mRNA_H-elongata_contig85604.16147.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig85604.16147.1
Unique NamemRNA_H-elongata_contig85604.16147.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig85604.16147.1 vs. uniprot
Match: A0A6H5JF91_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JF91_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 1.440e-57
Identity = 86/103 (83.50%), Postives = 94/103 (91.26%), Query Frame = 1
Query:   10 VRDRHYDTGALLLGLGTFAAIEGPVNTFLRAQKLFPGPHLYVGAGCVVAWAVSASLVPQMQKGNEVARTAHIVINFGMIGLFAWQIWTGIPIAQKVWEFTKFP 318
            VRD HYD GALLLGLGTFAA+EGPVNT+LRAQKLFPGPHLY GA  VVAWAV+ASLVP+MQKG++ AR AH+ INFGMI LFAWQI+TGIPIAQKVWEFTKFP
Sbjct:  244 VRDLHYDAGALLLGLGTFAAVEGPVNTYLRAQKLFPGPHLYAGAAVVVAWAVAASLVPKMQKGDDTARIAHMAINFGMIALFAWQIFTGIPIAQKVWEFTKFP 346          
BLAST of mRNA_H-elongata_contig85604.16147.1 vs. uniprot
Match: A0A835YJX9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJX9_9STRA)

HSP 1 Score: 164 bits (416), Expect = 1.410e-48
Identity = 74/103 (71.84%), Postives = 87/103 (84.47%), Query Frame = 1
Query:   10 VRDRHYDTGALLLGLGTFAAIEGPVNTFLRAQKLFPGPHLYVGAGCVVAWAVSASLVPQMQKGNEVARTAHIVINFGMIGLFAWQIWTGIPIAQKVWEFTKFP 318
            VRD+HY+ G+L+LGLG FAAIEGPVNT++RA KLFPGPHLY GAG VVAW ++ASLV QMQKGNE AR AHI INFG++G FAWQ+ TG+ I  KV EFTK+P
Sbjct:  175 VRDKHYEVGSLILGLGVFAAIEGPVNTYIRAGKLFPGPHLYAGAGIVVAWGIAASLVQQMQKGNEWARLAHIGINFGILGFFAWQVNTGLGITAKVLEFTKWP 277          
BLAST of mRNA_H-elongata_contig85604.16147.1 vs. uniprot
Match: A0A0M0JWP2_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JWP2_9EUKA)

HSP 1 Score: 150 bits (380), Expect = 3.280e-43
Identity = 69/105 (65.71%), Postives = 80/105 (76.19%), Query Frame = 1
Query:    4 GQVRDRHYDTGALLLGLGTFAAIEGPVNTFLRAQKLFPGPHLYVGAGCVVAWAVSASLVPQMQKGNEVARTAHIVINFGMIGLFAWQIWTGIPIAQKVWEFTKFP 318
            G  R+ HY  G+++LGLGT  AIEGPVNTFLRAQKLFPGPHLY GAG VV WA++ASLVP M KGN+ AR +HI  N   +GLF WQ+ TG  I QKV +FTKFP
Sbjct:  168 GSFRETHYQVGSVVLGLGTAFAIEGPVNTFLRAQKLFPGPHLYAGAGVVVCWAMAASLVPLMTKGNDAARNSHIAFNVLALGLFTWQLPTGWEITQKVIQFTKFP 272          
BLAST of mRNA_H-elongata_contig85604.16147.1 vs. uniprot
Match: A0A7S2PXB9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PXB9_9STRA)

HSP 1 Score: 145 bits (365), Expect = 7.970e-43
Identity = 66/102 (64.71%), Postives = 78/102 (76.47%), Query Frame = 1
Query:   13 RDRHYDTGALLLGLGTFAAIEGPVNTFLRAQKLFPGPHLYVGAGCVVAWAVSASLVPQMQKGNEVARTAHIVINFGMIGLFAWQIWTGIPIAQKVWEFTKFP 318
            RD+H+  GALL  +GT  AIEGP+NT+ RA KLFPGPHLY GAG VV WA++AS+VP MQKGN+ ART HI  N   IGLF WQ+ +GIPI  KV EFTK+P
Sbjct:   21 RDKHFSQGALLAFIGTAFAIEGPLNTYARAGKLFPGPHLYAGAGLVVLWALAASMVPAMQKGNDAARTVHIGANLAGIGLFGWQVTSGIPILLKVVEFTKWP 122          
BLAST of mRNA_H-elongata_contig85604.16147.1 vs. uniprot
Match: A0A7S0L7U3_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L7U3_9EUKA)

