mRNA_H-elongata_contig85163.16106.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig85163.16106.1
Unique NamemRNA_H-elongata_contig85163.16106.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig85163.16106.1 vs. uniprot
Match: D8LI27_ECTSI (Rieske domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI27_ECTSI)

HSP 1 Score: 236 bits (602), Expect = 4.990e-77
Identity = 112/145 (77.24%), Postives = 124/145 (85.52%), Query Frame = 1
Query:   34 WLPILPISEAPSPGKAKSVFAADLDLCVAADESGLLYVFGNKCPPTNQPLSFSPVVNNIIKDPVLGTTINIETGDVIDWCPSILGKLLSPILGSKPEDAGVPTFQVRSKSGQLEAYVQVNAKAAYESRYWKGILDAQGKADGEYF 468
            W+PILPI EAP+PG AKSV+ ADLDLCVAADE GLLYV GNKCPP NQPLSFS V NNIIKDPVLGT I+IETGDVI+WCP++LGKLLSPILG++PE+AGV TF VR K G LEA V VNAKA +E  YW GILDAQGKADG Y+
Sbjct:   50 WVPILPIDEAPTPGTAKSVYVADLDLCVAADERGLLYVLGNKCPPANQPLSFSLVSNNIIKDPVLGTKIDIETGDVIEWCPNLLGKLLSPILGAQPENAGVQTFVVRQKGGNLEAKVNVNAKAEFEKSYWTGILDAQGKADGGYY 194          
BLAST of mRNA_H-elongata_contig85163.16106.1 vs. uniprot
Match: A0A7R9VVY4_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VVY4_9STRA)

HSP 1 Score: 163 bits (412), Expect = 2.860e-48
Identity = 76/154 (49.35%), Postives = 101/154 (65.58%), Query Frame = 1
Query:   10 GGVKEKFDWLPILPISEAPSPGKAKSVFAADLDLCVAADESGLLYVFGNKCPPTNQPLSFSPVVNNIIKDPVLGTTINIETGDVI-DWCPSILGKLLSPILGSKPEDAGVPTFQVRSKSGQLEAYVQVNAKAAYESRYWKGILDAQGKADGEYF 468
            G  ++   ++P +P+ + P PG A S  A  L +C+A D SG +Y  G+KCPP NQPLSF  V    I+DPVLGT  +++TG+V+ DWCPS +GKLL  +     E  GVP F V+     +E  V VNAKA +ES+YW GILDAQGKADG+Y+
Sbjct:   37 GLFQQSLKYVPCIPVEQLPKPGTATSGVAGGLAICIAVDPSGSIYALGDKCPPVNQPLSFGKVTAGAIEDPVLGTKFSLKTGEVVGDWCPSGIGKLLGGLF----EPVGVPVFPVKKSGANIEVQVDVNAKANFESQYWSGILDAQGKADGKYY 186          
BLAST of mRNA_H-elongata_contig85163.16106.1 vs. uniprot
Match: A0A7S0AYK8_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AYK8_9STRA)

HSP 1 Score: 162 bits (409), Expect = 1.280e-47
Identity = 74/157 (47.13%), Postives = 105/157 (66.88%), Query Frame = 1
Query:    1 MAGGGVKEKFDWLPILPISEAPSPGKAKSVFAADLDLCVAADESGLLYVFGNKCPPTNQPLSFSPVVNNIIKDPVLGTTINIETGDVID-WCPSILGKLLSPILGSKPEDAGVPTFQVRSKSGQLEAYVQVNAKAAYESRYWKGILDAQGKADGEYF 468
            +  G +  K  ++P +P+ + P+PG A S  A  L +C+A D SG +Y  G+KCPP NQPLSF  V  N I+DPVLGT  +++TG+V+  WCPS +GKLL  +     +  GVPT+ V+ K   +E  V VNAKA +ES+YW G+LDAQGK++G+Y+
Sbjct:   49 LEAGKLASKMQYVPCIPVDKLPAPGSATSGVAGGLAICIAVDPSGSVYALGDKCPPVNQPLSFGRVDGNSIEDPVLGTKFSLKTGEVVGAWCPSGIGKLLGGLF----DPIGVPTYPVKKKGANIEVQVDVNAKANFESQYWSGVLDAQGKSNGKYY 201          
BLAST of mRNA_H-elongata_contig85163.16106.1 vs. uniprot
Match: A0A7S2TF77_PROMC (Hypothetical protein n=1 Tax=Prorocentrum micans TaxID=2945 RepID=A0A7S2TF77_PROMC)

