mRNA_H-elongata_contig85285.16123.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig85285.16123.1
Unique NamemRNA_H-elongata_contig85285.16123.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig85285.16123.1 vs. uniprot
Match: D7FYC0_ECTSI (GTPBP2, EF1alpha-like GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYC0_ECTSI)

HSP 1 Score: 102 bits (253), Expect = 7.610e-24
Identity = 46/56 (82.14%), Postives = 55/56 (98.21%), Query Frame = 1
Query:    1 MNWRLNEGRGECVYMVGYEDDGKATGVSPADLSASIKTLKVMMKAVGAKISKMEVR 168
            MNWRLNEGRGEC+YM+GYEDDGKATG+SP+DLSASIKTL+VMM+AVGAKI+ M+V+
Sbjct:  250 MNWRLNEGRGECMYMLGYEDDGKATGMSPSDLSASIKTLRVMMEAVGAKIANMQVQ 305          
BLAST of mRNA_H-elongata_contig85285.16123.1 vs. uniprot
Match: A0A6H5KZE4_9PHAE (Tr-type G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE4_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 3.610e-23
Identity = 45/54 (83.33%), Postives = 53/54 (98.15%), Query Frame = 1
Query:    1 MNWRLNEGRGECVYMVGYEDDGKATGVSPADLSASIKTLKVMMKAVGAKISKME 162
            MNWRLNEGRGEC+YM+GYEDDGKATG+SP+DLSASIKTL+VMM+AVGAKI+ M+
Sbjct:  323 MNWRLNEGRGECMYMLGYEDDGKATGMSPSDLSASIKTLRVMMEAVGAKIANMQ 376          
BLAST of mRNA_H-elongata_contig85285.16123.1 vs. uniprot
Match: A0A835YVP3_9STRA (GTP binding protein 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVP3_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 5.680e-12
Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query:    1 MNWRLNEGRGECVYMVGYEDDGKATGVSPADLSASIKTLKVMMKAVGAKI 150
            MNWRLNEG G  VYM+GY DDG+ TG++P +L AS+KTL+ +  A  A+I
Sbjct:   41 MNWRLNEGHGTAVYMIGYTDDGEPTGLAPRELGASLKTLRAIAAAARAEI 90          
BLAST of mRNA_H-elongata_contig85285.16123.1 vs. uniprot
Match: A0A8C6UCG7_9GOBI (GTP binding protein 2 n=4 Tax=Gobiidae TaxID=8220 RepID=A0A8C6UCG7_9GOBI)

HSP 1 Score: 62.8 bits (151), Expect = 4.930e-10
Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = 1
Query:    1 MNWRLNEGRGECVYMVGYEDDGKATGVSPADLSASIKTLKVMMKAVGAKIS 153
            M WRL EG+GE VY +G ED+G   G+S  D+ AS+KTL ++ K VGA IS
Sbjct:   96 MKWRLQEGKGEAVYQIGVEDNGMLVGLSEEDMRASLKTLHLLAKKVGADIS 146          
BLAST of mRNA_H-elongata_contig85285.16123.1 vs. uniprot
Match: A0A3P6SMR2_CYLGO (Uncharacterized protein n=1 Tax=Cylicostephanus goldi TaxID=71465 RepID=A0A3P6SMR2_CYLGO)

HSP 1 Score: 59.7 bits (143), Expect = 1.450e-9
Identity = 26/48 (54.17%), Postives = 35/48 (72.92%), Query Frame = 1
Query:    1 MNWRLNEGRGECVYMVGYEDDGKATGVSPADLSASIKTLKVMMKAVGA 144
            M WRL EG+GE +Y VG ED G+ +G+S A+L AS+ TL+ M  A+GA
Sbjct:   48 MKWRLREGQGEAIYEVGVEDGGQMSGLSDAELEASLTTLRTMANALGA 95          
BLAST of mRNA_H-elongata_contig85285.16123.1 vs. uniprot
Match: UPI0018864393 (GTP-binding protein 2b n=1 Tax=Syngnathus acus TaxID=161584 RepID=UPI0018864393)

