mRNA_H-elongata_contig85835.16164.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig85835.16164.1
Unique NamemRNA_H-elongata_contig85835.16164.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig85835.16164.1 vs. uniprot
Match: D8LEZ3_ECTSI (Vac14_Fig4_bd domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEZ3_ECTSI)

HSP 1 Score: 338 bits (867), Expect = 1.380e-109
Identity = 181/199 (90.95%), Postives = 192/199 (96.48%), Query Frame = 1
Query:    1 QVLARVSLNEEHFNHVLEEILQLFSQKRRLLETRGGLIIRKLCVLLQPKTIYVALASVLQANSDLDFIGVMVEALNLILLTASELEELRQALKLSTKSDAAAEDRDLFASLFACWCHNPVATFSLCLLAQAYDVSAELVKEVAEVEITVGFLMQVDKLVQLLESPIFLHLRLQLLDVDSPSYPALLKSLYGILMLLPQA 597
            QVLAR+SLNEE FNHVLEEILQLFS +RRLLETRGGLIIRKLCVLLQPKTIYVA+ASVLQ NSDL+FIGVMVEALNLILLTA ELEELRQAL+LST+SDA+ EDR+LFA+LFACWCHNPVATFSLCLLAQAYDVSAELVKEVAEVEITVGFLMQVDKLVQL+ESPIFL LRLQLLDVDSPSYP LLKSLYGILMLLPQ+
Sbjct:  408 QVLARISLNEEQFNHVLEEILQLFSDQRRLLETRGGLIIRKLCVLLQPKTIYVAVASVLQTNSDLEFIGVMVEALNLILLTAGELEELRQALRLSTRSDASPEDRELFAALFACWCHNPVATFSLCLLAQAYDVSAELVKEVAEVEITVGFLMQVDKLVQLIESPIFLRLRLQLLDVDSPSYPFLLKSLYGILMLLPQS 606          
BLAST of mRNA_H-elongata_contig85835.16164.1 vs. uniprot
Match: A0A835YJ67_9STRA (Vacuolar protein 14 C-terminal Fig4p binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ67_9STRA)

HSP 1 Score: 261 bits (666), Expect = 2.920e-80
Identity = 133/199 (66.83%), Postives = 171/199 (85.93%), Query Frame = 1
Query:    1 QVLARVSLNEEHFNHVLEEILQLFSQKRRLLETRGGLIIRKLCVLLQPKTIYVALASVLQANSDLDFIGVMVEALNLILLTASELEELRQALKLSTKSDAAAEDRDLFASLFACWCHNPVATFSLCLLAQAYDVSAELVKEVAEVEITVGFLMQVDKLVQLLESPIFLHLRLQLLDVDSPSYPALLKSLYGILMLLPQA 597
            QVLAR+ L +  F  VL  I+ +F++ RRLLE RG LI+RKLC+LL  ++IY+ALA+VL+  +DL F+ +MV++LNLILLTA+EL+E+R+ALK S + +AA ED  +FASLF+CWCH+PV+TFSLCLLA+AYD+SA +V E ++VE+TVGFLMQVDKLVQLLESPIFLHLRLQLLDV +PSYPAL+KSLYG+LMLLPQ+
Sbjct:  412 QVLARIGLAQSEFQRVLNSIMDVFTEDRRLLEVRGSLIVRKLCLLLNARSIYMALAAVLEGKTDLQFVSLMVQSLNLILLTAAELDEVRRALKASFQPNAAPEDTQVFASLFSCWCHSPVSTFSLCLLAKAYDLSAAVVSEFSDVEVTVGFLMQVDKLVQLLESPIFLHLRLQLLDVSAPSYPALVKSLYGLLMLLPQS 610          
BLAST of mRNA_H-elongata_contig85835.16164.1 vs. uniprot
Match: A0A7S2F1M7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F1M7_9STRA)

HSP 1 Score: 249 bits (635), Expect = 2.310e-79
Identity = 137/201 (68.16%), Postives = 165/201 (82.09%), Query Frame = 1
