prot_H-elongata_contig8475.16072.1 (polypeptide) Himanthalia elongata Himel1 dioecious

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-elongata_contig8475.16072.1
Unique Nameprot_H-elongata_contig8475.16072.1
Typepolypeptide
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Sequence length152
Homology
[Close]
BLAST of mRNA_H-elongata_contig8475.16072.1 vs. uniprot
Match: D8LLT3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLT3_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 4.090e-20
Identity = 44/76 (57.89%), Postives = 57/76 (75.00%), Query Frame = 0 
Query:   71 ASAGSGSDSSTYGTS-WDSSPFNLESVTDNGLGLTAKACAERYCHAGINGLDLWLSLEEACMVSQHPQPYFVEGMG 145
            A AG G+D + Y TS WDSSPFNL S+TDN LG+ AK+C++++C AG++GLDLW+S EE C V   PQPYF   +G
Sbjct:   50 AQAG-GADLAGYSTSTWDSSPFNLGSITDNNLGVLAKSCSDKFCRAGVDGLDLWVSFEEVCTVM--PQPYFAARLG 122
[Close]
BLAST of mRNA_H-elongata_contig8475.16072.1 vs. uniprot
Match: A0A6H5LC22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC22_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 6.640e-15
Identity = 32/54 (59.26%), Postives = 46/54 (85.19%), Query Frame = 0 
Query:   76 GSDSSTYGTS-WDSSPFNLESVTDNGLGLTAKACAERYCHAGINGLDLWLSLEE 128
            G++ + Y TS WDSSPF+L+S+TDN LGL AK+C++++C AG++GLDLW+S EE
Sbjct:   51 GAELAGYSTSSWDSSPFHLDSITDNNLGLLAKSCSDKFCQAGVDGLDLWVSFEE 104
[Close]
BLAST of mRNA_H-elongata_contig8475.16072.1 vs. uniprot
Match: A0A7S2G1F8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G1F8_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 4.160e-8
Identity = 27/49 (55.10%), Postives = 36/49 (73.47%), Query Frame = 0 
Query:   94 ESVTDNGLGLTAKACAERYCHAGINGLDLWLSLEEACMVSQHPQPYFVE 142
            E + DN LGLTAK CA +YC++  +GL+LWL+LE+ CM+   P PY VE
Sbjct:   22 EPIADNELGLTAKDCASQYCNSK-DGLELWLTLEQMCMMD--PNPYLVE 67
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig8475.16072.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LLT3_ECTSI4.090e-2057.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LC22_9PHAE6.640e-1559.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2G1F8_9STRA4.160e-855.10Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..28
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 55..152
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 29..54

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig8475contigH-elongata_contig8475:380..3497 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig8475.16072.1mRNA_H-elongata_contig8475.16072.1Himanthalia elongata Himel1 dioeciousmRNAH-elongata_contig8475 380..3498 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-elongata_contig8475.16072.1 ID=prot_H-elongata_contig8475.16072.1|Name=mRNA_H-elongata_contig8475.16072.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=152bp
DTKKTVFNKRPCAWETPPGRAGLAVTRSAIPLSVIPTELLMLMRLLLLVA
VTLMPRPHLTTHAMFAKRYLASAGSGSDSSTYGTSWDSSPFNLESVTDNG
LGLTAKACAERYCHAGINGLDLWLSLEEACMVSQHPQPYFVEGMGHTESR
SE
back to top