mRNA_H-elongata_contig87269.16270.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig87269.16270.1
Unique NamemRNA_H-elongata_contig87269.16270.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig87269.16270.1 vs. uniprot
Match: D8LQ30_ECTSI (Lactamase_B domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ30_ECTSI)

HSP 1 Score: 365 bits (937), Expect = 8.490e-124
Identity = 177/229 (77.29%), Postives = 202/229 (88.21%), Query Frame = 1
Query:   13 YRQLFEKESSTLTYILGDAESKEAIIIDPVDLTAERDAEMVIQMGLKPKMLINTHVHADHITGTGKLKGMLPD-TRSVISELSGAQADVKLADGDKVHFGSRFVEPARATPGHTAGCTTFVLDDKSACFTGDTLLIRGCGRTDFQGGSSEVLYSSVHSKIFTLPNDCTVYPAHDYKGRHSSTVGEEIKYNSRLTKSLDEFKDIMAKLNLSYPKKIDQAVPANIVCGIVD 696
            +RQLFEKESST TYILGDAE+K+A+IIDPVD TAERD++MV +MGLKP +L+NTHVHADHITGTGKLKG+LP   +S +SE SG QADVK+ DGDK+ FGSR++E ARATPGHTAGC TFVLDDKSACFTGDTLL+RGCGRTDFQGGSSE LY+SV  KIFTLPNDCTVYP HDY+GRHSSTVGEE  YN RLTK ++EF  IM+ LNL YPK+ID+AVPAN+VCGI D
Sbjct:  151 FRQLFEKESSTFTYILGDAETKQAVIIDPVDKTAERDSQMVTEMGLKPTLLLNTHVHADHITGTGKLKGLLPGGAKSGVSEASGGQADVKIHDGDKIRFGSRYLE-ARATPGHTAGCMTFVLDDKSACFTGDTLLVRGCGRTDFQGGSSETLYASVKGKIFTLPNDCTVYPGHDYQGRHSSTVGEEKAYNPRLTKPVEEFVSIMSNLNLPYPKQIDKAVPANMVCGICD 378          
BLAST of mRNA_H-elongata_contig87269.16270.1 vs. uniprot
Match: A0A7S4D913_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D913_HETAK)

HSP 1 Score: 298 bits (764), Expect = 1.240e-99
Identity = 155/239 (64.85%), Postives = 184/239 (76.99%), Query Frame = 1
Query:    1 KSFEYRQLFEKESSTLTYILGDAESKEAIIIDPVDLTAERDAEMVIQMGLKPKMLINTHVHADHITGTGKLKGM-------LPDTRSVISELSGAQADVKLADGDKVHFGSRFVEPARATPGHTAGCTTFVLDDKSACFTGDTLLIRGCGRTDFQGGSSEVLYSSVHSKIFTLPNDCTVYPAHDYKGRHSSTVGEEIKYNSRLTKSLDEFKDIMAKLNLSYPKKIDQAVPANIVCGIVD 696
            +S  +RQLFE ESST TYILG   +KEAIIIDPVDLTAERDA+ + +MGL      NTHVHADH+TG+GKLK +       LP  RSVI+E+SGAQADVK+ DGD + FG+R V    +TPGHT GC ++VLDD S  FTGD LLIRGCGRTDFQ GS+E LY+SVHSKIFTLP+ C VYPAHDYKGR  S+VGEE  +N RLTK L+EFK+IM  L L YPKKID ++PAN+VCG+ +
Sbjct:    5 RSLIFRQLFEAESSTYTYILGCPSTKEAIIIDPVDLTAERDAQFIREMGLTLVYAANTHVHADHVTGSGKLKQIFNVAESELP-VRSVIAEVSGAQADVKVNDGDVISFGTRSVR-VLSTPGHTDGCLSYVLDDNSMVFTGDALLIRGCGRTDFQQGSAETLYNSVHSKIFTLPDSCLVYPAHDYKGRTCSSVGEEKTHNLRLTKPLEEFKEIMDNLGLPYPKKIDASLPANMVCGLYE 241          
BLAST of mRNA_H-elongata_contig87269.16270.1 vs. uniprot
Match: A0A6A4VV65_AMPAM (Persulfide dioxygenase ETHE1, mitochondrial n=1 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=A0A6A4VV65_AMPAM)

HSP 1 Score: 299 bits (765), Expect = 1.310e-99