Query:    1 QVLARVSLNEEHFNHVLEEILQLFSQKRRLLETRGGLIIRKLCVLLQPKTIYVALASVLQ--ANSDLDFIGVMVEALNLILLTASELEELRQALKLSTKSDAAAEDRDLFASLFACWCHNPVATFSLCLLAQAYDVSAELVKEVAEVEITVGFLMQVDKLVQLLESPIFLHLRLQLLDVDSPSYPALLKSLYGILMLLPQA 597
            +VLAR+SL+E  F  VL  I+ LFS  RRLLETRG LIIRKLCVLL  K+IY++LA VL+  + SDL+F  +MV+ LNLILLTA EL  LRQ LK S ++ A+ +DR +FASLF CW HNPVAT SLCLLAQAYD+++ LVK+ AEVEITVGFLMQ+DKLVQLLESPIF+ LRLQLL+VD+  +PALLKSLYG+LMLLPQ+
Sbjct:   11 KVLARISLHEVEFQRVLNAIVSLFSSDRRLLETRGSLIIRKLCVLLNAKSIYISLADVLKKTSTSDLEFASIMVQTLNLILLTALELSGLRQVLKNSFQTSASTDDRTVFASLFHCWSHNPVATLSLCLLAQAYDLASSLVKKFAEVEITVGFLMQIDKLVQLLESPIFIQLRLQLLEVDASYHPALLKSLYGLLMLLPQS 211          
BLAST of mRNA_H-elongata_contig85835.16164.1 vs. uniprot
Match: A0A7S2G2H9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G2H9_9STRA)

HSP 1 Score: 244 bits (622), Expect = 6.560e-78
Identity = 132/199 (66.33%), Postives = 162/199 (81.41%), Query Frame = 1
Query:    1 QVLARVSLNEEHFNHVLEEILQLFSQKRRLLETRGGLIIRKLCVLLQPKTIYVALASVLQANSDLDFIGVMVEALNLILLTASELEELRQALKLSTKSDAAAEDRDLFASLFACWCHNPVATFSLCLLAQAYDVSAELVKEVAEVEITVGFLMQVDKLVQLLESPIFLHLRLQLLDVDSPSYPALLKSLYGILMLLPQA 597
            +VLAR+SL+E  F  VL  I++LF   RRLLETRG LIIRKLCVLL  K+IY++LA+VL+   DL+F  +MV+ LNLILLTA EL  LR  LK S +  A++EDR +F +LF CW HNPVAT SLCLLAQAY +++ LV++ AEVEITVGFLMQ+DKLVQLLESPIF+ LRLQLL+VD+P +PALLKSLYG+LMLLPQ+
Sbjct:   10 KVLARISLHEVEFQRVLNAIVELFLTDRRLLETRGSLIIRKLCVLLNAKSIYISLAAVLRKTPDLEFASIMVQTLNLILLTALELTGLRHILKSSFQESASSEDRAVFTALFNCWSHNPVATLSLCLLAQAYGLASALVQKFAEVEITVGFLMQIDKLVQLLESPIFIQLRLQLLEVDAPYHPALLKSLYGLLMLLPQS 208          
BLAST of mRNA_H-elongata_contig85835.16164.1 vs. uniprot
Match: A0A482RXD2_9ARCH (Vac14_Fig4_bd domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RXD2_9ARCH)

HSP 1 Score: 230 bits (587), Expect = 3.290e-71
Identity = 123/201 (61.19%), Postives = 160/201 (79.60%), Query Frame = 1
Query:    1 QVLARVSLNEEHFNHVLEEILQLFSQKRRLLETRGGLIIRKLCVLLQPKTIYVALASVLQANSDLDFIGVMVEALNLILLTASELEELRQALKLSTKSDAAAEDRDLFASLFACWCHNPVATFSLCLLAQAYDVSAELVKEVAEVEITVGFLMQVDKLVQLLESPIFLHLRLQLLDVDSPSYPALLKSLYGILMLLPQARS 603
            QVLAR+SL+E  FN VL  I+QLF + R LLETRG L+IRKLC LL   +IY+A+A VL   +DL+FI +MV+ LNLILLTA EL  LR++L+ S +++A  +D+  F SLF CW +N VATFSLCLLAQAYD+SA+L+++ AE ++TVGFLMQ+DKLVQLLESPIF+ LRL LL+ DS  +  LL+SLYG+LMLLPQ+++
