mRNA_H-elongata_contig86144.16191.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig86144.16191.1
Unique NamemRNA_H-elongata_contig86144.16191.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig86144.16191.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 315 bits (806), Expect = 5.910e-93
Identity = 174/458 (37.99%), Postives = 270/458 (58.95%), Query Frame = 1
Query:    1 PKGKTVLGTRVVFKRKIEKDGRIEKYKCCLVAQGFRQVKGVHYEESSSPNPAQASIRMVLNMIAALGWEARQLDVDMTYLEADVEEEIYVEIPEAYRDSREQVGLLKKAMYGLVHAGLLW*KQFGIELEAKGFQRSQADPCVFRRILHGIVVVVIVVYVDDLLVASATKGDEE*AVKDLCSCFPIKDLGEASYYLGCYITRDRNAGTLKFDQHQYIQTVAERFGVTKTSIVP*A-----------EKMRQIPSREIVGALMWAATMTRPDISFTAHQLAKFNDNPGPTHWRASRKALQYLWRTRDVGITYGGEPGGGGKLSAWIDADYGTCPDTRRSVSGGVVMMADGAISWFSRVQKVTAAASSESEYIALAEMVNELRFLRQVKEFMTPPID-AAIKIHEDNEDAIKMAKNRFSSHRTRHVDIKHHIVRDAIDGGVVHIEYVRSGEQHADILTKSV 1338
            P+G+  + ++  F  K  K+G+I+ +K  LVA+GF Q+  V Y  SSSP P+ ASI+++L +    G      DV   Y  A ++EE+++++P    D   ++   ++A+YGL  +G  W       L   GF++ +ADPCVFR+++  +VV++IV+YVDD+LVA + +  EE  +  L   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V  TS +P             E+  + P RE +G++MW +T +RPD+SF    +A+    P   HW A +K L YL  TRD+GITY  + G G  L+ ++DA Y    D RRSVSG    +    +S  S+ Q + + +S+E+EYIA  E V E  F+R V  F+ P    ++IK+ EDN+ AI + +N  SS RT+H+D+++H +R     G + +++V + EQHAD+LTK++
Sbjct:  776 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEE-LLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY--QRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1229          
BLAST of mRNA_H-elongata_contig86144.16191.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 315 bits (806), Expect = 4.700e-92
Identity = 174/458 (37.99%), Postives = 270/458 (58.95%), Query Frame = 1
Query:    1 PKGKTVLGTRVVFKRKIEKDGRIEKYKCCLVAQGFRQVKGVHYEESSSPNPAQASIRMVLNMIAALGWEARQLDVDMTYLEADVEEEIYVEIPEAYRDSREQVGLLKKAMYGLVHAGLLW*KQFGIELEAKGFQRSQADPCVFRRILHGIVVVVIVVYVDDLLVASATKGDEE*AVKDLCSCFPIKDLGEASYYLGCYITRDRNAGTLKFDQHQYIQTVAERFGVTKTSIVP*A-----------EKMRQIPSREIVGALMWAATMTRPDISFTAHQLAKFNDNPGPTHWRASRKALQYLWRTRDVGITYGGEPGGGGKLSAWIDADYGTCPDTRRSVSGGVVMMADGAISWFSRVQKVTAAASSESEYIALAEMVNELRFLRQVKEFMTPPID-AAIKIHEDNEDAIKMAKNRFSSHRTRHVDIKHHIVRDAIDGGVVHIEYVRSGEQHADILTKSV 1338
            P+G+  + ++  F  K  K+G+I+ +K  LVA+GF Q+  V Y  SSSP P+ ASI+++L +    G      DV   Y  A ++EE+++++P    D   ++   ++A+YGL  +G  W       L   GF++ +ADPCVFR+++  +VV++IV+YVDD+LVA + +  EE  +  L   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V  TS +P             E+  + P RE +G++MW +T +RPD+SF    +A+    P   HW A +K L YL  TRD+GITY  + G G  L+ ++DA Y    D RRSVSG    +    +S  S+ Q + + +S+E+EYIA  E V E  F+R V  F+ P    ++IK+ EDN+ AI + +N  SS RT+H+D+++H +R     G + +++V + EQHAD+LTK++
