mRNA_H-elongata_contig8475.16072.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig8475.16072.1
Unique NamemRNA_H-elongata_contig8475.16072.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig8475.16072.1 vs. uniprot
Match: D8LLT3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLT3_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 4.090e-20
Identity = 44/76 (57.89%), Postives = 57/76 (75.00%), Query Frame = 1 
Query:  211 ASAGSGSDSSTYGTS-WDSSPFNLESVTDNGLGLTAKACAERYCHAGINGLDLWLSLEEACMVSQHPQPYFVEGMG 435
            A AG G+D + Y TS WDSSPFNL S+TDN LG+ AK+C++++C AG++GLDLW+S EE C V   PQPYF   +G
Sbjct:   50 AQAG-GADLAGYSTSTWDSSPFNLGSITDNNLGVLAKSCSDKFCRAGVDGLDLWVSFEEVCTVM--PQPYFAARLG 122
[Close]
BLAST of mRNA_H-elongata_contig8475.16072.1 vs. uniprot
Match: A0A6H5LC22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC22_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 6.640e-15
Identity = 32/54 (59.26%), Postives = 46/54 (85.19%), Query Frame = 1 
Query:  226 GSDSSTYGTS-WDSSPFNLESVTDNGLGLTAKACAERYCHAGINGLDLWLSLEE 384
            G++ + Y TS WDSSPF+L+S+TDN LGL AK+C++++C AG++GLDLW+S EE
Sbjct:   51 GAELAGYSTSSWDSSPFHLDSITDNNLGLLAKSCSDKFCQAGVDGLDLWVSFEE 104
[Close]
BLAST of mRNA_H-elongata_contig8475.16072.1 vs. uniprot
Match: A0A7S2G1F8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G1F8_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 4.160e-8
Identity = 27/49 (55.10%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:  280 ESVTDNGLGLTAKACAERYCHAGINGLDLWLSLEEACMVSQHPQPYFVE 426
            E + DN LGLTAK CA +YC++  +GL+LWL+LE+ CM+   P PY VE
Sbjct:   22 EPIADNELGLTAKDCASQYCNSK-DGLELWLTLEQMCMMD--PNPYLVE 67
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8475.16072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LLT3_ECTSI4.090e-2057.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LC22_9PHAE6.640e-1559.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2G1F8_9STRA4.160e-855.10Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8475contigH-elongata_contig8475:380..3498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_002760.1
Exons2
Model size458
Cds size456
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931251.1972604-CDS-H-elongata_contig8475:379..7631622931251.1972604-CDS-H-elongata_contig8475:379..763Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8475 380..763 +
1691679760.0948813-CDS-H-elongata_contig8475:379..7631691679760.0948813-CDS-H-elongata_contig8475:379..763Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8475 380..763 +
1622931251.2236817-CDS-H-elongata_contig8475:3425..34971622931251.2236817-CDS-H-elongata_contig8475:3425..3497Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8475 3426..3497 +
