mRNA_H-elongata_contig85163.16106.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig85163.16106.1 vs. uniprot
Match: D8LI27_ECTSI (Rieske domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI27_ECTSI) HSP 1 Score: 236 bits (602), Expect = 4.990e-77 Identity = 112/145 (77.24%), Postives = 124/145 (85.52%), Query Frame = 1
Query: 34 WLPILPISEAPSPGKAKSVFAADLDLCVAADESGLLYVFGNKCPPTNQPLSFSPVVNNIIKDPVLGTTINIETGDVIDWCPSILGKLLSPILGSKPEDAGVPTFQVRSKSGQLEAYVQVNAKAAYESRYWKGILDAQGKADGEYF 468
W+PILPI EAP+PG AKSV+ ADLDLCVAADE GLLYV GNKCPP NQPLSFS V NNIIKDPVLGT I+IETGDVI+WCP++LGKLLSPILG++PE+AGV TF VR K G LEA V VNAKA +E YW GILDAQGKADG Y+
Sbjct: 50 WVPILPIDEAPTPGTAKSVYVADLDLCVAADERGLLYVLGNKCPPANQPLSFSLVSNNIIKDPVLGTKIDIETGDVIEWCPNLLGKLLSPILGAQPENAGVQTFVVRQKGGNLEAKVNVNAKAEFEKSYWTGILDAQGKADGGYY 194
BLAST of mRNA_H-elongata_contig85163.16106.1 vs. uniprot
Match: A0A7R9VVY4_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VVY4_9STRA) HSP 1 Score: 163 bits (412), Expect = 2.860e-48 Identity = 76/154 (49.35%), Postives = 101/154 (65.58%), Query Frame = 1
Query: 10 GGVKEKFDWLPILPISEAPSPGKAKSVFAADLDLCVAADESGLLYVFGNKCPPTNQPLSFSPVVNNIIKDPVLGTTINIETGDVI-DWCPSILGKLLSPILGSKPEDAGVPTFQVRSKSGQLEAYVQVNAKAAYESRYWKGILDAQGKADGEYF 468
G ++ ++P +P+ + P PG A S A L +C+A D SG +Y G+KCPP NQPLSF V I+DPVLGT +++TG+V+ DWCPS +GKLL + E GVP F V+ +E V VNAKA +ES+YW GILDAQGKADG+Y+
Sbjct: 37 GLFQQSLKYVPCIPVEQLPKPGTATSGVAGGLAICIAVDPSGSIYALGDKCPPVNQPLSFGKVTAGAIEDPVLGTKFSLKTGEVVGDWCPSGIGKLLGGLF----EPVGVPVFPVKKSGANIEVQVDVNAKANFESQYWSGILDAQGKADGKYY 186
BLAST of mRNA_H-elongata_contig85163.16106.1 vs. uniprot
Match: A0A7S0AYK8_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0AYK8_9STRA) HSP 1 Score: 162 bits (409), Expect = 1.280e-47 Identity = 74/157 (47.13%), Postives = 105/157 (66.88%), Query Frame = 1
Query: 1 MAGGGVKEKFDWLPILPISEAPSPGKAKSVFAADLDLCVAADESGLLYVFGNKCPPTNQPLSFSPVVNNIIKDPVLGTTINIETGDVID-WCPSILGKLLSPILGSKPEDAGVPTFQVRSKSGQLEAYVQVNAKAAYESRYWKGILDAQGKADGEYF 468
+ G + K ++P +P+ + P+PG A S A L +C+A D SG +Y G+KCPP NQPLSF V N I+DPVLGT +++TG+V+ WCPS +GKLL + + GVPT+ V+ K +E V VNAKA +ES+YW G+LDAQGK++G+Y+
Sbjct: 49 LEAGKLASKMQYVPCIPVDKLPAPGSATSGVAGGLAICIAVDPSGSVYALGDKCPPVNQPLSFGRVDGNSIEDPVLGTKFSLKTGEVVGAWCPSGIGKLLGGLF----DPIGVPTYPVKKKGANIEVQVDVNAKANFESQYWSGVLDAQGKSNGKYY 201
BLAST of mRNA_H-elongata_contig85163.16106.1 vs. uniprot
Match: A0A7S2TF77_PROMC (Hypothetical protein n=1 Tax=Prorocentrum micans TaxID=2945 RepID=A0A7S2TF77_PROMC) HSP 1 Score: 159 bits (401), Expect = 5.290e-47 Identity = 77/155 (49.68%), Postives = 102/155 (65.81%), Query Frame = 1
Query: 10 GGVKEKFDWLPILPISEAPSPGKAKSVFAADLDLCVAADESGLLYVFGNKCPPTNQPLSFSPVVNNIIKDPVLGTTINIETGDVI--DWCPSILGKLLSPILGSKPEDAGVPTFQVRSKSGQLEAYVQVNAKAAYESRYWKGILDAQGKADGEYF 468
G +K K ++P + E P PGKA S A L +C+A DE G ++ G+KCPP NQPLSF V + I+DPVLGT N++TG V DWC S +GK I+G E AGVPT+ ++K +E V VN KAA+ES+YW GILDAQGK++G+Y+