HSP 1 Score: 159 bits (401), Expect = 5.290e-47
Identity = 77/155 (49.68%), Postives = 102/155 (65.81%), Query Frame = 1
Query:   10 GGVKEKFDWLPILPISEAPSPGKAKSVFAADLDLCVAADESGLLYVFGNKCPPTNQPLSFSPVVNNIIKDPVLGTTINIETGDVI--DWCPSILGKLLSPILGSKPEDAGVPTFQVRSKSGQLEAYVQVNAKAAYESRYWKGILDAQGKADGEYF 468
            G +K K  ++P +   E P PGKA S  A  L +C+A DE G ++  G+KCPP NQPLSF  V +  I+DPVLGT  N++TG V   DWC S +GK    I+G   E AGVPT+  ++K   +E  V VN KAA+ES+YW GILDAQGK++G+Y+
Sbjct:    6 GPIKPKLQFVPCISKDELPGPGKATSGVAGGLAICIAVDEKGSVFALGDKCPPINQPLSFGKVADGCIQDPVLGTKFNLKTGAVAEGDWCTSPIGK----IVGGLFEPAGVPTYSCKTKGSVVEVQVDVNYKAAFESQYWSGILDAQGKSNGKYY 156          
BLAST of mRNA_H-elongata_contig85163.16106.1 vs. uniprot
Match: A0A6U5FSV0_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5FSV0_9STRA)

HSP 1 Score: 156 bits (394), Expect = 1.580e-45
Identity = 70/150 (46.67%), Postives = 100/150 (66.67%), Query Frame = 1
Query:   19 KEKFDWLPILPISEAPSPGKAKSVFAADLDLCVAADESGLLYVFGNKCPPTNQPLSFSPVVNNIIKDPVLGTTINIETGDVIDWCPSILGKLLSPILGSKPEDAGVPTFQVRSKSGQLEAYVQVNAKAAYESRYWKGILDAQGKADGEYF 468
            K+   ++P++   +AP PG A S  A  L +CVA   +G LY  G+KCPP NQPLSF  V  + I+DPVLGT  +++TG+V+DWCP+ +GKL+  +     E AGVPT+ ++S    +E  V VN K  +E+ YW G+LDAQGKA+G+Y+
Sbjct:   42 KQALKYVPVITKEQAPKPGSATSGVAGGLAICVACSPTGQLYALGDKCPPVNQPLSFGKVNKDTIEDPVLGTKFSLKTGEVVDWCPAGIGKLVGGLF----EPAGVPTYPIKSTGKNIEVQVDVNYKLNFEAEYWSGVLDAQGKANGKYY 187          
BLAST of mRNA_H-elongata_contig85163.16106.1 vs. uniprot
Match: A0A7S2IGL8_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IGL8_9STRA)

HSP 1 Score: 155 bits (391), Expect = 3.980e-45
Identity = 75/154 (48.70%), Postives = 99/154 (64.29%), Query Frame = 1
Query:   10 GGVKEKFDWLPILPISEAPSPGKAKSVFAADLDLCVAADESGLLYVFGNKCPPTNQPLSFSPVVNNIIKDPVLGTTINIETGDVID-WCPSILGKLLSPILGSKPEDAGVPTFQVRSKSGQLEAYVQVNAKAAYESRYWKGILDAQGKADGEYF 468
            G  K K  ++P +   + P PG A S  A  L +C+A DE G +Y  G+KCPP NQPLSF  V    I+DPVLGT  N++TG+V   WCP  +GKLL  +     E +GVP F V++  G +E  V VNAKA +ES+YW G+LDAQGKA+G+Y+
Sbjct:   34 GPFKSKVQYVPCISTEDLPEPGFATSGVAGGLAICIAVDEKGSVYALGDKCPPVNQPLSFGRVRGGCIEDPVLGTKFNLKTGEVEGKWCPGGIGKLLGGLF----EPSGVPVFPVKTGKGVVEVQVDVNAKANFESQYWSGVLDAQGKANGKYY 183          
BLAST of mRNA_H-elongata_contig85163.16106.1 vs. uniprot
Match: A0A6S9DYT7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9DYT7_9STRA)