Identity = 148/226 (65.49%), Postives = 180/226 (79.65%), Query Frame = 1
Query:   13 YRQLFEKESSTLTYILGDAESKEAIIIDPVDLTAERDAEMVIQMGLKPKMLINTHVHADHITGTGKLKGMLPDTRSVISELSGAQADVKLADGDKVHFGSRFVEPARATPGHTAGCTTFVLDDKSACFTGDTLLIRGCGRTDFQGGSSEVLYSSVHSKIFTLPNDCTVYPAHDYKGRHSSTVGEEIKYNSRLTKSLDEFKDIMAKLNLSYPKKIDQAVPANIVCGI 690
            Y QLF++ES T TY+L D  SKEA++IDPV   ++RDA +V  +GLK   +INTH+HADHITGTG+LK ++P  +SVIS  SGA+ADVKLADGDKV FG+  +E  RATPGHT GC T+VL  +  CFTGD LLIRGCGRTDFQGGSS+ LY SVH +IF+LP D TVYPAHDYKG+ +STVGEE +YN RLT++ +EF  IMA LNL+YPKKID A+PAN VCG+
Sbjct:   18 YLQLFDRESCTYTYLLADPCSKEAVLIDPVIELSDRDATLVKDLGLKLVYVINTHMHADHITGTGRLKRLVPGCKSVISATSGAEADVKLADGDKVKFGALELE-VRATPGHTEGCVTYVLHSQRMCFTGDALLIRGCGRTDFQGGSSDTLYDSVHGRIFSLPEDYTVYPAHDYKGQTASTVGEEKRYNPRLTRNKEEFNAIMAGLNLAYPKKIDVALPANKVCGL 242          
BLAST of mRNA_H-elongata_contig87269.16270.1 vs. uniprot
Match: UPI001C90BB25 (persulfide dioxygenase ETHE1, mitochondrial-like isoform X2 n=3 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=UPI001C90BB25)

HSP 1 Score: 300 bits (768), Expect = 6.960e-99
Identity = 148/230 (64.35%), Postives = 182/230 (79.13%), Query Frame = 1
Query:    1 KSFEYRQLFEKESSTLTYILGDAESKEAIIIDPVDLTAERDAEMVIQMGLKPKMLINTHVHADHITGTGKLKGMLPDTRSVISELSGAQADVKLADGDKVHFGSRFVEPARATPGHTAGCTTFVLDDKSACFTGDTLLIRGCGRTDFQGGSSEVLYSSVHSKIFTLPNDCTVYPAHDYKGRHSSTVGEEIKYNSRLTKSLDEFKDIMAKLNLSYPKKIDQAVPANIVCGI 690
            + F +RQLF++ES T TY+L D  SKEA++IDPV   ++RDA +V  +GLK   +INTH+HADHITGTG+LK ++P  RSVIS  SGA+AD+KLADGDKV FG+  +E  RATPGHT GC T+VL  +  CFTGD LLIRGCGRTDFQGGSS+ LY SVH +IF+LP D TVYPAHDYKG+ ++TVGEE +YN RLT++  EF  IMA LNL+YPKKID A+PAN VCG+
Sbjct:    3 QQFFFRQLFDRESCTYTYLLADPCSKEAVLIDPVIELSDRDATLVKDLGLKLVYVINTHMHADHITGTGRLKRLVPGCRSVISATSGAEADIKLADGDKVKFGALELE-VRATPGHTEGCVTYVLHSQRMCFTGDALLIRGCGRTDFQGGSSDTLYDSVHGRIFSLPEDYTVYPAHDYKGQTATTVGEEKRYNPRLTRNKQEFNAIMAGLNLAYPKKIDVALPANKVCGL 231          
BLAST of mRNA_H-elongata_contig87269.16270.1 vs. uniprot
Match: UPI001C92582B (persulfide dioxygenase ETHE1, mitochondrial-like isoform X1 n=2 Tax=Amphibalanus amphitrite TaxID=1232801 RepID=UPI001C92582B)

HSP 1 Score: 300 bits (768), Expect = 9.300e-99
Identity = 148/230 (64.35%), Postives = 182/230 (79.13%), Query Frame = 1
Query:    1 KSFEYRQLFEKESSTLTYILGDAESKEAIIIDPVDLTAERDAEMVIQMGLKPKMLINTHVHADHITGTGKLKGMLPDTRSVISELSGAQADVKLADGDKVHFGSRFVEPARATPGHTAGCTTFVLDDKSACFTGDTLLIRGCGRTDFQGGSSEVLYSSVHSKIFTLPNDCTVYPAHDYKGRHSSTVGEEIKYNSRLTKSLDEFKDIMAKLNLSYPKKIDQAVPANIVCGI 690