HSP 1 Score: 149 bits (377), Expect = 2.300e-42
Identity = 68/103 (66.02%), Postives = 81/103 (78.64%), Query Frame = 1
Query:   10 VRDRHYDTGALLLGLGTFAAIEGPVNTFLRAQKLFPGPHLYVGAGCVVAWAVSASLVPQMQKGNEVARTAHIVINFGMIGLFAWQIWTGIPIAQKVWEFTKFP 318
            +RD+HY  G+++LGLGT  AIEGPVNTF+RAQKLFPGPHLY GAG VV+WA++ASLVP M KG E AR AHI  N   +GLF WQ+ TG  I QKV +FT+FP
Sbjct:  206 LRDKHYQVGSVILGLGTSFAIEGPVNTFIRAQKLFPGPHLYAGAGVVVSWAMAASLVPLMSKGKESARAAHIAFNVLALGLFTWQLPTGWEITQKVIKFTQFP 308          
BLAST of mRNA_H-elongata_contig85604.16147.1 vs. uniprot
Match: A0A7S0P6S8_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0P6S8_9EUKA)

HSP 1 Score: 148 bits (374), Expect = 3.400e-42
Identity = 69/103 (66.99%), Postives = 80/103 (77.67%), Query Frame = 1
Query:   10 VRDRHYDTGALLLGLGTFAAIEGPVNTFLRAQKLFPGPHLYVGAGCVVAWAVSASLVPQMQKGNEVARTAHIVINFGMIGLFAWQIWTGIPIAQKVWEFTKFP 318
            +RD+HY  G+++LGLGT  AIEGPVNTFLRAQKLFPGPHLY GAG VV+WA++ASLVP M KG E AR AHI  N   +GLF WQ+ TG  I  KV +FTKFP
Sbjct:  180 LRDKHYQVGSVILGLGTSFAIEGPVNTFLRAQKLFPGPHLYAGAGVVVSWAMAASLVPLMSKGKESARIAHIAFNSLALGLFTWQLPTGWEITLKVIKFTKFP 282          
BLAST of mRNA_H-elongata_contig85604.16147.1 vs. uniprot
Match: K0SPQ1_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SPQ1_THAOC)

HSP 1 Score: 149 bits (375), Expect = 3.500e-42
Identity = 68/102 (66.67%), Postives = 82/102 (80.39%), Query Frame = 1
Query:   13 RDRHYDTGALLLGLGTFAAIEGPVNTFLRAQKLFPGPHLYVGAGCVVAWAVSASLVPQMQKGNEVARTAHIVINFGMIGLFAWQIWTGIPIAQKVWEFTKFP 318
            RD+H++ G+ LL LGTF AIEGP+NT+ RA KLFPGPHLY GAGCVV WA++AS VP MQKG++ ARTAHI  N   +GLFAWQI +GIPI  KV +FTK+P
Sbjct:  196 RDKHFNQGSTLLFLGTFFAIEGPLNTYARAGKLFPGPHLYAGAGCVVLWALAASCVPAMQKGDDTARTAHIGANILGLGLFAWQIQSGIPILLKVIQFTKWP 297          
BLAST of mRNA_H-elongata_contig85604.16147.1 vs. uniprot
Match: A0A7S3TGQ0_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TGQ0_9SPIT)

HSP 1 Score: 147 bits (372), Expect = 5.820e-42
Identity = 67/103 (65.05%), Postives = 80/103 (77.67%), Query Frame = 1
Query:   10 VRDRHYDTGALLLGLGTFAAIEGPVNTFLRAQKLFPGPHLYVGAGCVVAWAVSASLVPQMQKGNEVARTAHIVINFGMIGLFAWQIWTGIPIAQKVWEFTKFP 318
            +R++HY  G+++LGLGT  AIEGPVNTFLRAQKLFPGPHLY GAG VV WA++ASLVP MQKG + AR+ HI  N   + LF WQ+ TG  I QKV +FTKFP
Sbjct:  173 LREKHYQVGSVILGLGTAFAIEGPVNTFLRAQKLFPGPHLYAGAGVVVCWAMAASLVPLMQKGKDSARSEHIAFNAIAVALFTWQVPTGWEITQKVIQFTKFP 275          
BLAST of mRNA_H-elongata_contig85604.16147.1 vs. uniprot
Match: R1CWY1_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CWY1_EMIHU)