1691679760.1044075-CDS-H-elongata_contig8475:3425..34971691679760.1044075-CDS-H-elongata_contig8475:3425..3497Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig8475 3426..3497 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8475.16072.1prot_H-elongata_contig8475.16072.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig8475 380..3497 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig8475.16072.1

>prot_H-elongata_contig8475.16072.1 ID=prot_H-elongata_contig8475.16072.1|Name=mRNA_H-elongata_contig8475.16072.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=152bp
DTKKTVFNKRPCAWETPPGRAGLAVTRSAIPLSVIPTELLMLMRLLLLVA
VTLMPRPHLTTHAMFAKRYLASAGSGSDSSTYGTSWDSSPFNLESVTDNG
LGLTAKACAERYCHAGINGLDLWLSLEEACMVSQHPQPYFVEGMGHTESR
SE
back to top

mRNA from alignment at H-elongata_contig8475:380..3498+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig8475.16072.1 ID=mRNA_H-elongata_contig8475.16072.1|Name=mRNA_H-elongata_contig8475.16072.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3119bp|location=Sequence derived from alignment at H-elongata_contig8475:380..3498+ (Himanthalia elongata Himel1 dioecious)
GACACAAAAAAAACGGTTTTCAACAAGCGGCCTTGTGCTTGGGAGACACC
ACCAGGGCGGGCGGGCTTGGCCGTAACGCGAAGCGCAATCCCACTGTCTG
TTATTCCCACAGAGCTCCTCATGCTCATGCGTCTCCTCCTTCTAGTCGCA
GTGACGCTAATGCCGCGGCCGCATCTGACAACACACGCTATGTTTGCCAA
GCGCTATCTCGCAAGCGCTGGTAGTGGTTCAGATAGTTCGACTTACGGGA
CGTCTTGGGATTCGTCGCCTTTCAACCTTGAGTCCGTGACCGACAATGGC
TTAGGACTAACAGCCAAGGCCTGCGCCGAGAGGTACTGCCATGCCGGGAT
CAACGGGCTGGATCTATGGCTATCTCTCGAGGAGGTAAGATGGAAAATAC
CATTGTGGGTGCCGTACGTGCTCGCTGGTCAACGAAGTTGAGGATAAATT
ATACGTAGACCATTCCCGTTATGACATGGATTTTCGTTTGTTCGCCAAAA
CTCGACCTTAACGGTAAAATCCCGAAAGCACACTGACTTGGCTGGGGTTA
CCCTAGGGCGTGTATTGCCAAGGGAAGAGGTATAACAAGTCCTGGTGTTA
GCGTCGTACTGGCCAGCCCGGCCGGCATCCTGCGACTTGATACGCGGCGA
AATTGGGTACGCGATGCGTACATCAAGCATTGCCTGAAGTTTCCTCCAGG
ATCAAGTTATTTAGTTGGTTGGAACAGACCGCGCACTTGCGACACATGTT
CGTAGCAAGTTTGCCATATTTCCAACTTATGTCTGTGTGTGTTTGTGTGT
GTGTGTTTATATTTGTTAAATTGCACATAACCGCGCAATCCGGCCCTGTC
GTCCTATAGTCCTTCTATACCACTCGTATTGATCCTCCTAGGGGGGGATT
AATGATACTTATTCCGAAAACCTCTAATCAAACGCGACAAAGGGGTGTGT
GTGTGTGTGTGTGTGTGTTCTTGCACTGTTGTAGCTTCACTAACAACCTT
GATACTAGTCAATACCGTAAATTCTGTCGATGCGCTTCAATCCTATGAAC
AGCAACGTTACAACCACAACGACCAAAGCGCGATGAGTGTATCTCGTACA
GAATGCAGCCCTAGCTGGCTTTCCTTTTTGCGAGCATGCCTCGGGTGCTT
TGGTTTCAGCAAAGGGGCCGGAACATCTCCATTTGGTTGGAGCCTCGTGG
CCTCCTTCCGCTGCATCTATCTCTCCCTTACCCCCGAAATGGAGCGTTCC
AGCTACTTTAATATAAAAATGCTACTTTAGTCTAATAGAAGAACCAGCTC
GGGCTAACTTTCCTCTACAACATGTACCTGGTATGTTTTTTTAGGGCGCA
TCCTACACTTATTAATAGTATTGTGAAAAAAAACAAAAAACAACAAATCT
AGCTTGTGTAACCGGGGCAACTTGAATTTGGAGGCTCCAAGGTACGGGTA
GAGTCCATGATTCCCCATGACCACCCATACTACCCACCGTACGTATGCAT
GCGCCCAACTAGAGCACACAATACGTATACGTATTCATGCCGCCTGTAAT
AAATAATCAAATCATCCCGCCCACAAGTAAGAATCAAGAACCAAGGCCAT
TCGTATCCCGGGGACTATTTTTTTTTTGCACACATCATCGAGGTGTCCAG