HSP 1 Score: 61.2 bits (147), Expect = 1.720e-9
Identity = 29/56 (51.79%), Postives = 38/56 (67.86%), Query Frame = 1
Query:    1 MNWRLNEGRGECVYMVGYEDDGKATGVSPADLSASIKTLKVMMKAVGAKISKMEVR 168
            + WRL EGRGE VY +G ED+G   G+S AD++ASI TL+ M   VGA I+ +  R
Sbjct:   83 LKWRLQEGRGEAVYQIGVEDNGLLVGLSRADMTASIGTLRKMADKVGADITLLRER 138          
BLAST of mRNA_H-elongata_contig85285.16123.1 vs. uniprot
Match: A0A4U5ML10_STECR (Tr-type G domain-containing protein n=1 Tax=Steinernema carpocapsae TaxID=34508 RepID=A0A4U5ML10_STECR)

HSP 1 Score: 60.5 bits (145), Expect = 3.210e-9
Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 1
Query:    1 MNWRLNEGRGECVYMVGYEDDGKATGVSPADLSASIKTLKVMMKAVGA 144
            +NWRL EG+GE +Y++G EDDG   G+   DL AS+KTLK M  A+ A
Sbjct:   77 LNWRLREGQGEAIYVIGVEDDGAMKGLGEEDLEASLKTLKKMTDALDA 124          
BLAST of mRNA_H-elongata_contig85285.16123.1 vs. uniprot
Match: F0Z9L7_DICPU (Tr-type G domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0Z9L7_DICPU)

HSP 1 Score: 60.5 bits (145), Expect = 3.220e-9
Identity = 26/56 (46.43%), Postives = 37/56 (66.07%), Query Frame = 1
Query:    1 MNWRLNEGRGECVYMVGYEDDGKATGVSPADLSASIKTLKVMMKAVGAKISKMEVR 168
            M WR+ EG GECVY +G+ DDG A G+S  D+ AS+ TLK+M   + A ++ +  R
Sbjct:  105 MKWRMGEGGGECVYELGFSDDGTAVGLSDIDMEASLTTLKLMASKLSADLTVVRER 160          
BLAST of mRNA_H-elongata_contig85285.16123.1 vs. uniprot
Match: A0A674PPD9_TAKRU (Tr-type G domain-containing protein n=10 Tax=Eupercaria TaxID=1489922 RepID=A0A674PPD9_TAKRU)

HSP 1 Score: 59.3 bits (142), Expect = 8.220e-9
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 1
Query:    1 MNWRLNEGRGECVYMVGYEDDGKATGVSPADLSASIKTLKVMMKAVGAKIS 153
            M WRL EG GE VY +G ED+G   G+S  +L AS+KTL ++ K VGA I+
Sbjct:   93 MKWRLQEGGGEAVYQIGVEDNGMLVGLSDEELRASLKTLHLLAKKVGADIT 143          
BLAST of mRNA_H-elongata_contig85285.16123.1 vs. uniprot
Match: A0A834I7H8_RHYFE (Tr-type G domain-containing protein n=2 Tax=Dryophthorinae TaxID=39812 RepID=A0A834I7H8_RHYFE)