Sbjct: 1155 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEE-LLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY--QRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1608          
BLAST of mRNA_H-elongata_contig86144.16191.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 315 bits (806), Expect = 5.330e-92
Identity = 174/458 (37.99%), Postives = 270/458 (58.95%), Query Frame = 1
Query:    1 PKGKTVLGTRVVFKRKIEKDGRIEKYKCCLVAQGFRQVKGVHYEESSSPNPAQASIRMVLNMIAALGWEARQLDVDMTYLEADVEEEIYVEIPEAYRDSREQVGLLKKAMYGLVHAGLLW*KQFGIELEAKGFQRSQADPCVFRRILHGIVVVVIVVYVDDLLVASATKGDEE*AVKDLCSCFPIKDLGEASYYLGCYITRDRNAGTLKFDQHQYIQTVAERFGVTKTSIVP*A-----------EKMRQIPSREIVGALMWAATMTRPDISFTAHQLAKFNDNPGPTHWRASRKALQYLWRTRDVGITYGGEPGGGGKLSAWIDADYGTCPDTRRSVSGGVVMMADGAISWFSRVQKVTAAASSESEYIALAEMVNELRFLRQVKEFMTPPID-AAIKIHEDNEDAIKMAKNRFSSHRTRHVDIKHHIVRDAIDGGVVHIEYVRSGEQHADILTKSV 1338
            P+G+  + ++  F  K  K+G+I+ +K  LVA+GF Q+  V Y  SSSP P+ ASI+++L +    G      DV   Y  A ++EE+++++P    D   ++   ++A+YGL  +G  W       L   GF++ +ADPCVFR+++  +VV++IV+YVDD+LVA + +  EE  +  L   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V  TS +P             E+  + P RE +G++MW +T +RPD+SF    +A+    P   HW A +K L YL  TRD+GITY  + G G  L+ ++DA Y    D RRSVSG    +    +S  S+ Q + + +S+E+EYIA  E V E  F+R V  F+ P    ++IK+ EDN+ AI + +N  SS RT+H+D+++H +R     G + +++V + EQHAD+LTK++
Sbjct: 1175 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEE-LLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY--QRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1628          
BLAST of mRNA_H-elongata_contig86144.16191.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 315 bits (806), Expect = 5.820e-92
Identity = 174/458 (37.99%), Postives = 270/458 (58.95%), Query Frame = 1
Query:    1 PKGKTVLGTRVVFKRKIEKDGRIEKYKCCLVAQGFRQVKGVHYEESSSPNPAQASIRMVLNMIAALGWEARQLDVDMTYLEADVEEEIYVEIPEAYRDSREQVGLLKKAMYGLVHAGLLW*KQFGIELEAKGFQRSQADPCVFRRILHGIVVVVIVVYVDDLLVASATKGDEE*AVKDLCSCFPIKDLGEASYYLGCYITRDRNAGTLKFDQHQYIQTVAERFGVTKTSIVP*A-----------EKMRQIPSREIVGALMWAATMTRPDISFTAHQLAKFNDNPGPTHWRASRKALQYLWRTRDVGITYGGEPGGGGKLSAWIDADYGTCPDTRRSVSGGVVMMADGAISWFSRVQKVTAAASSESEYIALAEMVNELRFLRQVKEFMTPPID-AAIKIHEDNEDAIKMAKNRFSSHRTRHVDIKHHIVRDAIDGGVVHIEYVRSGEQHADILTKSV 1338
            P+G+  + ++  F  K  K+G+I+ +K  LVA+GF Q+  V Y  SSSP P+ ASI+++L +    G      DV   Y  A ++EE+++++P    D   ++   ++A+YGL  +G  W       L   GF++ +ADPCVFR+++  +VV++IV+YVDD+LVA + +  EE  +  L   FP K+LGE  ++ GC I RD  AGTL+  Q  YI ++ ERF V  TS +P             E+  + P RE +G++MW +T +RPD+SF    +A+    P   HW A +K L YL  TRD+GITY  + G G  L+ ++DA Y    D RRSVSG    +    +S  S+ Q + + +S+E+EYIA  E V E  F+R V  F+ P    ++IK+ EDN+ AI + +N  SS RT+H+D+++H +R     G + +++V + EQHAD+LTK++