Sbjct:  179 QVLARISLDEVQFNRVLNSIVQLFYEDRALLETRGALVIRKLCSLLDSCSIYLAMAKVLNGKTDLEFISLMVQTLNLILLTAPELTPLRKSLQRSFQTNATEKDKTTFQSLFMCWTNNAVATFSLCLLAQAYDISAQLIQKFAEADVTVGFLMQIDKLVQLLESPIFIQLRLHLLETDSAYHTDLLRSLYGLLMLLPQSQA 379          
BLAST of mRNA_H-elongata_contig85835.16164.1 vs. uniprot
Match: A0A7S1C269_9STRA (Hypothetical protein (Fragment) n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1C269_9STRA)

HSP 1 Score: 235 bits (599), Expect = 1.500e-68
Identity = 126/201 (62.69%), Postives = 156/201 (77.61%), Query Frame = 1
Query:    1 QVLARVSLNEEHFNHVLEEILQLFSQKRRLLETRGGLIIRKLCVLLQPKTIYVALASVL--QANSDLDFIGVMVEALNLILLTASELEELRQALKLSTKSDAAAEDRDLFASLFACWCHNPVATFSLCLLAQAYDVSAELVKEVAEVEITVGFLMQVDKLVQLLESPIFLHLRLQLLDVDSPSYPALLKSLYGILMLLPQA 597
            QVL+R+SL +  F  VL  IL LFS  RRLLETRG LI+RKLCVLL  K++Y+ +A +L    N  L+FI  MV+ LNLILL+A+EL ELR  LK S + +A  + RD FASLF CWCHNPVATFS CLLAQAYDV+  LVK+  E+E++V FLMQ+DKLVQ++ESPIF+H+RLQLLDV+ P +  LLK+LYGILMLLPQ+
Sbjct:  687 QVLSRISLQKHEFQLVLNHILGLFSNDRRLLETRGSLIVRKLCVLLNAKSVYIRMADILGRSKNFSLEFISTMVQTLNLILLSAAELHELRSLLKESFQKNAPFQARDTFASLFPCWCHNPVATFSFCLLAQAYDVAFALVKKFTELEVSVSFLMQIDKLVQIMESPIFVHVRLQLLDVEEPHHSPLLKALYGILMLLPQS 887          
BLAST of mRNA_H-elongata_contig85835.16164.1 vs. uniprot
Match: A0A7R9Y8C4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y8C4_9STRA)

HSP 1 Score: 226 bits (577), Expect = 3.960e-67
Identity = 119/199 (59.80%), Postives = 156/199 (78.39%), Query Frame = 1
Query:    1 QVLARVSLNEEHFNHVLEEILQLFSQKRRLLETRGGLIIRKLCVLLQPKTIYVALASVLQANSDLDFIGVMVEALNLILLTASELEELRQALKLSTKSDAAAEDRDLFASLFACWCHNPVATFSLCLLAQAYDVSAELVKEVAEVEITVGFLMQVDKLVQLLESPIFLHLRLQLLDVDSPSYPALLKSLYGILMLLPQA 597
            +VLA++S  E  F+ VL  ++ LF ++ RLLE RG +IIR+ CV+L  K+IY+ LA+VLQ + DL+F+ +++  LNLILLTA EL++LR  LK S + +A AE R++F  LF CW HNPVAT SLC LAQAYD++ ELVK  A+V+ITVGFLMQ DKLVQLLESPIF+ LRLQLL+ D P YP+L+K+LYG+LMLLPQ+
Sbjct:  404 EVLAKISSAEAEFHRVLTSVVDLFGKEPRLLEGRGSVIIRRFCVMLDSKSIYLLLATVLQQHRDLEFVSLLIHTLNLILLTAHELQDLRDILKRSFQPNATAEVRNVFDQLFRCWSHNPVATLSLCFLAQAYDLAFELVKRFAKVDITVGFLMQADKLVQLLESPIFVPLRLQLLETDHPQYPSLVKALYGLLMLLPQS 602          
BLAST of mRNA_H-elongata_contig85835.16164.1 vs. uniprot
Match: A0A812QKX0_SYMMI (Vac14 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812QKX0_SYMMI)

HSP 1 Score: 216 bits (549), Expect = 5.580e-67
Identity = 119/200 (59.50%), Postives = 152/200 (76.00%), Query Frame = 1