HSP 1 Score: 147 bits (371), Expect = 6.870e-42
Identity = 68/103 (66.02%), Postives = 79/103 (76.70%), Query Frame = 1
Query:   10 VRDRHYDTGALLLGLGTFAAIEGPVNTFLRAQKLFPGPHLYVGAGCVVAWAVSASLVPQMQKGNEVARTAHIVINFGMIGLFAWQIWTGIPIAQKVWEFTKFP 318
            +R +HY  G+++LGLGT  AIEGPVNTFLRAQKLFPGPHLY GAG VV WA++ASLVP M KG + ARTAHI  N   +GLF WQ+ TG  I  KV +FTKFP
Sbjct:  167 LRAKHYQVGSVILGLGTAFAIEGPVNTFLRAQKLFPGPHLYAGAGVVVCWAMAASLVPLMSKGKDAARTAHIAFNVLALGLFTWQLPTGWDITLKVIKFTKFP 269          
BLAST of mRNA_H-elongata_contig85604.16147.1 vs. uniprot
Match: I0Z2R7_COCSC (Uncharacterized protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z2R7_COCSC)

HSP 1 Score: 145 bits (365), Expect = 1.140e-41
Identity = 64/106 (60.38%), Postives = 78/106 (73.58%), Query Frame = 1
Query:    1 RGQVRDRHYDTGALLLGLGTFAAIEGPVNTFLRAQKLFPGPHLYVGAGCVVAWAVSASLVPQMQKGNEVARTAHIVINFGMIGLFAWQIWTGIPIAQKVWEFTKFP 318
            +G  RD+H++ G+LLLGLG   AIEGPVNT+LR  KLFPGPHLY GA  VV WA +++LVP MQKGN+ AR  HI +N   + LFAWQ+ TG  I QKVWEF  +P
Sbjct:  106 KGGYRDKHWNWGSLLLGLGVLIAIEGPVNTYLRTGKLFPGPHLYAGAAIVVLWASASALVPSMQKGNDTARNTHIALNTLNLALFAWQVPTGFEIVQKVWEFAPWP 211          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85604.16147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JF91_9PHAE1.440e-5783.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YJX9_9STRA1.410e-4871.84Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A0M0JWP2_9EUKA3.280e-4365.71Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
A0A7S2PXB9_9STRA7.970e-4364.71Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S0L7U3_9EUKA2.300e-4266.02Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A7S0P6S8_9EUKA3.400e-4266.99Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
K0SPQ1_THAOC3.500e-4266.67Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S3TGQ0_9SPIT5.820e-4265.05Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
R1CWY1_EMIHU6.870e-4266.02Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
I0Z2R7_COCSC1.140e-4160.38Uncharacterized protein n=1 Tax=Coccomyxa subellip... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig85604contigH-elongata_contig85604:677..1456 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score193.7
Seed ortholog evalue4.3e-47
Seed eggNOG ortholog2880.D7FR78
EggNOG free text desc.Protein of unknown function (DUF4079)
EggNOG OGs28KJR@1,2QT15@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size321
Cds size321
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931259.258232-CDS-H-elongata_contig85604:676..7331622931259.258232-CDS-H-elongata_contig85604:676..733Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85604 677..733 -
1691679763.224592-CDS-H-elongata_contig85604:676..7331691679763.224592-CDS-H-elongata_contig85604:676..733Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85604 677..733 -
1622931259.279664-CDS-H-elongata_contig85604:1192..14561622931259.279664-CDS-H-elongata_contig85604:1192..1456Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85604 1193..1456 -
1691679763.235974-CDS-H-elongata_contig85604:1192..14561691679763.235974-CDS-H-elongata_contig85604:1192..1456Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85604 1193..1456 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig85604.16147.1prot_H-elongata_contig85604.16147.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig85604 677..1456 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig85604.16147.1