Sbjct: 1318 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMNLNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEE-LLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKREDEEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITY--QRGSGLGLAVYVDASYADTED-RRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1771          
BLAST of mRNA_H-elongata_contig86144.16191.1 vs. uniprot
Match: A0A6H5KKK1_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKK1_9PHAE)

HSP 1 Score: 303 bits (775), Expect = 4.160e-90
Identity = 166/453 (36.64%), Postives = 267/453 (58.94%), Query Frame = 1
Query:   16 VLGTRVVFKRKIEKDGRIEKYKCCLVAQGFRQVKGVHYEESSSPNPAQASIRMVLNMIAALGWEARQLDVDMTYLEADVEEEIYVEIPEAYRDSREQVGLLKKAMYGLVHAGLLW*KQFGIELEAKGFQRSQADPCVFRRILHGIVVVVIVVYVDDLLVASATKGDEE*AVKDLCSCFPIKDLGEASYYLGCYITRDRNAGTLKFDQHQYIQTVAERFGVTKTSIVP*A-----------EKMRQIPSREIVGALMWAATMTRPDISFTAHQLAKFNDNPGPTHWRASRKALQYLWRTRDVGITYGGEPGGGGKLSAWIDADYGTCPDTRRSVSGGVVMMADGAISWFSRVQKVTAAASSESEYIALAEMVNELRFLRQVKEFMTPPIDAA-IKIHEDNEDAIKMAKNRFSSHRTRHVDIKHHIVRDAIDGGVVHIEYVRSGEQHADILTKSV 1338
            V+  R VFK K ++ G+I K K  LVA+GF+Q  GV Y E+ SP    AS R+V+ +      E    D++  +++++++ E+++++P        +V  L K++YGL  A   + K+   EL+  GF++S +DPCV R ++   VV ++ ++VDD+L A  TK   E  V  L    P K+LGE  ++LGC   RDR AGT++  Q  YI++V ERF V +TS +P +           E    +P RE+VG+LMW A  TRPDIS     +A+ +  P  +HW+A++K L YL  T  + + +  +         ++DAD+ +  + RRSVSG +V++A   + W S+ QK  + ++SE+EY+A+ + V E  F+  + +F+ P      I + EDNE AI +A+N  SS R++H+D++HH +R+  + GV+ + +V S EQHADILTK++
Sbjct:  492 VIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAG-TKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKAL 943          
BLAST of mRNA_H-elongata_contig86144.16191.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 297 bits (760), Expect = 5.770e-90
Identity = 167/458 (36.46%), Postives = 267/458 (58.30%), Query Frame = 1
Query:    1 PKGKTVLGTRVVFKRKIEKDGRIEKYKCCLVAQGFRQVKGVHYEESSSPNPAQASIRMVLNMIAALGWEARQLDVDMTYLEADVEEEIYVEIPEAYRDSREQVGLLKKAMYGLVHAGLLW*KQFGIELEAKGFQRSQADPCVFRRILHGIVVVVIVVYVDDLLVASATKGDEE*AVKDLCSCFPIKDLGEASYYLGCYITRDRNAGTLKFDQHQYIQTVAERFGVTKTSIVP*A-----------EKMRQIPSREIVGALMWAATMTRPDISFTAHQLAKFNDNPGPTHWRASRKALQYLWRTRDVGITYGGEPGGGGKLSAWIDADYGTCPDTRRSVSGGVVMMADGAISWFSRVQKVTAAASSESEYIALAEMVNELRFLRQVKEFMTPPIDAA-IKIHEDNEDAIKMAKNRFSSHRTRHVDIKHHIVRDAIDGGVVHIEYVRSGEQHADILTKSV 1338
            P+G  V+  R VFK K ++ G+I K K  LVA+GF+Q  GV Y E+ SP    ASIR+V+ +      E   LD++  + ++ ++ E+ +++P        ++  L K++YGL  A   + K+   +L   GF++S +DPCV R ++   V+ +I ++VDD+L A  TK   E  V+ L    P K+LGE  ++LGC  +RDR AGT++  Q  YI++V ERF + +TS +P +           E+   +P RE+VG LMW A  TRP+ S     +A+ +  P  + W+A++K L YL  T  + + Y  +         ++DAD+ +    RRSVSG +V++A   +SWFS  QK  + ++SE+EYIA+ + V E  F+  + + + P      I + EDNE AI +A+N  SS R++H+D++HH +R+  + GV+ + +V S EQHADILTK++