Query:    4 VLARVSLNEEHFNHVLEEILQLFSQKRRLLETRGGLIIRKLCVLLQPKTIYVALASVLQANSDLDFIGVMVEALNLILLTASELEELRQALKLSTKSDAAAEDRDLFASLFACWCHNPVATFSLCLLAQAYDVSAELVKEVAEVEITVGFLMQVDKLVQLLESPIFLHLRLQLLDVDSPSYPALLKSLYGILMLLPQARS 603
            V+AR+ +NE+ F  VL  ++QLF + R LLETRG LIIRKLC LL  + IY +LAS++   SDL+F   +V+ LNLILLTA EL  LR+ L+       +  D D+F  LF CW HNPVATFSLCLL+Q YD+SA+LV + AEV++TVGFLMQ+DKLVQL+ESP+F+ LRLQLLDVDS  +  LLKSLYG+LMLLPQ+++
Sbjct:    1 VIARICINEQQFQRVLNALVQLFFEDRPLLETRGALIIRKLCALLDCQKIYRSLASIM-VKSDLEFCSTIVQTLNLILLTAPELSPLRKTLQDCVLQPQS--DEDIFTILFKCWSHNPVATFSLCLLSQTYDLSADLVHKFAEVDVTVGFLMQIDKLVQLIESPVFIRLRLQLLDVDSTFHADLLKSLYGLLMLLPQSQA 197          
BLAST of mRNA_H-elongata_contig85835.16164.1 vs. uniprot
Match: F0YQT7_AURAN (Vac14_Fig4_bd domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YQT7_AURAN)

HSP 1 Score: 218 bits (555), Expect = 6.950e-66
Identity = 127/226 (56.19%), Postives = 159/226 (70.35%), Query Frame = 1
Query:    1 QVLARVSL-NEEHFNHVLEEILQLFSQKRRLLETRGGLIIRKLCVLLQPKTIYVALASVLQA--------------------------NSDLDFIGVMVEALNLILLTASELEELRQALKLSTKSDAAAEDRDLFASLFACWCHNPVATFSLCLLAQAYDVSAELVKEVAEVEITVGFLMQVDKLVQLLESPIFLHLRLQLLDVDSPSYPALLKSLYGILMLLPQA 597
            QVLAR+SL ++  F  VL+ ILQLFS+ RRLLE RG LIIR LCVLL  K+IY++LA++LQ+                             LDF  +MV+ LNLILLTA EL+ELR  L+ S +S A+ E   +F +LF CWCHNPVAT +LCL+AQAY++S+ LV   A V+ITVGFLMQVDKLVQLLESP+F+ LRLQLL+V +  +P LLKSLYG+LMLLPQ+
Sbjct:  208 QVLARISLLSDAEFKRVLDAILQLFSEDRRLLELRGSLIIRNLCVLLNAKSIYISLATILQSPVHDYVAGSENLALVDVPAIPTIRLSEDQLDFRSIMVQTLNLILLTARELDELRLLLRSSLESGASKEATAVFVTLFGCWCHNPVATLALCLIAQAYELSSALVTLFANVDITVGFLMQVDKLVQLLESPVFIQLRLQLLEVHTSYHPFLLKSLYGLLMLLPQS 433          
BLAST of mRNA_H-elongata_contig85835.16164.1 vs. uniprot
Match: W2QV08_PHYPN (Vac14_Fig4_bd domain-containing protein n=6 Tax=Phytophthora parasitica TaxID=4792 RepID=W2QV08_PHYPN)

HSP 1 Score: 219 bits (558), Expect = 1.680e-65
Identity = 121/214 (56.54%), Postives = 159/214 (74.30%), Query Frame = 1
Query:    1 QVLARVSLNEEHFNHVLEEILQLFSQKRRLLETRGGLIIRKLCVLLQPKTIYVALASVL-------QANSDLDFIGVMVEALNLILLTASELEELRQALKLSTKSDAAAEDRDLFASLFACWCHNPVATFSLCLLAQAYDVSAELVKEVAEVEITVGFLMQVDKLVQLLESPIFLHLRLQLLDVDSPSYPALLKSLYGILMLLPQARSGVWRVL 621