>prot_H-elongata_contig85604.16147.1 ID=prot_H-elongata_contig85604.16147.1|Name=mRNA_H-elongata_contig85604.16147.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp
RGQVRDRHYDTGALLLGLGTFAAIEGPVNTFLRAQKLFPGPHLYVGAGCV
VAWAVSASLVPQMQKGNEVARTAHIVINFGMIGLFAWQIWTGIPIAQKVW
EFTKFP*
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mRNA from alignment at H-elongata_contig85604:677..1456-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig85604.16147.1 ID=mRNA_H-elongata_contig85604.16147.1|Name=mRNA_H-elongata_contig85604.16147.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=780bp|location=Sequence derived from alignment at H-elongata_contig85604:677..1456- (Himanthalia elongata Himel1 dioecious)
CGTGGCCAGGTGCGTGATCGTCACTACGACACGGGTGCGTTGCTCCTCGG GCTCGGCACCTTCGCCGCAATCGAGGGTCCCGTCAACACCTTCCTCAGGG CGCAGAAGCTCTTCCCCGGGCCGCATCTGTACGTCGGCGCCGGTTGCGTC GTGGCCTGGGCCGTGTCCGCCTCCCTCGTTCCGCAGATGCAGAAGGGCAA CGAAGTCGCGCGAACCGCGCACATCGTGATTAACTTCGGCATGATCGGGC TCTTCGCCTGGCAGGTATGAACGCGCGCGATTGGGCGAGTACTCGTTAGA TGACACGCTGGATAAGACATTATCAATAGGGAAATAACACTCCCCAGGGG ATAGATGAGAGGATGTCAGTCCCCACTCAATGTTATCGGCAACTACGCAG GCAGCGACGGTAAACGCTGCGGGTTTTCTTTCGAAAATCTTACAAGATAC ATTTCTCCACGGCCGACCCCGTTGGTGTTTGAAGTCATTTACTTATCTGA CGGTACTGGTGCGCTTCGTCTCCTCGTGGCTCGTCGCTGTTGCTGTGTGC CGGAGGTGTCAAGTTAAGGTATTTAATAGTATTCTCGTGTGGTGGAGAGA AACTCTGAACCACTCTGCCCCCTCTCTTTCGTGTATGTATGTGTGTGTGT GTGTGTGTTTATTAAATTATATGTGTGCGCGTACATGCTGTATGGTTTGT CATTTACTGACCCTCGACCGCAGATCTGGACCGGCATCCCCATAGCCCAG AAGGTTTGGGAGTTTACAAAGTTTCCATGA
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Coding sequence (CDS) from alignment at H-elongata_contig85604:677..1456-

>mRNA_H-elongata_contig85604.16147.1 ID=mRNA_H-elongata_contig85604.16147.1|Name=mRNA_H-elongata_contig85604.16147.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig85604:677..1456- (Himanthalia elongata Himel1 dioecious)
CGTGGCCAGGTGCGTGATCGTCACTACGACACGGGTGCGTTGCTCCTCGG
GCTCGGCACCTTCGCCGCAATCGAGGGTCCCGTCAACACCTTCCTCAGGG
CGCAGAAGCTCTTCCCCGGGCCGCATCTGTACGTCGGCGCCGGTTGCGTC
GTGGCCTGGGCCGTGTCCGCCTCCCTCGTTCCGCAGATGCAGAAGGGCAA
CGAAGTCGCGCGAACCGCGCACATCGTGATTAACTTCGGCATGATCGGGC
TCTTCGCCTGGCAGCGTGGCCAGGTGCGTGATCGTCACTACGACACGGGT
GCGTTGCTCCTCGGGCTCGGCACCTTCGCCGCAATCGAGGGTCCCGTCAA
CACCTTCCTCAGGGCGCAGAAGCTCTTCCCCGGGCCGCATCTGTACGTCG
GCGCCGGTTGCGTCGTGGCCTGGGCCGTGTCCGCCTCCCTCGTTCCGCAG
ATGCAGAAGGGCAACGAAGTCGCGCGAACCGCGCACATCGTGATTAACTT
CGGCATGATCGGGCTCTTCGCCTGGCAGATCTGGACCGGCATCCCCATAG
CCCAGAAGGTTTGGGAGTTTACAAAGTTTCCATGAATCTGGACCGGCATC
CCCATAGCCCAGAAGGTTTGGGAGTTTACAAAGTTTCCATGA
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