Sbjct:  252 PEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFFQSKLDHEVLMKLPPGCDSMSGKIVRLNKSLYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAG-TKRLAEVIVEALGDSLPTKNLGEVRFFLGCAFSRDREAGTIEISQESYIRSVLERFNICRTSSIPASPANDSRSVMEDEEAGDVPFREVVGCLMWIANNTRPETSNAVRTVARHSHEPKKSDWKAAQKILSYLKETAHLTLKYKQDTTVDVGTLVYVDADFASKATDRRSVSGALVLVAGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQLLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKAL 708          
BLAST of mRNA_H-elongata_contig86144.16191.1 vs. uniprot
Match: A0A6H5JRL9_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRL9_9PHAE)

HSP 1 Score: 305 bits (780), Expect = 3.180e-89
Identity = 168/458 (36.68%), Postives = 269/458 (58.73%), Query Frame = 1
Query:    1 PKGKTVLGTRVVFKRKIEKDGRIEKYKCCLVAQGFRQVKGVHYEESSSPNPAQASIRMVLNMIAALGWEARQLDVDMTYLEADVEEEIYVEIPEAYRDSREQVGLLKKAMYGLVHAGLLW*KQFGIELEAKGFQRSQADPCVFRRILHGIVVVVIVVYVDDLLVASATKGDEE*AVKDLCSCFPIKDLGEASYYLGCYITRDRNAGTLKFDQHQYIQTVAERFGVTKTSIVP*A-----------EKMRQIPSREIVGALMWAATMTRPDISFTAHQLAKFNDNPGPTHWRASRKALQYLWRTRDVGITYGGEPGGGGKLSAWIDADYGTCPDTRRSVSGGVVMMADGAISWFSRVQKVTAAASSESEYIALAEMVNELRFLRQVKEFMTPPIDAA-IKIHEDNEDAIKMAKNRFSSHRTRHVDIKHHIVRDAIDGGVVHIEYVRSGEQHADILTKSV 1338
            P G  V+  R VFK K ++ G+I K K  LVA+GF+Q  GV Y E+ SP    AS R+V+ +      E    D++  +++++++ E+++++P        +V  L K++YGL  A   + K+   EL+  GF++S +DPCV R ++   VV ++ ++VDD+L A  TK   E  V  L    P K+LGE  ++LGC   RDR AGT++  Q  YI++V ERF V +TS +P +           E    +P RE+VG+LMW A  TRPDIS     +A+ +  P  +HW+A++K L YL  T  + + +  +         ++DAD+ +  + RRSVSG +V++A   + W S+ QK  + ++SE+EY+A+ + V E  F+  + +F+ P      I + EDNE AI +A+N  SS R++H+D++HH +R+  + GV+ + +V S EQHADILTK++
Sbjct:  754 PIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASHRLVVALACKYNLELLHWDIEQAFVQSELDYEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAG-TKSLAEVVVAALGDSLPTKNLGEVRFFLGCAFVRDREAGTIEMSQESYIRSVLERFNVCRTSSIPASPTNDYRSVMEDEGAGDVPFREVVGSLMWIANQTRPDISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKPDNSVDASTLVYVDADFASKANDRRSVSGAIVLVASMPVVWISKTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSAKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSEEQHADILTKAL 1210          
BLAST of mRNA_H-elongata_contig86144.16191.1 vs. uniprot
Match: A0A6H5KZH7_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZH7_9PHAE)

HSP 1 Score: 304 bits (778), Expect = 1.410e-88
Identity = 168/458 (36.68%), Postives = 269/458 (58.73%), Query Frame = 1
Query:    1 PKGKTVLGTRVVFKRKIEKDGRIEKYKCCLVAQGFRQVKGVHYEESSSPNPAQASIRMVLNMIAALGWEARQLDVDMTYLEADVEEEIYVEIPEAYRDSREQVGLLKKAMYGLVHAGLLW*KQFGIELEAKGFQRSQADPCVFRRILHGIVVVVIVVYVDDLLVASATKGDEE*AVKDLCSCFPIKDLGEASYYLGCYITRDRNAGTLKFDQHQYIQTVAERFGVTKTSIVP*A-----------EKMRQIPSREIVGALMWAATMTRPDISFTAHQLAKFNDNPGPTHWRASRKALQYLWRTRDVGITYGGEPGGGGKLSAWIDADYGTCPDTRRSVSGGVVMMADGAISWFSRVQKVTAAASSESEYIALAEMVNELRFLRQVKEFMTPPIDAA-IKIHEDNEDAIKMAKNRFSSHRTRHVDIKHHIVRDAIDGGVVHIEYVRSGEQHADILTKSV 1338