HSP 1 Score: 154 bits (389), Expect = 8.230e-45
Identity = 72/154 (46.75%), Postives = 102/154 (66.23%), Query Frame = 1
Query:   10 GGVKEKFDWLPILPISEAPSPGKAKSVFAADLDLCVAADESGLLYVFGNKCPPTNQPLSFSPVVNNIIKDPVLGTTINIETGDVID-WCPSILGKLLSPILGSKPEDAGVPTFQVRSKSGQLEAYVQVNAKAAYESRYWKGILDAQGKADGEYF 468
            G  K K  ++P +   + P+PG+A S  A  L +C+A DE+G +Y  G+KCPP NQPLSF  V    I+DPVLGT  N++TG+V   WCP  +GKLL  +     + +GVP + V++  G ++  V VNAKA +ES+YW G+LDAQGKA+G+Y+
Sbjct:   35 GPFKAKVQYVPCIATEDLPAPGQATSGVAGGLAICIAVDENGSVYALGDKCPPINQPLSFGRVAGGCIEDPVLGTKFNLKTGEVEGKWCPGGVGKLLGGLF----DPSGVPVYPVKTGKGTVDVQVDVNAKANFESQYWSGVLDAQGKANGKYY 184          
BLAST of mRNA_H-elongata_contig85163.16106.1 vs. uniprot
Match: A0A7S4J166_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J166_9STRA)

HSP 1 Score: 157 bits (397), Expect = 8.640e-45
Identity = 73/157 (46.50%), Postives = 101/157 (64.33%), Query Frame = 1
Query:    1 MAGGGVKEKFDWLPILPISEAPSPGKAKSVFAADLDLCVAADESGLLYVFGNKCPPTNQPLSFSPVVNNIIKDPVLGTTINIETGDVID-WCPSILGKLLSPILGSKPEDAGVPTFQVRSKSGQLEAYVQVNAKAAYESRYWKGILDAQGKADGEYF 468
            MA   + +   ++P +P+   P PG A S  A  L +C+A D SG ++  G+KCPP NQPLSF  V +  I+DPVLGT  ++++GDV+  WCPS +GKLL  +     +  GVP + V+     +E  V VNAKA YES+YW G+LDAQGKADG+Y+
Sbjct:  132 MAKKPLGQSLKYVPCIPVDSLPKPGTATSGVAGGLAICIAVDPSGSIFALGDKCPPVNQPLSFGKVADGTIEDPVLGTKFSLKSGDVVGAWCPSGIGKLLGGLF----DPYGVPVYPVKKSGANIEVQVDVNAKANYESQYWSGVLDAQGKADGKYY 284          
BLAST of mRNA_H-elongata_contig85163.16106.1 vs. uniprot
Match: A0A7S2E968_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2E968_TRICV)