Sbjct: 6 GPIKPKLQFVPCISKDELPGPGKATSGVAGGLAICIAVDEKGSVFALGDKCPPINQPLSFGKVADGCIQDPVLGTKFNLKTGAVAEGDWCTSPIGK----IVGGLFEPAGVPTYSCKTKGSVVEVQVDVNYKAAFESQYWSGILDAQGKSNGKYY 156
BLAST of mRNA_H-elongata_contig85163.16106.1 vs. uniprot
Match: A0A6U5FSV0_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5FSV0_9STRA) HSP 1 Score: 156 bits (394), Expect = 1.580e-45 Identity = 70/150 (46.67%), Postives = 100/150 (66.67%), Query Frame = 1
Query: 19 KEKFDWLPILPISEAPSPGKAKSVFAADLDLCVAADESGLLYVFGNKCPPTNQPLSFSPVVNNIIKDPVLGTTINIETGDVIDWCPSILGKLLSPILGSKPEDAGVPTFQVRSKSGQLEAYVQVNAKAAYESRYWKGILDAQGKADGEYF 468
K+ ++P++ +AP PG A S A L +CVA +G LY G+KCPP NQPLSF V + I+DPVLGT +++TG+V+DWCP+ +GKL+ + E AGVPT+ ++S +E V VN K +E+ YW G+LDAQGKA+G+Y+
Sbjct: 42 KQALKYVPVITKEQAPKPGSATSGVAGGLAICVACSPTGQLYALGDKCPPVNQPLSFGKVNKDTIEDPVLGTKFSLKTGEVVDWCPAGIGKLVGGLF----EPAGVPTYPIKSTGKNIEVQVDVNYKLNFEAEYWSGVLDAQGKANGKYY 187
BLAST of mRNA_H-elongata_contig85163.16106.1 vs. uniprot
Match: A0A7S2IGL8_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2IGL8_9STRA) HSP 1 Score: 155 bits (391), Expect = 3.980e-45 Identity = 75/154 (48.70%), Postives = 99/154 (64.29%), Query Frame = 1
Query: 10 GGVKEKFDWLPILPISEAPSPGKAKSVFAADLDLCVAADESGLLYVFGNKCPPTNQPLSFSPVVNNIIKDPVLGTTINIETGDVID-WCPSILGKLLSPILGSKPEDAGVPTFQVRSKSGQLEAYVQVNAKAAYESRYWKGILDAQGKADGEYF 468
G K K ++P + + P PG A S A L +C+A DE G +Y G+KCPP NQPLSF V I+DPVLGT N++TG+V WCP +GKLL + E +GVP F V++ G +E V VNAKA +ES+YW G+LDAQGKA+G+Y+
Sbjct: 34 GPFKSKVQYVPCISTEDLPEPGFATSGVAGGLAICIAVDEKGSVYALGDKCPPVNQPLSFGRVRGGCIEDPVLGTKFNLKTGEVEGKWCPGGIGKLLGGLF----EPSGVPVFPVKTGKGVVEVQVDVNAKANFESQYWSGVLDAQGKANGKYY 183
BLAST of mRNA_H-elongata_contig85163.16106.1 vs. uniprot
Match: A0A6S9DYT7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S9DYT7_9STRA) HSP 1 Score: 154 bits (389), Expect = 8.230e-45 Identity = 72/154 (46.75%), Postives = 102/154 (66.23%), Query Frame = 1
Query: 10 GGVKEKFDWLPILPISEAPSPGKAKSVFAADLDLCVAADESGLLYVFGNKCPPTNQPLSFSPVVNNIIKDPVLGTTINIETGDVID-WCPSILGKLLSPILGSKPEDAGVPTFQVRSKSGQLEAYVQVNAKAAYESRYWKGILDAQGKADGEYF 468
G K K ++P + + P+PG+A S A L +C+A DE+G +Y G+KCPP NQPLSF V I+DPVLGT N++TG+V WCP +GKLL + + +GVP + V++ G ++ V VNAKA +ES+YW G+LDAQGKA+G+Y+
Sbjct: 35 GPFKAKVQYVPCIATEDLPAPGQATSGVAGGLAICIAVDENGSVYALGDKCPPINQPLSFGRVAGGCIEDPVLGTKFNLKTGEVEGKWCPGGVGKLLGGLF----DPSGVPVYPVKTGKGTVDVQVDVNAKANFESQYWSGVLDAQGKANGKYY 184
BLAST of mRNA_H-elongata_contig85163.16106.1 vs. uniprot
Match: A0A7S4J166_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J166_9STRA) HSP 1 Score: 157 bits (397), Expect = 8.640e-45 Identity = 73/157 (46.50%), Postives = 101/157 (64.33%), Query Frame = 1
Query: 1 MAGGGVKEKFDWLPILPISEAPSPGKAKSVFAADLDLCVAADESGLLYVFGNKCPPTNQPLSFSPVVNNIIKDPVLGTTINIETGDVID-WCPSILGKLLSPILGSKPEDAGVPTFQVRSKSGQLEAYVQVNAKAAYESRYWKGILDAQGKADGEYF 468