            P G  V+  R VFK K ++ G+I K K  LVA+GF+Q  GV Y E+ SP    AS R+V+ +      E    D++  +++++++ E+++++P       E+V  L K++YGL  A   + K+   EL+  GF++S +DPCV R ++   VV ++ ++VDD+L A  TK   E  V  L    P K+LGE  ++LGC   RDR AGT++  Q  YI++V ERF + +TS +P +           E    +P RE+VG+LMW A+ TR DIS     +A+ +  P  +HW+A++K L YL  T  + + +  +         ++DAD+ +    RRSVSG +V +A   + W SR QK  + ++SE+EY+A+ + V E  F+  + +F+ P +    I + EDNE AI +A+N  SS R++H+D++HH +R+  + GV+ + +V S EQHADILTK++
Sbjct:  928 PIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASFRLVVALACKYNLELLHWDIEQAFVQSELDHEVFMKMPPGCGSMSEKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLRFMMGDEVVGMVAIHVDDILYAG-TKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNIVRTSSIPASLNNDDRSLMEEEGAGDVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKRDSSVDVGTLVYVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSEAEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKAL 1384          
BLAST of mRNA_H-elongata_contig86144.16191.1 vs. uniprot
Match: A0A6H5L3I1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3I1_9PHAE)

HSP 1 Score: 302 bits (773), Expect = 1.510e-88
Identity = 168/458 (36.68%), Postives = 268/458 (58.52%), Query Frame = 1
Query:    1 PKGKTVLGTRVVFKRKIEKDGRIEKYKCCLVAQGFRQVKGVHYEESSSPNPAQASIRMVLNMIAALGWEARQLDVDMTYLEADVEEEIYVEIPEAYRDSREQVGLLKKAMYGLVHAGLLW*KQFGIELEAKGFQRSQADPCVFRRILHGIVVVVIVVYVDDLLVASATKGDEE*AVKDLCSCFPIKDLGEASYYLGCYITRDRNAGTLKFDQHQYIQTVAERFGVTKTSIVP*A-----------EKMRQIPSREIVGALMWAATMTRPDISFTAHQLAKFNDNPGPTHWRASRKALQYLWRTRDVGITYGGEPGGGGKLSAWIDADYGTCPDTRRSVSGGVVMMADGAISWFSRVQKVTAAASSESEYIALAEMVNELRFLRQVKEFMTPPIDAA-IKIHEDNEDAIKMAKNRFSSHRTRHVDIKHHIVRDAIDGGVVHIEYVRSGEQHADILTKSV 1338
            P G  V+  R VFK K ++ G+I K K  LVA+GF+Q  GV Y E+ SP    AS R+V+ +      E    D++  +++++++ E+++++P       E+V  L K++YGL  A   + K+   EL+  GF++S +DPCV   ++   VV ++ ++VDD+L A  TK   E  V  L    P K+LGE  ++LGC   RDR AGT++  Q  YI++V ERF + +TS +P +           E    +P RE+VG+LMW A+ TR DIS     +A+ +  P  +HW+A++K L YL  T  + + +  +         ++DAD+ +    RRSVSG +V +A   + W SR QK  + ++SESEY+A+ + V E  F+  + +F+ P +    I + EDNE AI +A+N  SS R++H+D++HH +R+  + GV+ + +V S EQHADILTK++
Sbjct:  718 PIGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKYGVDYLETFSPTANAASFRLVVALACKYNLELLHWDIEQAFVQSELDHEVFMKMPPGCGSMSEKVVRLNKSLYGLKQASRTFYKRLVSELKRIGFEQSMSDPCVLCFMMGDEVVGMVAIHVDDILYAG-TKSLAEVVVAALGDSLPTKNLGEVKFFLGCEYIRDRKAGTIEISQESYIRSVLERFNIVRTSSIPASLNNDDRSLMEEEGAGDVPFREVVGSLMWIASQTRADISNAVRAVARHSHEPKKSHWKAAQKILNYLLETAHLTLKFKRDSSVDVGTLVYVDADFASKATDRRSVSGAMVFVAAMLVVWISRTQKCVSQSTSESEYLAMGDGVKEALFVNGMLQFLRPSVKPRKIDVLEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKAL 1174          