            + F +RQLF++ES T TY+L D  SKEA++IDPV   ++RDA +V  +GLK   +INTH+HADHITGTG+LK ++P  RSVIS  SGA+AD+KLADGDKV FG+  +E  RATPGHT GC T+VL  +  CFTGD LLIRGCGRTDFQGGSS+ LY SVH +IF+LP D TVYPAHDYKG+ ++TVGEE +YN RLT++  EF  IMA LNL+YPKKID A+PAN VCG+
Sbjct:    3 QQFFFRQLFDRESCTYTYLLADPCSKEAVLIDPVIELSDRDATLVKDLGLKLVYVINTHMHADHITGTGRLKRLVPGCRSVISATSGAEADIKLADGDKVKFGALELE-VRATPGHTEGCVTYVLHSQRMCFTGDALLIRGCGRTDFQGGSSDTLYDSVHGRIFSLPEDYTVYPAHDYKGQTATTVGEEKRYNPRLTRNKQEFNAIMAGLNLAYPKKIDVALPANKVCGL 231          
BLAST of mRNA_H-elongata_contig87269.16270.1 vs. uniprot
Match: A0A1A7ZMU6_NOTFU (Ethylmalonic encephalopathy 1 n=14 Tax=Nothobranchius TaxID=28779 RepID=A0A1A7ZMU6_NOTFU)

HSP 1 Score: 294 bits (753), Expect = 4.290e-98
Identity = 146/228 (64.04%), Postives = 177/228 (77.63%), Query Frame = 1
Query:   13 YRQLFEKESSTLTYILGDAESKEAIIIDPVDLTAERDAEMVIQMGLKPKMLINTHVHADHITGTGKLKGMLPDTRSVISELSGAQADVKLADGDKVHFGSRFVEPARATPGHTAGCTTFVLDDKSACFTGDTLLIRGCGRTDFQGGSSEVLYSSVHSKIFTLPNDCTVYPAHDYKGRHSSTVGEEIKYNSRLTKSLDEFKDIMAKLNLSYPKKIDQAVPANIVCGIVD 696
            +RQLFEKES T TY+L D  +KEA+IIDPV  TA+RD ++V ++G K K  +NTH HADHITGTG +K  L   +S IS+ SGA+AD+ L++GDK++FG  F+   R TPGHT GC T VL+D+S  FTGDTLLIRGCGRTDFQ GS E LY SVHSKIFTLP +C +YPAHDYKG+ ++TV EE  YN RLTKSL EF DIM  LNL++PKKID AVPAN++CGI D
Sbjct:    9 FRQLFEKESFTYTYLLADKSTKEAVIIDPVLETADRDVQLVKELGFKLKTAVNTHCHADHITGTGVMKKKLDTMKSAISKHSGAKADIHLSEGDKINFGQFFLS-VRETPGHTDGCITLVLNDESMAFTGDTLLIRGCGRTDFQQGSPEKLYQSVHSKIFTLPAECILYPAHDYKGQTATTVAEESTYNPRLTKSLKEFVDIMDNLNLAHPKKIDVAVPANLLCGIQD 235          
BLAST of mRNA_H-elongata_contig87269.16270.1 vs. uniprot
Match: A0A1S3I4I9_LINUN (persulfide dioxygenase ETHE1, mitochondrial n=2 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3I4I9_LINUN)

HSP 1 Score: 294 bits (752), Expect = 6.300e-98
Identity = 144/228 (63.16%), Postives = 182/228 (79.82%), Query Frame = 1
Query:   13 YRQLFEKESSTLTYILGDAESKEAIIIDPVDLTAERDAEMVIQMGLKPKMLINTHVHADHITGTGKLKGMLPDTRSVISELSGAQADVKLADGDKVHFGSRFVEPARATPGHTAGCTTFVLDDKSACFTGDTLLIRGCGRTDFQGGSSEVLYSSVHSKIFTLPNDCTVYPAHDYKGRHSSTVGEEIKYNSRLTKSLDEFKDIMAKLNLSYPKKIDQAVPANIVCGIVD 696
            +RQLFE  SST TYIL D E+KEA+IIDPV  TAERDA++V ++GL  K  +NTHVHADH+TGTG+LK  +   +SVIS+ +GA+AD+ L +GDKV FG   +E AR+TPGHT GC T+VL+DKS  FTGD LLIRGCGRTDFQ GS   LY SVH++I +LP DC +YPAHDYKGR  ++VGEE+K+N RLTKS +EF +IM  LNL+YPK+ID+AVPAN++CG+ +
Sbjct:    5 FRQLFESVSSTYTYILADEETKEAVIIDPVMETAERDAQLVEELGLTLKYAVNTHVHADHVTGTGELKKRIGGCKSVISKAAGAKADMFLNNGDKVEFGKYHLE-ARSTPGHTNGCMTYVLNDKSRAFTGDALLIRGCGRTDFQQGSPLTLYESVHTQILSLPQDCLLYPAHDYKGRTVTSVGEELKFNPRLTKSKEEFANIMNNLNLNYPKQIDRAVPANMMCGVFE 231          