HSP 1 Score: 152 bits (385), Expect = 3.220e-44
Identity = 71/149 (47.65%), Postives = 98/149 (65.77%), Query Frame = 1
Query:   25 KFDWLPILPISEAPSPGKAKSVFAADLDLCVAADESGLLYVFGNKCPPTNQPLSFSPVVNNIIKDPVLGTTINIETGDVID-WCPSILGKLLSPILGSKPEDAGVPTFQVRSKSGQLEAYVQVNAKAAYESRYWKGILDAQGKADGEYF 468
            K  ++P + + + P PG A S  A  L +C+A D SG ++  G+KCPP NQPLSF  V    I+DPVLGT  +++TG+V+  WCPS +GKLL  +     E +GVP + V+     +E  V VNAKA +ES+YW G+LDAQGKADG+Y+
Sbjct:   39 KLQYVPCVAVDKLPKPGLATSGVAGGLAICIAVDPSGSVFALGDKCPPVNQPLSFGRVSEGTIEDPVLGTKFSLKTGEVVGPWCPSGIGKLLGGLF----EPSGVPVYPVKKAGANIEVQVDVNAKANFESQYWSGVLDAQGKADGKYY 183          
BLAST of mRNA_H-elongata_contig85163.16106.1 vs. uniprot
Match: K0SEG8_THAOC (Rieske domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SEG8_THAOC)

HSP 1 Score: 141 bits (356), Expect = 8.140e-40
Identity = 66/146 (45.21%), Postives = 96/146 (65.75%), Query Frame = 1
Query:   34 WLPILPISEAPSPGKAKSVFAADLDLCVAADESGLLYVFGNKCPPTNQPLSFSPVVNN-IIKDPVLGTTINIETGDVIDWCPSILGKLLSPILGSKPEDAGVPTFQVRSKSGQLEAYVQVNAKAAYESRYWKGILDAQGKADGEYF 468
            ++P +   + P+ G A S  A  L +C+A D  G +Y  G+KCPP NQPLSF  V ++  I DPVLGT  +++TG+V+ WCP+ LGKL+  +     +  GVPT+ V++K   +E  V VN K  +E+ YW+GILDAQGK+DG+Y+
Sbjct:   43 YVPCISTDDLPAAGSATSGVAGGLAICIAVDPRGAVYALGDKCPPVNQPLSFGKVGDDGTISDPVLGTKFSLKTGEVVSWCPTGLGKLIGGLF----DPVGVPTYPVKAKGKTVEVQVDVNYKYNFETDYWQGILDAQGKSDGKYY 184          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85163.16106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LI27_ECTSI4.990e-7777.24Rieske domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A7R9VVY4_9STRA2.860e-4849.35Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S0AYK8_9STRA1.280e-4747.13Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S2TF77_PROMC5.290e-4749.68Hypothetical protein n=1 Tax=Prorocentrum micans T... [more]
A0A6U5FSV0_9STRA1.580e-4546.67Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2IGL8_9STRA3.980e-4548.70Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A6S9DYT7_9STRA8.230e-4546.75Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4J166_9STRA8.640e-4546.50Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S2E968_TRICV3.220e-4447.65Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
K0SEG8_THAOC8.140e-4045.21Rieske domain-containing protein n=1 Tax=Thalassio... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig85163contigH-elongata_contig85163:1161..1631 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score237.3
Seed ortholog evalue5e-60
Seed eggNOG ortholog2880.D8LI27
EggNOG free text desc.Rieske-like [2Fe-2S] domain
EggNOG OGs2DKM1@1,2S634@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRieske [2Fe-2S] iron-sulphur domain
Ec32 orthologEc-04_003000.1
Exons1
Model size471
Cds size471
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931255.0692832-CDS-H-elongata_contig85163:1160..16311622931255.0692832-CDS-H-elongata_contig85163:1160..1631Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85163 1161..1631 +
1691679761.581168-CDS-H-elongata_contig85163:1160..16311691679761.581168-CDS-H-elongata_contig85163:1160..1631Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig85163 1161..1631 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig85163.16106.1prot_H-elongata_contig85163.16106.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig85163 1161..1631 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig85163.16106.1