BLAST of mRNA_H-elongata_contig86144.16191.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 295 bits (755), Expect = 8.010e-86
Identity = 170/459 (37.04%), Postives = 258/459 (56.21%), Query Frame = 1
Query:    1 PKGKTVLGTRVVFKRKIEKDGRIEKYKCCLVAQGFRQVKGVHYEESSSPNPAQASIRMVLNMIAALGWEARQLDVDMTYLEADVEEEIYVEIPEAYRDSREQVGLLKKAMYGLVHAGLLW*KQFGIELEAKGFQRSQADPCVFRRILHGIVVVVIVVYVDDLLVASATKGDEE*AVKDLCSCFPIKDLGEASYYLGCYITRDRNAGTLKFDQHQYIQTVAERFGVTKTSIVP*AEKMRQI------------PSREIVGALMWAATMTRPDISFTAHQLAKFNDNPGPTHWRASRKALQYLWRTRDVGITYGGEPGGGGKLSAWIDADYGTCPDTRRSVSGGVVMMADGAISWFSRVQKVTAAASSESEYIALAEMVNELRFLRQVKEFMTPPIDAA-IKIHEDNEDAIKMAKNRFSSHRTRHVDIKHHIVRDAIDGGVVHIEYVRSGEQHADILTKSV 1338
            P+G+  + T+ VF  K ++ G I  +K  LVA+GF QV G  Y  SSS  PA +SI++ +      G   R  D+   Y  A ++EE+YV I +       +V  +++A+YGL  +G  W  +    L   G+++ +ADPCVFR+I+ G VV +IV+YVDD++   + +  EE  +  L    P+KDLGE ++Y GC I RD   GT    Q  YI  + +RFG+T T+  P A+   ++            P R+ +G LMW AT TRPDI+   + + +    P    W+A  + L YL  T D+GITY    G G  L  ++DA Y      RRSV+G  V +    +S  S+ Q++ + ++SE+EYIA  E V E  F+R V  F+ P    A IK+ EDN+ AI + +N FSS R++H+D++ H +R+    G + +EY+ + EQHAD+LTK++
Sbjct:  775 PEGRKAVSTKWVFDYKTDEKGLITDFKARLVARGFSQVHGQDYHHSSSACPAVSSIKLAMAFATEGGLPTRHFDIKQAYTHAKIQEELYVRIADGSGAMAGKVLKVERALYGLKQSGREWGFEAANILVDSGYEQCRADPCVFRKIVDGKVVSIIVIYVDDIMYVGSEEEGEE-LLTSLRKTLPVKDLGECTWYDGCAIERDLELGTTTLSQKAYIAGLMDRFGITTTASTP-ADPNAELGPKRDDEPGVDKPVRQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITY--VRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVRAVLSFIAPETSGAKIKVLEDNQGAISLVQNPFSSARSKHIDVRFHFIRELFKSGRISVEYIPTDEQHADLLTKAL 1229          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig86144.16191.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSG8_9PHAE5.910e-9337.99Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE4.700e-9237.99Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE5.330e-9237.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE5.820e-9237.99Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5KKK1_9PHAE4.160e-9036.64Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5JV80_9PHAE5.770e-9036.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JRL9_9PHAE3.180e-8936.68Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KZH7_9PHAE1.410e-8836.68Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L3I1_9PHAE1.510e-8836.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKS3_9PHAE8.010e-8637.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig86144contigH-elongata_contig86144:183..1574 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score160.2
Seed ortholog evalue1e-36
Seed eggNOG ortholog67593.Physo139221