BLAST of mRNA_H-elongata_contig87269.16270.1 vs. uniprot
Match: A0A6J1MU31_BICAN (persulfide dioxygenase ETHE1, mitochondrial n=1 Tax=Bicyclus anynana TaxID=110368 RepID=A0A6J1MU31_BICAN)

HSP 1 Score: 294 bits (753), Expect = 1.110e-97
Identity = 149/229 (65.07%), Postives = 179/229 (78.17%), Query Frame = 1
Query:    4 SFEYRQLFEKESSTLTYILGDAESKEAIIIDPVDLTAERDAEMVIQMGLKPKMLINTHVHADHITGTGKLKGMLPDTRSVISELSGAQADVKLADGDKVHFGSRFVEPARATPGHTAGCTTFVLDDKSACFTGDTLLIRGCGRTDFQGGSSEVLYSSVHSKIFTLPNDCTVYPAHDYKGRHSSTVGEEIKYNSRLTKSLDEFKDIMAKLNLSYPKKIDQAVPANIVCGI 690
            +F +RQLF+  SST TY+LGD +S EA++IDPV   AERDA ++ ++G K    +NTH+HADHITGTGKLK +LP ++SVIS+ SGAQADV L DGD V+FG+ +   A ATPGHT GC T++  ++   FTGDTLLIRGCGRTDFQ GSSE LY SVHSKIFTLP   T+YPAHDYKG+ ++TVGEE KYN RLTKSL EF DIM  LNL YPK ID+AVPAN VCG+
Sbjct:   36 NFFFRQLFDTVSSTYTYLLGDTKSGEAVLIDPVLEHAERDAALIKELGFKLIYAMNTHMHADHITGTGKLKSLLPGSKSVISKASGAQADVHLFDGDLVNFGA-YQLLATATPGHTNGCLTYISHEQGIAFTGDTLLIRGCGRTDFQEGSSETLYKSVHSKIFTLPESYTLYPAHDYKGQTATTVGEEKKYNPRLTKSLKEFVDIMENLNLPYPKMIDKAVPANRVCGL 263          
BLAST of mRNA_H-elongata_contig87269.16270.1 vs. uniprot
Match: A0A835YKA0_9STRA (Beta-lactamase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKA0_9STRA)

HSP 1 Score: 296 bits (759), Expect = 1.370e-97
Identity = 145/228 (63.60%), Postives = 176/228 (77.19%), Query Frame = 1
Query:   13 YRQLFEKESSTLTYILGDAESKEAIIIDPVDLTAERDAEMVIQMGLKPKMLINTHVHADHITGTGKLKGMLPDTRSVISELSGAQADVKLADGDKVHFGSRFVEPARATPGHTAGCTTFVLDDKSACFTGDTLLIRGCGRTDFQGGSSEVLYSSVHSKIFTLPNDCTVYPAHDYKGRHSSTVGEEIKYNSRLTKSLDEFKDIMAKLNLSYPKKIDQAVPANIVCGIVD 696
            +RQL + ESST TYIL DA +++AI+IDPVD  AERDAE++ +MGL     +NTHVHADH+ G  KL+ + P  RSVIS  SGAQADV +A GD V F  R V   RATPGHT GC +FVLDD+S  FTGD LLIRGCGRTDFQ G+S+ LY SVH+++FTLPND  VYPAHDYKGR +ST+GEE  +N RLTK ++EF+ IMA LNL+YPK+ID AVPAN+ CG+ D
Sbjct:  108 FRQLLDLESSTYTYILADAYTRDAIVIDPVDTMAERDAEIITEMGLNLLFALNTHVHADHVNGASKLRALFPQMRSVISRASGAQADVAVAPGDSVEFAGRSVV-VRATPGHTDGCCSFVLDDRSMVFTGDALLIRGCGRTDFQQGNSKSLYESVHTQLFTLPNDTIVYPAHDYKGRGNSTIGEERMFNPRLTKDIEEFQRIMAGLNLAYPKRIDAAVPANMKCGLYD 334          
BLAST of mRNA_H-elongata_contig87269.16270.1 vs. uniprot
Match: A0A830H7Y5_9CHLO (Ethylmalonic encephalopathy 1 n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830H7Y5_9CHLO)

HSP 1 Score: 291 bits (746), Expect = 3.790e-97
Identity = 147/228 (64.47%), Postives = 172/228 (75.44%), Query Frame = 1