            +VLAR+SLN+  F  VL  IL LF+Q RRLLE RG +I+RKLCVLL  K+IY+  A VL        + +D +F  VMV+ LNLILLTA+ELE LR  L+ S +S A+ +D ++F +LF  WCHNP+A FSLCLLAQ+Y +SA L+ + A+++ +VGFLMQ+DKLVQLLESPIF+H+RLQLL++    +  L+KSLYG+LMLLPQ  S  +RVL
Sbjct:  229 EVLARISLNKVEFEKVLNAILLLFAQDRRLLEMRGSMIVRKLCVLLDSKSIYLIFAKVLGTEAVYLDSQADSEFAAVMVQTLNLILLTANELEHLRDILRRSFQSRASEDDVEVFTALFRSWCHNPIAAFSLCLLAQSYSLSAALISKFADIDASVGFLMQIDKLVQLLESPIFIHMRLQLLEIQEDYHTDLVKSLYGLLMLLPQ--SAAFRVL 440          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85835.16164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEZ3_ECTSI1.380e-10990.95Vac14_Fig4_bd domain-containing protein n=2 Tax=Ec... [more]
A0A835YJ67_9STRA2.920e-8066.83Vacuolar protein 14 C-terminal Fig4p binding-domai... [more]
A0A7S2F1M7_9STRA2.310e-7968.16Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2G2H9_9STRA6.560e-7866.33Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A482RXD2_9ARCH3.290e-7161.19Vac14_Fig4_bd domain-containing protein (Fragment)... [more]
A0A7S1C269_9STRA1.500e-6862.69Hypothetical protein (Fragment) n=2 Tax=Corethron ... [more]
A0A7R9Y8C4_9STRA3.960e-6759.80Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A812QKX0_SYMMI5.580e-6759.50Vac14 protein n=1 Tax=Symbiodinium microadriaticum... [more]
F0YQT7_AURAN6.950e-6656.19Vac14_Fig4_bd domain-containing protein (Fragment)... [more]
W2QV08_PHYPN1.680e-6556.54Vac14_Fig4_bd domain-containing protein n=6 Tax=Ph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig85835contigH-elongata_contig85835:327..2257 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score339.3
Seed ortholog evalue1.2e-90
Seed eggNOG ortholog2880.D8LEZ3
Preferred nameVAC14
KEGG koko:K10875,ko:K15305
KEGG Pathwayko03440,ko05166,ko05203,map03440,map05166,map05203
GOsGO:0000139,GO:0000306,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005774,GO:0005794,GO:0005942,GO:0006629,GO:0006644,GO:0006650,GO:0006661,GO:0006793,GO:0006796,GO:0006950,GO:0006970,GO:0007154,GO:0007165,GO:0007267,GO:0008047,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009628,GO:0009893,GO:0009987,GO:0010008,GO:0010562,GO:0012505,GO:0016020,GO:0019207,GO:0019209,GO:0019220,GO:0019222,GO:0019637,GO:0019898,GO:0023052,GO:0030154,GO:0030234,GO:0030674,GO:0031090,GO:0031312,GO:0031323,GO:0031325,GO:0031410,GO:0031901,GO:0031902,GO:0031982,GO:0031984,GO:0032502,GO:0032991,GO:0033674,GO:0035032,GO:0038023,GO:0042325,GO:0042327,GO:0043