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1338
Cds size630
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig86144.16191.1prot_H-elongata_contig86144.16191.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig86144 183..812 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931264.2867632-CDS-H-elongata_contig86144:182..8121622931264.2867632-CDS-H-elongata_contig86144:182..812Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86144 183..812 -
1691679765.164837-CDS-H-elongata_contig86144:182..8121691679765.164837-CDS-H-elongata_contig86144:182..812Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig86144 183..812 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931264.317581-UTR-H-elongata_contig86144:812..8231622931264.317581-UTR-H-elongata_contig86144:812..823Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86144 813..823 -
1691679765.1772237-UTR-H-elongata_contig86144:812..8231691679765.1772237-UTR-H-elongata_contig86144:812..823Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86144 813..823 -
1622931264.3444111-UTR-H-elongata_contig86144:877..15741622931264.3444111-UTR-H-elongata_contig86144:877..1574Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86144 878..1574 -
1691679765.1877038-UTR-H-elongata_contig86144:877..15741691679765.1877038-UTR-H-elongata_contig86144:877..1574Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig86144 878..1574 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig86144.16191.1

>prot_H-elongata_contig86144.16191.1 ID=prot_H-elongata_contig86144.16191.1|Name=mRNA_H-elongata_contig86144.16191.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=210bp
MRQIPSREIVGALMWAATMTRPDISFTAHQLAKFNDNPGPTHWRASRKAL
QYLWRTRDVGITYGGEPGGGGKLSAWIDADYGTCPDTRRSVSGGVVMMAD
GAISWFSRVQKVTAAASSESEYIALAEMVNELRFLRQVKEFMTPPIDAAI
KIHEDNEDAIKMAKNRFSSHRTRHVDIKHHIVRDAIDGGVVHIEYVRSGE
QHADILTKSV
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mRNA from alignment at H-elongata_contig86144:183..1574-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig86144.16191.1 ID=mRNA_H-elongata_contig86144.16191.1|Name=mRNA_H-elongata_contig86144.16191.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1392bp|location=Sequence derived from alignment at H-elongata_contig86144:183..1574- (Himanthalia elongata Himel1 dioecious)
CCAAAAGGGAAGACGGTGCTGGGCACAAGAGTAGTTTTCAAGCGCAAAAT CGAGAAGGATGGAAGGATCGAGAAGTATAAATGTTGTCTCGTGGCGCAGG GTTTTAGGCAGGTCAAAGGCGTACACTACGAGGAATCCTCCTCTCCGAAT CCTGCGCAGGCCAGCATTAGGATGGTACTCAACATGATCGCGGCTCTCGG CTGGGAAGCGCGGCAGCTGGACGTCGACATGACCTACCTGGAGGCCGATG TGGAGGAGGAGATCTACGTTGAGATCCCGGAGGCATACCGTGACTCCAGG GAGCAAGTCGGCCTACTAAAGAAGGCAATGTACGGGCTCGTCCACGCCGG GCTGCTGTGGTAAAAACAGTTCGGGATCGAGCTCGAGGCGAAGGGTTTTC AGAGATCTCAAGCCGACCCATGCGTGTTCCGGCGGATTCTCCACGGAATA