mRNA_H-elongata_contig85604.16147.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig85604.16147.1 vs. uniprot
Match: A0A6H5JF91_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JF91_9PHAE) HSP 1 Score: 189 bits (481), Expect = 1.440e-57 Identity = 86/103 (83.50%), Postives = 94/103 (91.26%), Query Frame = 1
Query: 10 VRDRHYDTGALLLGLGTFAAIEGPVNTFLRAQKLFPGPHLYVGAGCVVAWAVSASLVPQMQKGNEVARTAHIVINFGMIGLFAWQIWTGIPIAQKVWEFTKFP 318
VRD HYD GALLLGLGTFAA+EGPVNT+LRAQKLFPGPHLY GA VVAWAV+ASLVP+MQKG++ AR AH+ INFGMI LFAWQI+TGIPIAQKVWEFTKFP
Sbjct: 244 VRDLHYDAGALLLGLGTFAAVEGPVNTYLRAQKLFPGPHLYAGAAVVVAWAVAASLVPKMQKGDDTARIAHMAINFGMIALFAWQIFTGIPIAQKVWEFTKFP 346
BLAST of mRNA_H-elongata_contig85604.16147.1 vs. uniprot
Match: A0A835YJX9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJX9_9STRA) HSP 1 Score: 164 bits (416), Expect = 1.410e-48 Identity = 74/103 (71.84%), Postives = 87/103 (84.47%), Query Frame = 1
Query: 10 VRDRHYDTGALLLGLGTFAAIEGPVNTFLRAQKLFPGPHLYVGAGCVVAWAVSASLVPQMQKGNEVARTAHIVINFGMIGLFAWQIWTGIPIAQKVWEFTKFP 318
VRD+HY+ G+L+LGLG FAAIEGPVNT++RA KLFPGPHLY GAG VVAW ++ASLV QMQKGNE AR AHI INFG++G FAWQ+ TG+ I KV EFTK+P
Sbjct: 175 VRDKHYEVGSLILGLGVFAAIEGPVNTYIRAGKLFPGPHLYAGAGIVVAWGIAASLVQQMQKGNEWARLAHIGINFGILGFFAWQVNTGLGITAKVLEFTKWP 277
BLAST of mRNA_H-elongata_contig85604.16147.1 vs. uniprot
Match: A0A0M0JWP2_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JWP2_9EUKA) HSP 1 Score: 150 bits (380), Expect = 3.280e-43 Identity = 69/105 (65.71%), Postives = 80/105 (76.19%), Query Frame = 1
Query: 4 GQVRDRHYDTGALLLGLGTFAAIEGPVNTFLRAQKLFPGPHLYVGAGCVVAWAVSASLVPQMQKGNEVARTAHIVINFGMIGLFAWQIWTGIPIAQKVWEFTKFP 318
G R+ HY G+++LGLGT AIEGPVNTFLRAQKLFPGPHLY GAG VV WA++ASLVP M KGN+ AR +HI N +GLF WQ+ TG I QKV +FTKFP
Sbjct: 168 GSFRETHYQVGSVVLGLGTAFAIEGPVNTFLRAQKLFPGPHLYAGAGVVVCWAMAASLVPLMTKGNDAARNSHIAFNVLALGLFTWQLPTGWEITQKVIQFTKFP 272
BLAST of mRNA_H-elongata_contig85604.16147.1 vs. uniprot
Match: A0A7S2PXB9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PXB9_9STRA) HSP 1 Score: 145 bits (365), Expect = 7.970e-43 Identity = 66/102 (64.71%), Postives = 78/102 (76.47%), Query Frame = 1
Query: 13 RDRHYDTGALLLGLGTFAAIEGPVNTFLRAQKLFPGPHLYVGAGCVVAWAVSASLVPQMQKGNEVARTAHIVINFGMIGLFAWQIWTGIPIAQKVWEFTKFP 318
RD+H+ GALL +GT AIEGP+NT+ RA KLFPGPHLY GAG VV WA++AS+VP MQKGN+ ART HI N IGLF WQ+ +GIPI KV EFTK+P