085,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0045165,GO:0045168,GO:0045937,GO:0046331,GO:0046474,GO:0046486,GO:0046488,GO:0048518,GO:0048522,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051174,GO:0051338,GO:0051347,GO:0051716,GO:0060089,GO:0060090,GO:0061695,GO:0065007,GO:0065009,GO:0070772,GO:0071704,GO:0090407,GO:0097708,GO:0098588,GO:0098772,GO:0098791,GO:0098796,GO:0098805,GO:0098852,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.phosphatidylinositol biosynthetic process
EggNOG OGsKOG0212@1,KOG0212@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionVacuole morphology and inheritance protein 14
Ec32 orthologEc-21_006110.1
Exons4
Model size621
Cds size621
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig85835.16164.1prot_H-elongata_contig85835.16164.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig85835 327..2257 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931261.7573307-CDS-H-elongata_contig85835:326..4851622931261.7573307-CDS-H-elongata_contig85835:326..485Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85835 327..485 -
1691679764.1591263-CDS-H-elongata_contig85835:326..4851691679764.1591263-CDS-H-elongata_contig85835:326..485Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85835 327..485 -
1622931261.77762-CDS-H-elongata_contig85835:802..10451622931261.77762-CDS-H-elongata_contig85835:802..1045Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85835 803..1045 -
1691679764.1771555-CDS-H-elongata_contig85835:802..10451691679764.1771555-CDS-H-elongata_contig85835:802..1045Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85835 803..1045 -
1622931261.7987144-CDS-H-elongata_contig85835:1693..18291622931261.7987144-CDS-H-elongata_contig85835:1693..1829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85835 1694..1829 -
1691679764.1902213-CDS-H-elongata_contig85835:1693..18291691679764.1902213-CDS-H-elongata_contig85835:1693..1829Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85835 1694..1829 -
1622931261.8107052-CDS-H-elongata_contig85835:2174..22571622931261.8107052-CDS-H-elongata_contig85835:2174..2257Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85835 2175..2257 -
1691679764.2006369-CDS-H-elongata_contig85835:2174..22571691679764.2006369-CDS-H-elongata_contig85835:2174..2257Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85835 2175..2257 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig85835.16164.1