GTGGTGGTCGTCATCGTGGTCTACGTCGACGACCTGCTGGTTGCTAGTGC AACGAAAGGGGACGAAGAGTAAGCGGTGAAGGACCTGTGCTCCTGTTTCC CCATCAAGGATCTAGGGGAGGCTTCATATTACCTGGGATGCTACATCACG CGGGACCGGAACGCCGGGACACTGAAGTTCGACCAGCATCAGTACATACA GACTGTGGCGGAACGTTTTGGCGTGACGAAGACCAGCATCGTCCCGTGTG TGGCAAAAGGAAAAGCCCTTTTGAAATCAGACAGCCCGCAAACGGACGTA GAGGCTGAAAAAATGCGCCAGATCCCCTCCCGAGAAATCGTTGGGGCCCT AATGTGGGCAGCGACGATGACCAGGCCCGACATTTCATTCACTGCACACC AACTGGCAAAATTCAACGACAACCCGGGACCGACACACTGGAGGGCATCC CGGAAAGCGCTGCAATATTTATGGCGCACTCGGGACGTCGGGATCACCTA CGGAGGGGAACCGGGGGGGGGGGGCAAGTTATCAGCGTGGATCGACGCAG ACTACGGTACATGCCCGGACACGCGTCGCTCAGTGTCGGGAGGGGTGGTG ATGATGGCTGACGGGGCCATCAGTTGGTTCTCACGAGTGCAAAAGGTAAC GGCGGCGGCGTCGTCCGAATCGGAATACATTGCGCTGGCTGAGATGGTAA ACGAGTTGCGTTTCCTACGACAGGTCAAGGAGTTCATGACCCCCCCAATC GACGCCGCCATCAAGATACACGAGGACAACGAAGACGCAATCAAGATGGC GAAAAACCGCTTCAGCAGTCACCGAACGAGGCACGTTGACATCAAGCACC ACATTGTCCGCGACGCGATCGATGGGGGGGTGGTTCACATAGAATACGTT CGGTCCGGGGAACAGCACGCCGACATCCTCACAAAGTCCGTA
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Coding sequence (CDS) from alignment at H-elongata_contig86144:183..1574-

>mRNA_H-elongata_contig86144.16191.1 ID=mRNA_H-elongata_contig86144.16191.1|Name=mRNA_H-elongata_contig86144.16191.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1260bp|location=Sequence derived from alignment at H-elongata_contig86144:183..1574- (Himanthalia elongata Himel1 dioecious)
ATGCGCCAGATCCCCTCCCGAGAAATCGTTGGGGCCCTAATGTGGGCAGC
GACGATGACCAGGCCCGACATTTCATTCACTGCACACCAACTGGCAAAAT
TCAACGACAACCCGGGACCGACACACTGGAGGGCATCCCGGAAAGCGCTG
CAATATTTATGGCGCACTCGGGACGTCGGGATCACCTACGGAGGGGAACC
GGGGGGGGGGGGCAAGTTATCAGCGTGGATCGACGCAGACTACGGTACAT
GCCCGGACACGCGTCGCTCAGTGTCGGGAGGGGTGGTGATGATGGCTGAC
GGGGCCATCAGTTGGTTCTCACGAGTGCAAAAGGTAACGGCGGCGGCGTC
GTCCGAATCGGAATACATTGCGCTGGCTGAGATGGTAAACGAGTTGCGTT
TCCTACGACAGGTCAAGGAGTTCATGACCCCCCCAATCGACGCCGCCATC
AAGATACACGAGGACAACGAAGACGCAATCAAGATGGCGAAAAACCGCTT
CAGCAGTCACCGAACGAGGCACGTTGACATCAAGCACCACATTGTCCGCG
ACGCGATCGATGGGGGGGTGGTTCACATAGAATACGTTCGGTCCGGGGAA
CAGCACGCCGACATCCTCACAAAGTCCGTAATGCGCCAGATCCCCTCCCG
AGAAATCGTTGGGGCCCTAATGTGGGCAGCGACGATGACCAGGCCCGACA
TTTCATTCACTGCACACCAACTGGCAAAATTCAACGACAACCCGGGACCG
ACACACTGGAGGGCATCCCGGAAAGCGCTGCAATATTTATGGCGCACTCG
GGACGTCGGGATCACCTACGGAGGGGAACCGGGGGGGGGGGGCAAGTTAT
CAGCGTGGATCGACGCAGACTACGGTACATGCCCGGACACGCGTCGCTCA
GTGTCGGGAGGGGTGGTGATGATGGCTGACGGGGCCATCAGTTGGTTCTC
ACGAGTGCAAAAGGTAACGGCGGCGGCGTCGTCCGAATCGGAATACATTG
CGCTGGCTGAGATGGTAAACGAGTTGCGTTTCCTACGACAGGTCAAGGAG
TTCATGACCCCCCCAATCGACGCCGCCATCAAGATACACGAGGACAACGA
AGACGCAATCAAGATGGCGAAAAACCGCTTCAGCAGTCACCGAACGAGGC
ACGTTGACATCAAGCACCACATTGTCCGCGACGCGATCGATGGGGGGGTG
GTTCACATAGAATACGTTCGGTCCGGGGAACAGCACGCCGACATCCTCAC
AAAGTCCGTA
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