Query:   13 YRQLFEKESSTLTYILGDAESKEAIIIDPVDLTAERDAEMVIQMGLKPKMLINTHVHADHITGTGKLKGMLPDTRSVISELSGAQADVKLADGDKVHFGSRFVEPARATPGHTAGCTTFVLDDKSACFTGDTLLIRGCGRTDFQGGSSEVLYSSVHSKIFTLPNDCTVYPAHDYKGRHSSTVGEEIKYNSRLTKSLDEFKDIMAKLNLSYPKKIDQAVPANIVCGIVD 696
            +RQLF++ES T TY+L D    E I+IDPV    ERD E+  Q+ +K K L+NTH HADH+TGTG LK +LPD +SVIS+ SGA+ADV + DGD + FGSR V    ATPGHT GC TFVLDDKS CFTGD +L+RGCGRTDFQ G +  L+ SVH K+F+LP++  VYPAHDYKGR  STVGEE KYN RLTKS DEF DIMA L L YPK ID AVPAN+VCGI D
Sbjct:    3 FRQLFDRESCTYTYLLADG--GEGILIDPVKELVERDVEVAQQLNVKLKYLLNTHCHADHVTGTGDLKKVLPDAKSVISKASGAKADVLVNDGDAIAFGSRHVT-VHATPGHTDGCVTFVLDDKSMCFTGDAVLVRGCGRTDFQQGDAGKLFDSVHEKVFSLPDETFVYPAHDYKGRTRSTVGEEKKYNLRLTKSRDEFIDIMANLGLPYPKMIDVAVPANLVCGIQD 227          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig87269.16270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ30_ECTSI8.490e-12477.29Lactamase_B domain-containing protein n=2 Tax=Ecto... [more]
A0A7S4D913_HETAK1.240e-9964.85Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A6A4VV65_AMPAM1.310e-9965.49Persulfide dioxygenase ETHE1, mitochondrial n=1 Ta... [more]
UPI001C90BB256.960e-9964.35persulfide dioxygenase ETHE1, mitochondrial-like i... [more]
UPI001C92582B9.300e-9964.35persulfide dioxygenase ETHE1, mitochondrial-like i... [more]
A0A1A7ZMU6_NOTFU4.290e-9864.04Ethylmalonic encephalopathy 1 n=14 Tax=Nothobranch... [more]
A0A1S3I4I9_LINUN6.300e-9863.16persulfide dioxygenase ETHE1, mitochondrial n=2 Ta... [more]
A0A6J1MU31_BICAN1.110e-9765.07persulfide dioxygenase ETHE1, mitochondrial n=1 Ta... [more]
A0A835YKA0_9STRA1.370e-9763.60Beta-lactamase-like protein n=1 Tax=Tribonema minu... [more]
A0A830H7Y5_9CHLO3.790e-9764.47Ethylmalonic encephalopathy 1 n=1 Tax=Pycnococcus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig87269contigH-elongata_contig87269:254..2205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score368.6
Seed ortholog evalue2.1e-99
Seed eggNOG ortholog2880.D8LQ30
Preferred nameETHE1
KEGG rclassRC02313
KEGG koko:K10803,ko:K17725
KEGG ReactionR08678
KEGG Pathwayko00920,ko03410,map00920,map03410
KEGG ModuleM00296
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0005488,GO:0005506,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0006518,GO:0006575,GO:0006749,GO:0006790,GO:0006807,GO:0006950,GO:0006970,GO:0007275,GO:0008150,GO:0008152,GO:0009404,GO:0009628,GO:0009651,GO:0009790,GO:0009791,GO:0009793,GO:0009888,GO:0009960,GO:0009987,GO:0010154,GO:0016491,GO:0016701,GO:0016702,GO:0016787,GO:0016788,GO:0017144,GO:0019418,GO:0019748,GO:0022414,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0034641,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043603,GO:0044237,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0050313,GO:0050896,GO:0051186,GO:0051213,GO:0055114,GO:0061458,GO:0070013,GO:0070221,GO:0070813,GO:0071704,GO:1901564