Sbjct: 21 RDKHFSQGALLAFIGTAFAIEGPLNTYARAGKLFPGPHLYAGAGLVVLWALAASMVPAMQKGNDAARTVHIGANLAGIGLFGWQVTSGIPILLKVVEFTKWP 122
BLAST of mRNA_H-elongata_contig85604.16147.1 vs. uniprot
Match: A0A7S0L7U3_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L7U3_9EUKA) HSP 1 Score: 149 bits (377), Expect = 2.300e-42 Identity = 68/103 (66.02%), Postives = 81/103 (78.64%), Query Frame = 1
Query: 10 VRDRHYDTGALLLGLGTFAAIEGPVNTFLRAQKLFPGPHLYVGAGCVVAWAVSASLVPQMQKGNEVARTAHIVINFGMIGLFAWQIWTGIPIAQKVWEFTKFP 318
+RD+HY G+++LGLGT AIEGPVNTF+RAQKLFPGPHLY GAG VV+WA++ASLVP M KG E AR AHI N +GLF WQ+ TG I QKV +FT+FP
Sbjct: 206 LRDKHYQVGSVILGLGTSFAIEGPVNTFIRAQKLFPGPHLYAGAGVVVSWAMAASLVPLMSKGKESARAAHIAFNVLALGLFTWQLPTGWEITQKVIKFTQFP 308
BLAST of mRNA_H-elongata_contig85604.16147.1 vs. uniprot
Match: A0A7S0P6S8_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0P6S8_9EUKA) HSP 1 Score: 148 bits (374), Expect = 3.400e-42 Identity = 69/103 (66.99%), Postives = 80/103 (77.67%), Query Frame = 1
Query: 10 VRDRHYDTGALLLGLGTFAAIEGPVNTFLRAQKLFPGPHLYVGAGCVVAWAVSASLVPQMQKGNEVARTAHIVINFGMIGLFAWQIWTGIPIAQKVWEFTKFP 318
+RD+HY G+++LGLGT AIEGPVNTFLRAQKLFPGPHLY GAG VV+WA++ASLVP M KG E AR AHI N +GLF WQ+ TG I KV +FTKFP
Sbjct: 180 LRDKHYQVGSVILGLGTSFAIEGPVNTFLRAQKLFPGPHLYAGAGVVVSWAMAASLVPLMSKGKESARIAHIAFNSLALGLFTWQLPTGWEITLKVIKFTKFP 282
BLAST of mRNA_H-elongata_contig85604.16147.1 vs. uniprot
Match: K0SPQ1_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SPQ1_THAOC) HSP 1 Score: 149 bits (375), Expect = 3.500e-42 Identity = 68/102 (66.67%), Postives = 82/102 (80.39%), Query Frame = 1
Query: 13 RDRHYDTGALLLGLGTFAAIEGPVNTFLRAQKLFPGPHLYVGAGCVVAWAVSASLVPQMQKGNEVARTAHIVINFGMIGLFAWQIWTGIPIAQKVWEFTKFP 318
RD+H++ G+ LL LGTF AIEGP+NT+ RA KLFPGPHLY GAGCVV WA++AS VP MQKG++ ARTAHI N +GLFAWQI +GIPI KV +FTK+P
Sbjct: 196 RDKHFNQGSTLLFLGTFFAIEGPLNTYARAGKLFPGPHLYAGAGCVVLWALAASCVPAMQKGDDTARTAHIGANILGLGLFAWQIQSGIPILLKVIQFTKWP 297
BLAST of mRNA_H-elongata_contig85604.16147.1 vs. uniprot
Match: A0A7S3TGQ0_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TGQ0_9SPIT) HSP 1 Score: 147 bits (372), Expect = 5.820e-42 Identity = 67/103 (65.05%), Postives = 80/103 (77.67%), Query Frame = 1
Query: 10 VRDRHYDTGALLLGLGTFAAIEGPVNTFLRAQKLFPGPHLYVGAGCVVAWAVSASLVPQMQKGNEVARTAHIVINFGMIGLFAWQIWTGIPIAQKVWEFTKFP 318
+R++HY G+++LGLGT AIEGPVNTFLRAQKLFPGPHLY GAG VV WA++ASLVP MQKG + AR+ HI N + LF WQ+ TG I QKV +FTKFP
