYGVEENEKADV 297
            P+I DL++ L++A++ L      +++ V  A+ +++ C  AL+ D   RWGD  D+L Y E  RRQPRGFK  QVLATAL PR+K LYG+EE E +DV
Sbjct:  232 PYIADLQDGLDEAVERLQAHSCPAESIVAEAKKDVILCAQALQTDLSRRWGDRTDVLVYTEGPRRQPRGFKKEQVLATALGPRSKSLYGIEETEHSDV 329          
BLAST of mRNA_H-elongata_contig88149.16340.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 4.900e-20
Identity = 52/100 (52.00%), Postives = 61/100 (61.00%), Query Frame = 1
Query:    1 VPFIYDLRNSLEDAIDDLNELPPSS-DADVNTARAEMMPCVIALRDDFINRWGDGRDILTYAESNRRQPRGFKLVQVLATALDPRTKILYGVEENEKADV 297
            VP I +LRN LE AI DL         A    A   ++P   AL +DF+NRWGDG  IL Y E  RRQP+GFKL QV ATA+DPR K LYG+ + E A V
Sbjct:  302 VPKIGELRNGLEAAIADLRATDRFGISASTREAMEAVLPDAEALWEDFLNRWGDGSSILEYREGKRRQPQGFKLQQVCATAVDPRAKHLYGIRQAEHASV 401          
BLAST of mRNA_H-elongata_contig88149.16340.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 6.550e-17
Identity = 47/95 (49.47%), Postives = 56/95 (58.95%), Query Frame = 1
Query:   16 DLRNSLEDAIDDLNELPPSSDADVNTARAEMM-PCVIALRDDFINRWGDGRDILTYAESNRRQPRGFKLVQVLATALDPRTKILYGVEENEKADV 297
            +LR  LE AI DL  +      +      E + P   AL  DF NRWGDG +IL Y E  RRQP+GFK  QV ATALDPR K LYG+++ E A V
Sbjct:  271 ELREGLEAAITDLKAVAQQGLKETTQKAMEAVRPDAEALMADFTNRWGDGSNILEYREGKRRQPQGFKRKQVYATALDPRAKHLYGIQQREHAGV 365          
BLAST of mRNA_H-elongata_contig88149.16340.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 3.550e-7
Identity = 35/99 (35.35%), Postives = 55/99 (55.56%), Query Frame = 1
Query:    1 VPFIYDLRNSLEDAIDDLNELPPSSDADVNTARAEMMPCVIALRDDFINRWGDGRDILTYAESNRRQPRGFKLVQVLATALDPRTKILYGVEENEKADV 297
            +P+I DLR+ L++A++ L      +++ V  A+ ++          F  +      ++        +PRGFK  QVLATALDPR+K LYG+EE E +DV
Sbjct:  275 IPYIADLRDELDEAVERLQAHACPAESIVAEAKKDVF---------FAPKHVRPTSVIV-------EPRGFKKKQVLATALDPRSKSLYGIEETEHSDV 357          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig88149.16340.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5L7Y8_9PHAE8.190e-4277.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVE5_9PHAE4.510e-3779.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVI1_9PHAE1.920e-2250.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWI1_9PHAE1.870e-2183.33Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JHP9_9PHAE8.230e-2147.96Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A6H5KUY5_9PHAE4.900e-2052.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCS5_ECTSI6.550e-1749.47Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5JJV8_9PHAE3.550e-735.35Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig88149contigH-elongata_contig88149:1595..1894 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.3
Seed ortholog evalue3.4e-14
Seed eggNOG ortholog2880.D7G5Z0
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size301
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931282.5137582-CDS-H-elongata_contig88149:1594..18941622931282.5137582-CDS-H-elongata_contig88149:1594..1894Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88149 1595..1894 +
1691679772.2385511-CDS-H-elongata_contig88149:1594..18941691679772.2385511-CDS-H-elongata_contig88149:1594..1894Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig88149 1595..1894 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig88149.16340.1prot_H-elongata_contig88149.16340.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig88149 1595..1894 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig88149.16340.1

>prot_H-elongata_contig88149.16340.1 ID=prot_H-elongata_contig88149.16340.1|Name=mRNA_H-elongata_contig88149.16340.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=100bp
VPFIYDLRNSLEDAIDDLNELPPSSDADVNTARAEMMPCVIALRDDFINR
WGDGRDILTYAESNRRQPRGFKLVQVLATALDPRTKILYGVEENEKADV*
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mRNA from alignment at H-elongata_contig88149:1595..1894+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig88149.16340.1 ID=mRNA_H-elongata_contig88149.16340.1|Name=mRNA_H-elongata_contig88149.16340.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=300bp|location=Sequence derived from alignment at H-elongata_contig88149:1595..1894+ (Himanthalia elongata Himel1 dioecious)
GTACCCTTCATCTACGACCTCCGCAACAGCCTCGAGGACGCGATCGACGA CCTCAACGAGCTACCGCCCAGCTCGGACGCCGACGTCAACACAGCGAGGG CGGAGATGATGCCGTGCGTCATCGCGCTCCGAGATGATTTCATCAACCGG TGGGGAGACGGACGTGACATCCTGACCTACGCGGAGAGCAACAGGCGGCA ACCACGTGGTTTCAAACTTGTGCAGGTGCTAGCAACCGCACTCGACCCTC GCACGAAGATACTATATGGAGTGGAGGAAAACGAGAAGGCTGACGTTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig88149:1595..1894+

>mRNA_H-elongata_contig88149.16340.1 ID=mRNA_H-elongata_contig88149.16340.1|Name=mRNA_H-elongata_contig88149.16340.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=600bp|location=Sequence derived from alignment at H-elongata_contig88149:1595..1894+ (Himanthalia elongata Himel1 dioecious)
GTACCCTTCATCTACGACCTCCGCAACAGCCTCGAGGACGCGATCGACGA
CCTCAACGAGCTACCGCCCAGCTCGGACGCCGACGTCAACACAGCGAGGG
CGGAGATGATGCCGTGCGTCATCGCGCTCCGAGATGATTTCATCAACCGG
TGGGGAGACGGACGTGACATCCTGACCTACGCGGAGAGCAACAGGCGGCA
ACCACGTGGTTTCAAACTTGTGCAGGTGCTAGCAACCGCACTCGACCCTC
GCACGAAGATACTATATGGAGTGGAGGAAAACGAGAAGGCTGACGTTTGA
GTACCCTTCATCTACGACCTCCGCAACAGCCTCGAGGACGCGATCGACGA
CCTCAACGAGCTACCGCCCAGCTCGGACGCCGACGTCAACACAGCGAGGG
CGGAGATGATGCCGTGCGTCATCGCGCTCCGAGATGATTTCATCAACCGG
TGGGGAGACGGACGTGACATCCTGACCTACGCGGAGAGCAACAGGCGGCA
ACCACGTGGTTTCAAACTTGTGCAGGTGCTAGCAACCGCACTCGACCCTC
GCACGAAGATACTATATGGAGTGGAGGAAAACGAGAAGGCTGACGTTTGA
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