EggNOG free text desc.sulfur dioxygenase activity
EggNOG OGsCOG0491@1,KOG0814@2759
EC1.13.11.18
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029,ko03400
Hectar predicted targeting categoryother localisation
Exons5
Model size699
Cds size699
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig87269.16270.1prot_H-elongata_contig87269.16270.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig87269 254..2205 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931273.641035-CDS-H-elongata_contig87269:253..3341622931273.641035-CDS-H-elongata_contig87269:253..334Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87269 254..334 +
1691679768.770061-CDS-H-elongata_contig87269:253..3341691679768.770061-CDS-H-elongata_contig87269:253..334Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87269 254..334 +
1622931273.6602592-CDS-H-elongata_contig87269:535..7811622931273.6602592-CDS-H-elongata_contig87269:535..781Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87269 536..781 +
1691679768.7807906-CDS-H-elongata_contig87269:535..7811691679768.7807906-CDS-H-elongata_contig87269:535..781Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87269 536..781 +
1622931273.677147-CDS-H-elongata_contig87269:1194..13111622931273.677147-CDS-H-elongata_contig87269:1194..1311Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87269 1195..1311 +
1691679768.7888987-CDS-H-elongata_contig87269:1194..13111691679768.7888987-CDS-H-elongata_contig87269:1194..1311Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87269 1195..1311 +
1622931273.6938004-CDS-H-elongata_contig87269:1799..18921622931273.6938004-CDS-H-elongata_contig87269:1799..1892Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87269 1800..1892 +
1691679768.79981-CDS-H-elongata_contig87269:1799..18921691679768.79981-CDS-H-elongata_contig87269:1799..1892Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87269 1800..1892 +
1622931273.7150352-CDS-H-elongata_contig87269:2043..22051622931273.7150352-CDS-H-elongata_contig87269:2043..2205Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87269 2044..2205 +