>prot_H-elongata_contig85835.16164.1 ID=prot_H-elongata_contig85835.16164.1|Name=mRNA_H-elongata_contig85835.16164.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=207bp
QVLARVSLNEEHFNHVLEEILQLFSQKRRLLETRGGLIIRKLCVLLQPKT
IYVALASVLQANSDLDFIGVMVEALNLILLTASELEELRQALKLSTKSDA
AAEDRDLFASLFACWCHNPVATFSLCLLAQAYDVSAELVKEVAEVEITVG
FLMQVDKLVQLLESPIFLHLRLQLLDVDSPSYPALLKSLYGILMLLPQAR
SGVWRVL
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mRNA from alignment at H-elongata_contig85835:327..2257-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig85835.16164.1 ID=mRNA_H-elongata_contig85835.16164.1|Name=mRNA_H-elongata_contig85835.16164.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1931bp|location=Sequence derived from alignment at H-elongata_contig85835:327..2257- (Himanthalia elongata Himel1 dioecious)
CAGGTTCTGGCGCGAGTCTCTCTGAACGAAGAACACTTCAACCACGTTTT GGAGGAGATCTTGCAGCTTTTTTCGCAAAAGCGGTGAGCACCGTCTCTCC GTCCGGGGCGGCGTGTACAGCGCCTGTCTGGTGACGCTTCTCGGAACGTG GGGCAACGGTACCCTTTCTCGTCTGTTTGTCTCTTCGACAAAAACGCCTC GAGTGTTTTGATTGTGTGTGTGAGGGGTTACATGAGAGATCTGATCTAGA GACATTACATCCCAGTAACATATATTTTGGCCATCCTTTTGTCGACAAAA GGGCCAAAAAAAAGGCGAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG GGCGGCAGCGGACCCTTTCTCTATTCGAACATTTATTCTTAAAAATCGGT CCGGCGCTTCGACGACATCTCTCGACAGGCGACTGCTGGAAACCCGGGGG GGTCTGATCATCCGCAAGCTTTGCGTGCTGCTGCAGCCCAAGACTATCTA CGTGGCCCTGGCGTCTGTTCTTCAGGCCAACAGCGACTTGGATTTCATCG GTGTTATGGTTGAGGTGCGGCAGTGCAGTGAGCGCGGCCTGGCCCTGGCC GGGCGAGGCTAGAGGCGAACGTGTTGTTGCTTGAACTGTAGATTGCGGAC GGTGCTATAAATTGTTTTTAGAGAACGCTTTTTCTCGTTAAGGCTTAAGG CTTGTGGTGGACGACGTGAAGCGCAAGAATCAAATCAAAGCCGCGATGAC GTTGCGTAGAACACTTGCGGCGTGCGTGTGGATGGGTGCGGTGCGTGCGT GCGTGTGTTCGTTGGTGTTTCTCTATCTGAAGTCTAGAATTCTCAGCCAG ACTTGTTTTTCCTCCTAGCTGATTGTTGAGGTGGGCTCCACGAAATCCTC CTTTTTTTTTCTCATAAGAAGGGGTTGTTGGCAATTTCTGCATTTTGAGG ACACCGCTTAATTATTAAAAAACATCGAAATGAAGATCGAGCAAAGAAAA AAGGTAGGGATGGGGGTTGAAGCGGGGGGAGGGTGGATGGCAAACAAGGG GATAACTTATAGTGCAGGCTATAATCAAGAGGGTTGAGGGTTGATTTGCT GTGCGCAGGCACGCGTTTGTCCCGTCAAGGCACACGACCCGGCCTTCCTC CTGCCTTTGAAAGCTCGAGACAAAGAACCGGTCTCGGTCGGATCTAACGC CCCCCCAACCAGGCACTCAACCTGATCCTGCTGACGGCGTCGGAGCTGGA AGAGCTGCGGCAGGCGCTGAAGCTCTCCACCAAGAGTGACGCTGCGGCGG AGGACCGAGACCTCTTCGCCAGCCTCTTCGCGTGTTGGTGCCACAATCCC