MA + + ++P +P+ P PG A S A L +C+A D SG ++ G+KCPP NQPLSF V + I+DPVLGT ++++GDV+ WCPS +GKLL + + GVP + V+ +E V VNAKA YES+YW G+LDAQGKADG+Y+
Sbjct: 132 MAKKPLGQSLKYVPCIPVDSLPKPGTATSGVAGGLAICIAVDPSGSIFALGDKCPPVNQPLSFGKVADGTIEDPVLGTKFSLKSGDVVGAWCPSGIGKLLGGLF----DPYGVPVYPVKKSGANIEVQVDVNAKANYESQYWSGVLDAQGKADGKYY 284
BLAST of mRNA_H-elongata_contig85163.16106.1 vs. uniprot
Match: A0A7S2E968_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2E968_TRICV) HSP 1 Score: 152 bits (385), Expect = 3.220e-44 Identity = 71/149 (47.65%), Postives = 98/149 (65.77%), Query Frame = 1
Query: 25 KFDWLPILPISEAPSPGKAKSVFAADLDLCVAADESGLLYVFGNKCPPTNQPLSFSPVVNNIIKDPVLGTTINIETGDVID-WCPSILGKLLSPILGSKPEDAGVPTFQVRSKSGQLEAYVQVNAKAAYESRYWKGILDAQGKADGEYF 468
K ++P + + + P PG A S A L +C+A D SG ++ G+KCPP NQPLSF V I+DPVLGT +++TG+V+ WCPS +GKLL + E +GVP + V+ +E V VNAKA +ES+YW G+LDAQGKADG+Y+
Sbjct: 39 KLQYVPCVAVDKLPKPGLATSGVAGGLAICIAVDPSGSVFALGDKCPPVNQPLSFGRVSEGTIEDPVLGTKFSLKTGEVVGPWCPSGIGKLLGGLF----EPSGVPVYPVKKAGANIEVQVDVNAKANFESQYWSGVLDAQGKADGKYY 183
BLAST of mRNA_H-elongata_contig85163.16106.1 vs. uniprot
Match: K0SEG8_THAOC (Rieske domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SEG8_THAOC) HSP 1 Score: 141 bits (356), Expect = 8.140e-40 Identity = 66/146 (45.21%), Postives = 96/146 (65.75%), Query Frame = 1
Query: 34 WLPILPISEAPSPGKAKSVFAADLDLCVAADESGLLYVFGNKCPPTNQPLSFSPVVNN-IIKDPVLGTTINIETGDVIDWCPSILGKLLSPILGSKPEDAGVPTFQVRSKSGQLEAYVQVNAKAAYESRYWKGILDAQGKADGEYF 468
++P + + P+ G A S A L +C+A D G +Y G+KCPP NQPLSF V ++ I DPVLGT +++TG+V+ WCP+ LGKL+ + + GVPT+ V++K +E V VN K +E+ YW+GILDAQGK+DG+Y+
Sbjct: 43 YVPCISTDDLPAAGSATSGVAGGLAICIAVDPRGAVYALGDKCPPVNQPLSFGKVGDDGTISDPVLGTKFSLKTGEVVSWCPTGLGKLIGGLF----DPVGVPTYPVKAKGKTVEVQVDVNYKYNFETDYWQGILDAQGKSDGKYY 184 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig85163.16106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig85163.16106.1 >prot_H-elongata_contig85163.16106.1 ID=prot_H-elongata_contig85163.16106.1|Name=mRNA_H-elongata_contig85163.16106.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=157bp MAGGGVKEKFDWLPILPISEAPSPGKAKSVFAADLDLCVAADESGLLYVFback to top mRNA from alignment at H-elongata_contig85163:1161..1631+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig85163.16106.1 ID=mRNA_H-elongata_contig85163.16106.1|Name=mRNA_H-elongata_contig85163.16106.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=471bp|location=Sequence derived from alignment at H-elongata_contig85163:1161..1631+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig85163:1161..1631+ >mRNA_H-elongata_contig85163.16106.1 ID=mRNA_H-elongata_contig85163.16106.1|Name=mRNA_H-elongata_contig85163.16106.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=942bp|location=Sequence derived from alignment at H-elongata_contig85163:1161..1631+ (Himanthalia elongata Himel1 dioecious)back to top |