1691679768.8088243-CDS-H-elongata_contig87269:2043..22051691679768.8088243-CDS-H-elongata_contig87269:2043..2205Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig87269 2044..2205 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig87269.16270.1

>prot_H-elongata_contig87269.16270.1 ID=prot_H-elongata_contig87269.16270.1|Name=mRNA_H-elongata_contig87269.16270.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=233bp
KSFEYRQLFEKESSTLTYILGDAESKEAIIIDPVDLTAERDAEMVIQMGL
KPKMLINTHVHADHITGTGKLKGMLPDTRSVISELSGAQADVKLADGDKV
HFGSRFVEPARATPGHTAGCTTFVLDDKSACFTGDTLLIRGCGRTDFQGG
SSEVLYSSVHSKIFTLPNDCTVYPAHDYKGRHSSTVGEEIKYNSRLTKSL
DEFKDIMAKLNLSYPKKIDQAVPANIVCGIVD*
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mRNA from alignment at H-elongata_contig87269:254..2205+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig87269.16270.1 ID=mRNA_H-elongata_contig87269.16270.1|Name=mRNA_H-elongata_contig87269.16270.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1952bp|location=Sequence derived from alignment at H-elongata_contig87269:254..2205+ (Himanthalia elongata Himel1 dioecious)
AAATCTTTTGAATACAGGCAGCTGTTCGAAAAAGAATCATCGACCCTTAC GTACATCCTGGGCGATGCCGAGAGCAAGGAGGTAAGGCCGATGGGTACCG GTAAAAACCCACGTGCGCGCCAAAACCTGAAGCCCAGTCACATCAGTCCG GGCATTGTTCATACCCCCGATCACCAACGTATTACATTAATCCTTCTCAT GGATCCTGTATTACACCCTTTCAAAGAAAAAGTAGGCTCTCTCGTATCCC GGGGTGCCGCCCCGTGGTGGTTGACATCGCAGGCCATCATCATCGATCCT GTCGATCTGACTGCCGAACGAGACGCGGAGATGGTGATCCAGATGGGCCT AAAGCCGAAGATGCTGATCAACACGCATGTACACGCAGACCACATCACTG GTACCGGCAAGTTGAAGGGCATGTTGCCCGATACCAGGAGCGTGATCTCC GAGTTGTCTGGGGCACAAGCGGACGTGAAACTCGCGGACGGTGACAAAGT GCACTTCGGTTCCAGGTTTGTCGAACCTGTGAAATGCTGCACCGTTTTTA CCATGCTGTTTTAAGAGTTACACAATGACTCTCAATGGAAGTGGGTATTA TTTGTATGTTTCATTTTCGACGGAGGCGATAGCGTTGCTCTTTCTTGACA TTTGGACCCGCTGCTAAAACGTTAGCAGGTAGGCTGGCGGGTGGGCTTGA AATGTATTGCCAACGATTGGTGGTTGAGGACTATATTTAGAGTGAACGGG ATTGACGCCATGGTGCATCTCACGGTGCCGAGGAACACAATACATGATTT AGCCGAAGCATTGATTTTTATTTTCGTGCCAATGTCGGTACAGTACCGCA TAAATCGATATTCACTTGGTAGGTTCCCTTTTTATATACAACTTCGAAGC CCACCCGTGCTTTGTACCCCTTGTCGACCAGGTTCATCGAGGCGCGCGCA ACCCCTGGCCATACGGCTGGTTGTACGACGTTCGTTTTGGACGACAAGAG CGCTTGCTTCACTGGAGATACCCTGCTCATCCGCGGTTGTGGGAGGACGG ACTTCCAGGTGTGGCATGCAATGCAGAGTTGGCCTGCGCGGACGACTTGG TTTACGATACGCCGTTCACGCAGTAGTCCGATGGGTCTTCCCATAACGAG GCGTTTCCTAACTCTAGAGCTATCAGTCACGCCAGTCGCAATCTGTTAGG GTCGCGTTGGGGATGTATAAGAACAATACTCGCCTTTGATGGACCAGGTT ACGAGTGGTACAGAAGGCGGTACCTTCCGAGTTCCGCGCACGTGTTGCGC GCTTTTTGTGTGATGTGGAAATTGTTACATTTAGGGTAGGGAAGGAACGA GCACACTTCAAGTTATCGCCATAGCGATTACCGTGCCCGCGGTGAGCCCA