GTGGCCACCTTTAGCCTGTGCCTGCTCGCGCAGGCGTACGACGTGTCCGC GGAGCTGGTGAAGGAGGTGGCGGAGGTTGAGATCACGGTCGGCTTCCTCA TGCAGGTCCGTACGTCCGTCCCGCTGCGCTTGTTTCGCCTTGTTCGCGCG CTGCCCGCAAGGTTTGCTGTCTCGATGTGTAAATTGTGTATCTGACGGAA AAAATAATTTGATCGTTTGGATTTTTTTTGCGGCAGGACACAGAAAAAAA ATATATATATATCGCACCAAAAAAAAATAGCATCGTGATTTTTTTTTAGG CGTGACGTCGATGCCAACGGTGTTTCCCTGCTCTTGCGAGGTTTTGCTCC TTATGTTGCCCCCGCCGCCGTTTCCGCCTCTTGTCTTACGACAAATCATG TTCCCGGCTCTGATCTGGGCAGGTTGACAAGCTCGTGCAGCTTCTCGAGT CGCCGATATTTTTGCACCTCCGGTTGCAGCTGTTGGACGTGGACTCGCCG TCGTACCCTGCCCTTCTCAAAAGCCTGTACGGGATACTCATGCTTCTACC ACAGGCGCGTTCGGGCGTTTGGCGTGTTTTA
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Coding sequence (CDS) from alignment at H-elongata_contig85835:327..2257-

>mRNA_H-elongata_contig85835.16164.1 ID=mRNA_H-elongata_contig85835.16164.1|Name=mRNA_H-elongata_contig85835.16164.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1242bp|location=Sequence derived from alignment at H-elongata_contig85835:327..2257- (Himanthalia elongata Himel1 dioecious)
CAGGTTCTGGCGCGAGTCTCTCTGAACGAAGAACACTTCAACCACGTTTT
GGAGGAGATCTTGCAGCTTTTTTCGCAAAAGCGCAGGTTCTGGCGCGAGT
CTCTCTGAACGAAGAACACTTCAACCACGTTTTGGAGGAGATCTTGCAGC
TTTTTTCGCAAAAGCGGCGACTGCTGGAAACCCGGGGGGGTCTGATCATC
CGCAAGCTTTGCGTGCTGCTGCAGCCCAAGACTATCTACGTGGCCCTGGC
GTCTGTTCTTCAGGCCAACAGCGACTTGGATTTCATCGGTGTTATGGTTG
AGGCGACTGCTGGAAACCCGGGGGGGTCTGATCATCCGCAAGCTTTGCGT
GCTGCTGCAGCCCAAGACTATCTACGTGGCCCTGGCGTCTGTTCTTCAGG
CCAACAGCGACTTGGATTTCATCGGTGTTATGGTTGAGGCACTCAACCTG
ATCCTGCTGACGGCGTCGGAGCTGGAAGAGCTGCGGCAGGCGCTGAAGCT
CTCCACCAAGAGTGACGCTGCGGCGGAGGACCGAGACCTCTTCGCCAGCC
TCTTCGCGTGTTGGTGCCACAATCCCGTGGCCACCTTTAGCCTGTGCCTG
CTCGCGCAGGCGTACGACGTGTCCGCGGAGCTGGTGAAGGAGGTGGCGGA
GGTTGAGATCACGGTCGGCTTCCTCATGCAGGCACTCAACCTGATCCTGC
TGACGGCGTCGGAGCTGGAAGAGCTGCGGCAGGCGCTGAAGCTCTCCACC
AAGAGTGACGCTGCGGCGGAGGACCGAGACCTCTTCGCCAGCCTCTTCGC
GTGTTGGTGCCACAATCCCGTGGCCACCTTTAGCCTGTGCCTGCTCGCGC
AGGCGTACGACGTGTCCGCGGAGCTGGTGAAGGAGGTGGCGGAGGTTGAG
ATCACGGTCGGCTTCCTCATGCAGGTTGACAAGCTCGTGCAGCTTCTCGA
GTCGCCGATATTTTTGCACCTCCGGTTGCAGCTGTTGGACGTGGACTCGC
CGTCGTACCCTGCCCTTCTCAAAAGCCTGTACGGGATACTCATGCTTCTA
CCACAGGCGCGTTCGGGCGTTTGGCGTGTTTTAGTTGACAAGCTCGTGCA
GCTTCTCGAGTCGCCGATATTTTTGCACCTCCGGTTGCAGCTGTTGGACG
TGGACTCGCCGTCGTACCCTGCCCTTCTCAAAAGCCTGTACGGGATACTC
ATGCTTCTACCACAGGCGCGTTCGGGCGTTTGGCGTGTTTTA
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