>prot_H-elongata_contig85163.16106.1 ID=prot_H-elongata_contig85163.16106.1|Name=mRNA_H-elongata_contig85163.16106.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=157bp
MAGGGVKEKFDWLPILPISEAPSPGKAKSVFAADLDLCVAADESGLLYVF
GNKCPPTNQPLSFSPVVNNIIKDPVLGTTINIETGDVIDWCPSILGKLLS
PILGSKPEDAGVPTFQVRSKSGQLEAYVQVNAKAAYESRYWKGILDAQGK
ADGEYF*
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mRNA from alignment at H-elongata_contig85163:1161..1631+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig85163.16106.1 ID=mRNA_H-elongata_contig85163.16106.1|Name=mRNA_H-elongata_contig85163.16106.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=471bp|location=Sequence derived from alignment at H-elongata_contig85163:1161..1631+ (Himanthalia elongata Himel1 dioecious)
ATGGCGGGAGGAGGCGTCAAGGAAAAGTTCGATTGGTTGCCGATCCTCCC CATCTCGGAGGCCCCGTCTCCGGGCAAGGCGAAGTCCGTGTTCGCGGCCG ACCTCGACCTCTGTGTGGCCGCGGACGAGAGCGGGTTGCTTTACGTGTTC GGTAACAAGTGTCCCCCAACGAACCAGCCCCTGTCTTTCAGCCCCGTCGT GAACAACATCATCAAGGACCCCGTGCTGGGGACGACGATCAATATCGAGA CCGGTGACGTTATCGATTGGTGTCCCTCGATCTTGGGAAAGCTCCTGAGT CCGATTCTAGGCTCGAAGCCGGAAGATGCCGGCGTGCCGACCTTCCAGGT TCGGTCCAAGAGCGGTCAGCTGGAGGCGTACGTTCAGGTGAACGCGAAGG CGGCGTACGAGTCCAGGTACTGGAAGGGGATCTTGGATGCCCAGGGCAAG GCCGACGGCGAATACTTCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig85163:1161..1631+

>mRNA_H-elongata_contig85163.16106.1 ID=mRNA_H-elongata_contig85163.16106.1|Name=mRNA_H-elongata_contig85163.16106.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=942bp|location=Sequence derived from alignment at H-elongata_contig85163:1161..1631+ (Himanthalia elongata Himel1 dioecious)
ATGGCGGGAGGAGGCGTCAAGGAAAAGTTCGATTGGTTGCCGATCCTCCC
CATCTCGGAGGCCCCGTCTCCGGGCAAGGCGAAGTCCGTGTTCGCGGCCG
ACCTCGACCTCTGTGTGGCCGCGGACGAGAGCGGGTTGCTTTACGTGTTC
GGTAACAAGTGTCCCCCAACGAACCAGCCCCTGTCTTTCAGCCCCGTCGT
GAACAACATCATCAAGGACCCCGTGCTGGGGACGACGATCAATATCGAGA
CCGGTGACGTTATCGATTGGTGTCCCTCGATCTTGGGAAAGCTCCTGAGT
CCGATTCTAGGCTCGAAGCCGGAAGATGCCGGCGTGCCGACCTTCCAGGT
TCGGTCCAAGAGCGGTCAGCTGGAGGCGTACGTTCAGGTGAACGCGAAGG
CGGCGTACGAGTCCAGGTACTGGAAGGGGATCTTGGATGCCCAGGGCAAG
GCCGACGGCGAATACTTCTAAATGGCGGGAGGAGGCGTCAAGGAAAAGTT
CGATTGGTTGCCGATCCTCCCCATCTCGGAGGCCCCGTCTCCGGGCAAGG
CGAAGTCCGTGTTCGCGGCCGACCTCGACCTCTGTGTGGCCGCGGACGAG
AGCGGGTTGCTTTACGTGTTCGGTAACAAGTGTCCCCCAACGAACCAGCC
CCTGTCTTTCAGCCCCGTCGTGAACAACATCATCAAGGACCCCGTGCTGG
GGACGACGATCAATATCGAGACCGGTGACGTTATCGATTGGTGTCCCTCG
ATCTTGGGAAAGCTCCTGAGTCCGATTCTAGGCTCGAAGCCGGAAGATGC
CGGCGTGCCGACCTTCCAGGTTCGGTCCAAGAGCGGTCAGCTGGAGGCGT
ACGTTCAGGTGAACGCGAAGGCGGCGTACGAGTCCAGGTACTGGAAGGGG
ATCTTGGATGCCCAGGGCAAGGCCGACGGCGAATACTTCTAA
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