TAGACCCCCCCCCCCCCCCCCCCCCCCCCCCATTTACTTAAGCACTGCCT ATTACCATTGACCTACTCAACACGGTTTGAGGCCAAAACCATTTGACCAC TGATCTGACCCTCGTACCCTCGATTTGCGTCTTCGGCCGGAAACAGGGCG GCTCGAGCGAAGTCCTCTACTCGTCCGTGCACAGCAAGATCTTCACGCTA CCCAACGACTGTACTGTGTACCCTGCCCACGACTATAAGGTTCGTGAGTT ACTGTAGTAATACGGGGGTGCAACCCAGTACGAGTGTGACGCACCCTGTC TTGAGCACACATATTCCGTACCCCACAGATTGTTTATCCCAAGCTTTGGG CACAGTACCTAATGTGCGCCGTTCTCCCTTTGACTTACAGGGGCGACACA GCAGCACTGTAGGGGAGGAGATAAAGTACAACTCCCGTCTCACCAAGTCT TTGGATGAGTTTAAAGACATTATGGCGAAGCTGAATCTTTCTTACCCGAA GAAGATCGACCAAGCCGTCCCGGCCAACATTGTGTGCGGCATCGTCGACT AA
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Coding sequence (CDS) from alignment at H-elongata_contig87269:254..2205+

>mRNA_H-elongata_contig87269.16270.1 ID=mRNA_H-elongata_contig87269.16270.1|Name=mRNA_H-elongata_contig87269.16270.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1398bp|location=Sequence derived from alignment at H-elongata_contig87269:254..2205+ (Himanthalia elongata Himel1 dioecious)
AAATCTTTTGAATACAGGCAGCTGTTCGAAAAAGAATCATCGACCCTTAC
GTACATCCTGGGCGATGCCGAGAGCAAGGAGAAATCTTTTGAATACAGGC
AGCTGTTCGAAAAAGAATCATCGACCCTTACGTACATCCTGGGCGATGCC
GAGAGCAAGGAGGCCATCATCATCGATCCTGTCGATCTGACTGCCGAACG
AGACGCGGAGATGGTGATCCAGATGGGCCTAAAGCCGAAGATGCTGATCA
ACACGCATGTACACGCAGACCACATCACTGGTACCGGCAAGTTGAAGGGC
ATGTTGCCCGATACCAGGAGCGTGATCTCCGAGTTGTCTGGGGCACAAGC
GGACGTGAAACTCGCGGACGGTGACAAAGTGCACTTCGGTTCCAGGTTTG
TCGAACCTGCCATCATCATCGATCCTGTCGATCTGACTGCCGAACGAGAC
GCGGAGATGGTGATCCAGATGGGCCTAAAGCCGAAGATGCTGATCAACAC
GCATGTACACGCAGACCACATCACTGGTACCGGCAAGTTGAAGGGCATGT
TGCCCGATACCAGGAGCGTGATCTCCGAGTTGTCTGGGGCACAAGCGGAC
GTGAAACTCGCGGACGGTGACAAAGTGCACTTCGGTTCCAGGTTTGTCGA
ACCTGCGCGCGCAACCCCTGGCCATACGGCTGGTTGTACGACGTTCGTTT
TGGACGACAAGAGCGCTTGCTTCACTGGAGATACCCTGCTCATCCGCGGT
TGTGGGAGGACGGACTTCCAGGCGCGCGCAACCCCTGGCCATACGGCTGG
TTGTACGACGTTCGTTTTGGACGACAAGAGCGCTTGCTTCACTGGAGATA
CCCTGCTCATCCGCGGTTGTGGGAGGACGGACTTCCAGGGCGGCTCGAGC
GAAGTCCTCTACTCGTCCGTGCACAGCAAGATCTTCACGCTACCCAACGA
CTGTACTGTGTACCCTGCCCACGACTATAAGGGCGGCTCGAGCGAAGTCC
TCTACTCGTCCGTGCACAGCAAGATCTTCACGCTACCCAACGACTGTACT
GTGTACCCTGCCCACGACTATAAGGGGCGACACAGCAGCACTGTAGGGGA
GGAGATAAAGTACAACTCCCGTCTCACCAAGTCTTTGGATGAGTTTAAAG
ACATTATGGCGAAGCTGAATCTTTCTTACCCGAAGAAGATCGACCAAGCC
GTCCCGGCCAACATTGTGTGCGGCATCGTCGACTAAGGGCGACACAGCAG
CACTGTAGGGGAGGAGATAAAGTACAACTCCCGTCTCACCAAGTCTTTGG
ATGAGTTTAAAGACATTATGGCGAAGCTGAATCTTTCTTACCCGAAGAAG
ATCGACCAAGCCGTCCCGGCCAACATTGTGTGCGGCATCGTCGACTAA
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