mRNA_H-elongata_contig85285.16123.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig85285.16123.1 vs. uniprot
Match: D7FYC0_ECTSI (GTPBP2, EF1alpha-like GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYC0_ECTSI) HSP 1 Score: 102 bits (253), Expect = 7.610e-24 Identity = 46/56 (82.14%), Postives = 55/56 (98.21%), Query Frame = 1
Query: 1 MNWRLNEGRGECVYMVGYEDDGKATGVSPADLSASIKTLKVMMKAVGAKISKMEVR 168
MNWRLNEGRGEC+YM+GYEDDGKATG+SP+DLSASIKTL+VMM+AVGAKI+ M+V+
Sbjct: 250 MNWRLNEGRGECMYMLGYEDDGKATGMSPSDLSASIKTLRVMMEAVGAKIANMQVQ 305
BLAST of mRNA_H-elongata_contig85285.16123.1 vs. uniprot
Match: A0A6H5KZE4_9PHAE (Tr-type G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZE4_9PHAE) HSP 1 Score: 100 bits (248), Expect = 3.610e-23 Identity = 45/54 (83.33%), Postives = 53/54 (98.15%), Query Frame = 1
Query: 1 MNWRLNEGRGECVYMVGYEDDGKATGVSPADLSASIKTLKVMMKAVGAKISKME 162
MNWRLNEGRGEC+YM+GYEDDGKATG+SP+DLSASIKTL+VMM+AVGAKI+ M+
Sbjct: 323 MNWRLNEGRGECMYMLGYEDDGKATGMSPSDLSASIKTLRVMMEAVGAKIANMQ 376
BLAST of mRNA_H-elongata_contig85285.16123.1 vs. uniprot
Match: A0A835YVP3_9STRA (GTP binding protein 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVP3_9STRA) HSP 1 Score: 67.8 bits (164), Expect = 5.680e-12 Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query: 1 MNWRLNEGRGECVYMVGYEDDGKATGVSPADLSASIKTLKVMMKAVGAKI 150
MNWRLNEG G VYM+GY DDG+ TG++P +L AS+KTL+ + A A+I
Sbjct: 41 MNWRLNEGHGTAVYMIGYTDDGEPTGLAPRELGASLKTLRAIAAAARAEI 90
BLAST of mRNA_H-elongata_contig85285.16123.1 vs. uniprot
Match: A0A8C6UCG7_9GOBI (GTP binding protein 2 n=4 Tax=Gobiidae TaxID=8220 RepID=A0A8C6UCG7_9GOBI) HSP 1 Score: 62.8 bits (151), Expect = 4.930e-10 Identity = 28/51 (54.90%), Postives = 36/51 (70.59%), Query Frame = 1
Query: 1 MNWRLNEGRGECVYMVGYEDDGKATGVSPADLSASIKTLKVMMKAVGAKIS 153
M WRL EG+GE VY +G ED+G G+S D+ AS+KTL ++ K VGA IS
Sbjct: 96 MKWRLQEGKGEAVYQIGVEDNGMLVGLSEEDMRASLKTLHLLAKKVGADIS 146
BLAST of mRNA_H-elongata_contig85285.16123.1 vs. uniprot
Match: A0A3P6SMR2_CYLGO (Uncharacterized protein n=1 Tax=Cylicostephanus goldi TaxID=71465 RepID=A0A3P6SMR2_CYLGO) HSP 1 Score: 59.7 bits (143), Expect = 1.450e-9 Identity = 26/48 (54.17%), Postives = 35/48 (72.92%), Query Frame = 1
Query: 1 MNWRLNEGRGECVYMVGYEDDGKATGVSPADLSASIKTLKVMMKAVGA 144
M WRL EG+GE +Y VG ED G+ +G+S A+L AS+ TL+ M A+GA
Sbjct: 48 MKWRLREGQGEAIYEVGVEDGGQMSGLSDAELEASLTTLRTMANALGA 95
BLAST of mRNA_H-elongata_contig85285.16123.1 vs. uniprot
Match: UPI0018864393 (GTP-binding protein 2b n=1 Tax=Syngnathus acus TaxID=161584 RepID=UPI0018864393) HSP 1 Score: 61.2 bits (147), Expect = 1.720e-9 Identity = 29/56 (51.79%), Postives = 38/56 (67.86%), Query Frame = 1
Query: 1 MNWRLNEGRGECVYMVGYEDDGKATGVSPADLSASIKTLKVMMKAVGAKISKMEVR 168
+ WRL EGRGE VY +G ED+G G+S AD++ASI TL+ M VGA I+ + R
Sbjct: 83 LKWRLQEGRGEAVYQIGVEDNGLLVGLSRADMTASIGTLRKMADKVGADITLLRER 138
BLAST of mRNA_H-elongata_contig85285.16123.1 vs. uniprot