ACCTCCTGTAGAGTAAAGGACAGTAGTATTTGCATTATCTCTCTTTTATT
ACAGTATTAAAAAATTATGAACTCATTTCAACCCTCCGAACATCCACACC
TTCTTAGGACCATGGGAGGTGTAGTCCAGGGGACCAACTATCGTCAGGTT
CGAACGTGGACATTTTATCTAAATTTCAGCACAAATTCGTCATACATGAT
TTATTCATCATATGGGGATGACAAACCAGAGTAGTATAGGGAGTGAACTG
TGTGTGGTGGTTAGTAAGGGTTAGGCATAGCATGTAGAGAATGATCATGC
ATTTTCTCTTCTTTTTTTTTTTCTTTCTTGTTCTGCATATTTATTCAGTA
TTTTCAAGAAGTGTAATGTACTCCAGAACATCATCACACAAGTACGTCTG
CCTCTATAGTACAGTGCATACGCGAACGCTATTGATAATTAAGCCGCTCC
CGTCTCGGCATGTTCACGTTTCTCGTGTTTTCTACACGTGTAACGCCGCT
TCGATAGCATTGGGTGGCCACAGTAACAGGGGTCTACACAGACCTGCGTA
GGTTCACGTATTGTTACGGCAAGGTGGAGACGCAATGTGCGCGCTAGATA
GCCTGCCTTACACTCGCAAAATGGTTAATAAGGTCACGAACGGAACCACA
TTCACAGTCCATTCCGGATGATCCCTTCTGAACATATCGACAAATATATC
AATCTCTCTCTATGTATATATCTTTCCGTATTATGAACAACGAGTATCAC
ACCATAACATTAACCCTCAGAATAAGTCACCATAGTTATGGGCGGTTTCT
CCGCCCGCTGGAATGCGAATCGTTAGCTCCACAGTATAATTAGTATTATT
AGTCCGAGCGACCAGCCCCGTCCACCCACGTCAAGTGAACAAGGATGCCG
TGGTGTGCGCGATTAGCCCCTGTTTGTGATCACATCATCCATAAATGAGA
ATATCCCCTATATGTCACCGTTAGTTATGGCAGCCCGGCACTCTCGACTC
TAATGTTCCATGTTGCTTCATTAAGATAGTTGATACTATTAATACTATTG
CATCATATGTTGACTTTATTTGGTCGTGCCACATTTTCAGAGGGGTATTC
AGCTCGGACTGTGTACAGTACTCCCATATTTTACTATTTTCAACCACAGA
CGTGCCTTCATTCTTCAACGAACGAACGATTAAGGCACAACGTCCTTGTT
TGCCCTAGGTGTCAGCTAAGGATTTGCTGCTGTCCCGGTCGCAAAGGCGC
GCTCTAGGACGCGAGATTCATTATTATAATCTTCCACCAAACTCACCTTA
TTTTAATATTGTTCTGACCTCGCTCGCTCAAAGACAAACTAAATATGTGC
CCTCGACGGACTCATCCCATGCCCCTTGCCACCCTTTCTCCCTCAGGCAT
GCATGGTATCCCAACATCCACAGCCATATTTCGTCGAAGGGATGGGTCAC
ACGGAAAGCAGGAGCGAGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig8475:380..3498+

>mRNA_H-elongata_contig8475.16072.1 ID=mRNA_H-elongata_contig8475.16072.1|Name=mRNA_H-elongata_contig8475.16072.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=912bp|location=Sequence derived from alignment at H-elongata_contig8475:380..3498+ (Himanthalia elongata Himel1 dioecious)
GACACAAAAAAAACGGTTTTCAACAAGCGGCCTTGTGCTTGGGAGACACC
ACCAGGGCGGGCGGGCTTGGCCGTAACGCGAAGCGCAATCCCACTGTCTG
TTATTCCCACAGAGCTCCTCATGCTCATGCGTCTCCTCCTTCTAGTCGCA
GTGACGCTAATGCCGCGGCCGCATCTGACAACACACGCTATGTTTGCCAA
GCGCTATCTCGCAAGCGCTGGTAGTGGTTCAGATAGTTCGACTTACGGGA
CGTCTTGGGATTCGTCGCCTTTCAACCTTGAGTCCGTGACCGACAATGGC
TTAGGACTAACAGCCAAGGCCTGCGCCGAGAGGTACTGCCATGCCGGGAT
CAACGGGCTGGATCTATGGCTATCTCTCGAGGAGGACACAAAAAAAACGG
TTTTCAACAAGCGGCCTTGTGCTTGGGAGACACCACCAGGGCGGGCGGGC
TTGGCCGTAACGCGAAGCGCAATCCCACTGTCTGTTATTCCCACAGAGCT
CCTCATGCTCATGCGTCTCCTCCTTCTAGTCGCAGTGACGCTAATGCCGC
GGCCGCATCTGACAACACACGCTATGTTTGCCAAGCGCTATCTCGCAAGC
GCTGGTAGTGGTTCAGATAGTTCGACTTACGGGACGTCTTGGGATTCGTC
GCCTTTCAACCTTGAGTCCGTGACCGACAATGGCTTAGGACTAACAGCCA
AGGCCTGCGCCGAGAGGTACTGCCATGCCGGGATCAACGGGCTGGATCTA
TGGCTATCTCTCGAGGAGGCATGCATGGTATCCCAACATCCACAGCCATA
TTTCGTCGAAGGGATGGGTCACACGGAAAGCAGGAGCGAGGCATGCATGG
TATCCCAACATCCACAGCCATATTTCGTCGAAGGGATGGGTCACACGGAA
AGCAGGAGCGAG
back to top