HSP 1 Score: 58.9 bits (141), Expect = 1.120e-8
Identity = 26/57 (45.61%), Postives = 37/57 (64.91%), Query Frame = 1
Query:    1 MNWRLNEGRGECVYMVGYEDDGKATGVSPADLSASIKTLKVMMKAVGAKISKMEVRL 171
            + WRL EG GE +Y +G ED G  TG+S AD+ AS++TLK M   +GA  + +  R+
Sbjct:   61 LKWRLREGNGEAIYEIGVEDSGVLTGLSKADMKASLQTLKQMATKLGATTTLLRKRI 117          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85285.16123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FYC0_ECTSI7.610e-2482.14GTPBP2, EF1alpha-like GTPase n=1 Tax=Ectocarpus si... [more]
A0A6H5KZE4_9PHAE3.610e-2383.33Tr-type G domain-containing protein n=1 Tax=Ectoca... [more]
A0A835YVP3_9STRA5.680e-1258.00GTP binding protein 2 n=1 Tax=Tribonema minus TaxI... [more]
A0A8C6UCG7_9GOBI4.930e-1054.90GTP binding protein 2 n=4 Tax=Gobiidae TaxID=8220 ... [more]
A0A3P6SMR2_CYLGO1.450e-954.17Uncharacterized protein n=1 Tax=Cylicostephanus go... [more]
UPI00188643931.720e-951.79GTP-binding protein 2b n=1 Tax=Syngnathus acus Tax... [more]
A0A4U5ML10_STECR3.210e-954.17Tr-type G domain-containing protein n=1 Tax=Steine... [more]
F0Z9L7_DICPU3.220e-946.43Tr-type G domain-containing protein n=1 Tax=Dictyo... [more]
A0A674PPD9_TAKRU8.220e-952.94Tr-type G domain-containing protein n=10 Tax=Euper... [more]
A0A834I7H8_RHYFE1.120e-845.61Tr-type G domain-containing protein n=2 Tax=Dryoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig85285contigH-elongata_contig85285:2335..2511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score101.3
Seed ortholog evalue1.6e-19
Seed eggNOG ortholog2880.D7FYC0
EggNOG free text desc.GTP metabolic process
EggNOG OGsCOG5258@1,KOG0463@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionGTPBP2, EF1alpha-like GTPase
Ec32 orthologEc-09_001370.1
Exons1
Model size177
Cds size177
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931256.7829957-CDS-H-elongata_contig85285:2334..25111622931256.7829957-CDS-H-elongata_contig85285:2334..2511Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85285 2335..2511 -
1691679762.2526064-CDS-H-elongata_contig85285:2334..25111691679762.2526064-CDS-H-elongata_contig85285:2334..2511Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85285 2335..2511 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig85285.16123.1prot_H-elongata_contig85285.16123.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig85285 2335..2511 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig85285.16123.1

>prot_H-elongata_contig85285.16123.1 ID=prot_H-elongata_contig85285.16123.1|Name=mRNA_H-elongata_contig85285.16123.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp
MNWRLNEGRGECVYMVGYEDDGKATGVSPADLSASIKTLKVMMKAVGAKI
SKMEVRLR*
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mRNA from alignment at H-elongata_contig85285:2335..2511-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig85285.16123.1 ID=mRNA_H-elongata_contig85285.16123.1|Name=mRNA_H-elongata_contig85285.16123.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=177bp|location=Sequence derived from alignment at H-elongata_contig85285:2335..2511- (Himanthalia elongata Himel1 dioecious)
ATGAACTGGCGCCTAAACGAGGGTCGAGGGGAGTGCGTGTACATGGTTGG TTATGAGGACGATGGAAAGGCCACCGGCGTTTCCCCCGCCGACCTGAGCG CGTCGATCAAGACGCTCAAGGTCATGATGAAGGCCGTCGGGGCGAAGATC TCCAAGATGGAGGTACGTTTGCGTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig85285:2335..2511-

>mRNA_H-elongata_contig85285.16123.1 ID=mRNA_H-elongata_contig85285.16123.1|Name=mRNA_H-elongata_contig85285.16123.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at H-elongata_contig85285:2335..2511- (Himanthalia elongata Himel1 dioecious)
ATGAACTGGCGCCTAAACGAGGGTCGAGGGGAGTGCGTGTACATGGTTGG
TTATGAGGACGATGGAAAGGCCACCGGCGTTTCCCCCGCCGACCTGAGCG
CGTCGATCAAGACGCTCAAGGTCATGATGAAGGCCGTCGGGGCGAAGATC
TCCAAGATGGAGGTACGTTTGCGTTAGATGAACTGGCGCCTAAACGAGGG
TCGAGGGGAGTGCGTGTACATGGTTGGTTATGAGGACGATGGAAAGGCCA
CCGGCGTTTCCCCCGCCGACCTGAGCGCGTCGATCAAGACGCTCAAGGTC
ATGATGAAGGCCGTCGGGGCGAAGATCTCCAAGATGGAGGTACGTTTGCG
TTAG
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