Match: A0A4U5ML10_STECR (Tr-type G domain-containing protein n=1 Tax=Steinernema carpocapsae TaxID=34508 RepID=A0A4U5ML10_STECR) HSP 1 Score: 60.5 bits (145), Expect = 3.210e-9 Identity = 26/48 (54.17%), Postives = 34/48 (70.83%), Query Frame = 1
Query: 1 MNWRLNEGRGECVYMVGYEDDGKATGVSPADLSASIKTLKVMMKAVGA 144
+NWRL EG+GE +Y++G EDDG G+ DL AS+KTLK M A+ A
Sbjct: 77 LNWRLREGQGEAIYVIGVEDDGAMKGLGEEDLEASLKTLKKMTDALDA 124
BLAST of mRNA_H-elongata_contig85285.16123.1 vs. uniprot
Match: F0Z9L7_DICPU (Tr-type G domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0Z9L7_DICPU) HSP 1 Score: 60.5 bits (145), Expect = 3.220e-9 Identity = 26/56 (46.43%), Postives = 37/56 (66.07%), Query Frame = 1
Query: 1 MNWRLNEGRGECVYMVGYEDDGKATGVSPADLSASIKTLKVMMKAVGAKISKMEVR 168
M WR+ EG GECVY +G+ DDG A G+S D+ AS+ TLK+M + A ++ + R
Sbjct: 105 MKWRMGEGGGECVYELGFSDDGTAVGLSDIDMEASLTTLKLMASKLSADLTVVRER 160
BLAST of mRNA_H-elongata_contig85285.16123.1 vs. uniprot
Match: A0A674PPD9_TAKRU (Tr-type G domain-containing protein n=10 Tax=Eupercaria TaxID=1489922 RepID=A0A674PPD9_TAKRU) HSP 1 Score: 59.3 bits (142), Expect = 8.220e-9 Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 1
Query: 1 MNWRLNEGRGECVYMVGYEDDGKATGVSPADLSASIKTLKVMMKAVGAKIS 153
M WRL EG GE VY +G ED+G G+S +L AS+KTL ++ K VGA I+
Sbjct: 93 MKWRLQEGGGEAVYQIGVEDNGMLVGLSDEELRASLKTLHLLAKKVGADIT 143
BLAST of mRNA_H-elongata_contig85285.16123.1 vs. uniprot
Match: A0A834I7H8_RHYFE (Tr-type G domain-containing protein n=2 Tax=Dryophthorinae TaxID=39812 RepID=A0A834I7H8_RHYFE) HSP 1 Score: 58.9 bits (141), Expect = 1.120e-8 Identity = 26/57 (45.61%), Postives = 37/57 (64.91%), Query Frame = 1
Query: 1 MNWRLNEGRGECVYMVGYEDDGKATGVSPADLSASIKTLKVMMKAVGAKISKMEVRL 171
+ WRL EG GE +Y +G ED G TG+S AD+ AS++TLK M +GA + + R+
Sbjct: 61 LKWRLREGNGEAIYEIGVEDSGVLTGLSKADMKASLQTLKQMATKLGATTTLLRKRI 117 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85285.16123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig85285.16123.1 >prot_H-elongata_contig85285.16123.1 ID=prot_H-elongata_contig85285.16123.1|Name=mRNA_H-elongata_contig85285.16123.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp MNWRLNEGRGECVYMVGYEDDGKATGVSPADLSASIKTLKVMMKAVGAKIback to top mRNA from alignment at H-elongata_contig85285:2335..2511- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig85285.16123.1 ID=mRNA_H-elongata_contig85285.16123.1|Name=mRNA_H-elongata_contig85285.16123.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=177bp|location=Sequence derived from alignment at H-elongata_contig85285:2335..2511- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig85285:2335..2511- >mRNA_H-elongata_contig85285.16123.1 ID=mRNA_H-elongata_contig85285.16123.1|Name=mRNA_H-elongata_contig85285.16123.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at H-elongata_contig85285:2335..2511- (Himanthalia elongata Himel1 dioecious)back to top |