Sbjct: 173 LREKHYQVGSVILGLGTAFAIEGPVNTFLRAQKLFPGPHLYAGAGVVVCWAMAASLVPLMQKGKDSARSEHIAFNAIAVALFTWQVPTGWEITQKVIQFTKFP 275
BLAST of mRNA_H-elongata_contig85604.16147.1 vs. uniprot
Match: R1CWY1_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CWY1_EMIHU) HSP 1 Score: 147 bits (371), Expect = 6.870e-42 Identity = 68/103 (66.02%), Postives = 79/103 (76.70%), Query Frame = 1
Query: 10 VRDRHYDTGALLLGLGTFAAIEGPVNTFLRAQKLFPGPHLYVGAGCVVAWAVSASLVPQMQKGNEVARTAHIVINFGMIGLFAWQIWTGIPIAQKVWEFTKFP 318
+R +HY G+++LGLGT AIEGPVNTFLRAQKLFPGPHLY GAG VV WA++ASLVP M KG + ARTAHI N +GLF WQ+ TG I KV +FTKFP
Sbjct: 167 LRAKHYQVGSVILGLGTAFAIEGPVNTFLRAQKLFPGPHLYAGAGVVVCWAMAASLVPLMSKGKDAARTAHIAFNVLALGLFTWQLPTGWDITLKVIKFTKFP 269
BLAST of mRNA_H-elongata_contig85604.16147.1 vs. uniprot
Match: I0Z2R7_COCSC (Uncharacterized protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z2R7_COCSC) HSP 1 Score: 145 bits (365), Expect = 1.140e-41 Identity = 64/106 (60.38%), Postives = 78/106 (73.58%), Query Frame = 1
Query: 1 RGQVRDRHYDTGALLLGLGTFAAIEGPVNTFLRAQKLFPGPHLYVGAGCVVAWAVSASLVPQMQKGNEVARTAHIVINFGMIGLFAWQIWTGIPIAQKVWEFTKFP 318
+G RD+H++ G+LLLGLG AIEGPVNT+LR KLFPGPHLY GA VV WA +++LVP MQKGN+ AR HI +N + LFAWQ+ TG I QKVWEF +P
Sbjct: 106 KGGYRDKHWNWGSLLLGLGVLIAIEGPVNTYLRTGKLFPGPHLYAGAAIVVLWASASALVPSMQKGNDTARNTHIALNTLNLALFAWQVPTGFEIVQKVWEFAPWP 211 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85604.16147.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig85604.16147.1 >prot_H-elongata_contig85604.16147.1 ID=prot_H-elongata_contig85604.16147.1|Name=mRNA_H-elongata_contig85604.16147.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=107bp RGQVRDRHYDTGALLLGLGTFAAIEGPVNTFLRAQKLFPGPHLYVGAGCVback to top mRNA from alignment at H-elongata_contig85604:677..1456- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig85604.16147.1 ID=mRNA_H-elongata_contig85604.16147.1|Name=mRNA_H-elongata_contig85604.16147.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=780bp|location=Sequence derived from alignment at H-elongata_contig85604:677..1456- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig85604:677..1456- >mRNA_H-elongata_contig85604.16147.1 ID=mRNA_H-elongata_contig85604.16147.1|Name=mRNA_H-elongata_contig85604.16147.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=642bp|location=Sequence derived from alignment at H-elongata_contig85604:677..1456- (Himanthalia elongata Himel1 dioecious)back to top |